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Gene: Perm1 (PPARGC1 and ESRR induced regulator, muscle 1) Rattus norvegicus

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Symbol:

Perm1

Name:

PPARGC1 and ESRR induced regulator, muscle 1

RGD ID:

1304931

Description:

Predicted to be involved in regulation of DNA-templated transcription and response to muscle activity. Predicted to be active in cytoplasm and nucleus. Orthologous to human PERM1 (PPARGC1 and ESRR induced regulator, muscle 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

hypothetical protein LOC313776; LOC313776; PGC-1 and ERR-induced regulator in muscle protein 1; RGD1304931; similar to RIKEN cDNA 2310042D19; uncharacterized protein LOC313776

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	172,082,249 - 172,087,542 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	172,082,249 - 172,087,542 (+)	Ensembl				GRCr8
mRatBN7.2	5	166,800,030 - 166,805,323 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	166,800,030 - 166,805,323 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	169,502,101 - 169,507,410 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	171,323,485 - 171,328,794 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	171,286,046 - 171,291,355 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	173,640,780 - 173,646,073 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	173,640,780 - 173,646,073 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	177,114,820 - 177,120,113 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	173,050,659 - 173,055,952 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	165,001,875 - 165,007,168 (+)	NCBI		Celera
RGSC_v3.1	5	173,062,213 - 173,066,446 (+)	NCBI
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

4,4'-sulfonyldiphenol (EXP)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

cadmium dichloride (ISO)

cantharidin (ISO)

CHIR 99021 (ISO)

chlorpyrifos (ISO)

dioxygen (EXP)

doxorubicin (ISO)

endosulfan (EXP)

folic acid (ISO)

gentamycin (EXP)

glycidol (EXP)

hydroquinone O-beta-D-glucopyranoside (ISO)

kojic acid (ISO)

Monobutylphthalate (ISO)

morphine (EXP)

N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal (ISO)

O-methyleugenol (ISO)

okadaic acid (ISO)

ozone (ISO)

perfluorooctanoic acid (EXP)

pioglitazone (ISO)

rotenone (EXP)

silicon dioxide (ISO)

trichloroethene (EXP)

tris(2-butoxyethyl) phosphate (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

XL147 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of DNA-templated transcription (IBA,IEA,ISO)

response to muscle activity (IBA,IEA,ISO)

Cellular Component

cytoplasm (IBA,IEA,ISO)

nucleus (IBA,IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:23836911

Genomics

Comparative Map Data

Perm1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	172,082,249 - 172,087,542 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	172,082,249 - 172,087,542 (+)	Ensembl				GRCr8
mRatBN7.2	5	166,800,030 - 166,805,323 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	166,800,030 - 166,805,323 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	169,502,101 - 169,507,410 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	171,323,485 - 171,328,794 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	171,286,046 - 171,291,355 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	173,640,780 - 173,646,073 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	173,640,780 - 173,646,073 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	177,114,820 - 177,120,113 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	173,050,659 - 173,055,952 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	165,001,875 - 165,007,168 (+)	NCBI		Celera
RGSC_v3.1	5	173,062,213 - 173,066,446 (+)	NCBI
Cytogenetic Map	5	q36	NCBI

PERM1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	975,198 - 982,093 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	975,194 - 982,134 (-)	Ensembl			hg38	GRCh38
GRCh37	1	910,578 - 917,473 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	900,442 - 907,330 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	1	1,672,416 - 1,681,155 (+)	NCBI		Celera
Cytogenetic Map	1	p36.33	NCBI
HuRef	1	180,218 - 188,770 (-)	NCBI		HuRef
CHM1_1	1	897,508 - 904,500 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	403,907 - 411,933 (-)	NCBI		T2T-CHM13v2.0

Perm1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	156,287,724 - 156,305,766 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	156,300,325 - 156,305,764 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	156,203,262 - 156,221,307 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	156,215,868 - 156,221,307 (+)	Ensembl			mm10	GRCm38
MGSCv37	4	155,590,036 - 155,595,416 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	155,590,036 - 155,595,416 (+)	NCBI		MGSCv36	mm8
Celera	4	158,472,399 - 158,477,792 (+)	NCBI		Celera
Cytogenetic Map	4	E2	NCBI
cM Map	4	88.62	NCBI

Perm1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955486	9,732,734 - 9,735,881 (+)	Ensembl
ChiLan1.0	NW_004955486	9,731,317 - 9,736,821 (+)	NCBI	ChiLan1.0	ChiLan1.0

PERM1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	227,282,197 - 227,287,210 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	225,978,868 - 225,983,960 (+)	NCBI		NHGRI_mPanPan1
PanPan1.1	1	874,195 - 881,000 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	875,161 - 880,042 (-)	Ensembl			panPan2	panpan1.1

PERM1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	56,202,318 - 56,207,617 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	56,202,939 - 56,204,453 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	56,280,377 - 56,285,677 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	56,405,851 - 56,411,158 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	56,406,283 - 56,410,980 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	56,396,933 - 56,402,232 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	56,288,850 - 56,294,145 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	56,678,872 - 56,684,172 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Perm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	27,393,164 - 27,397,556 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936737	2,067,432 - 2,072,784 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PERM1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	63,308,187 - 63,341,843 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	63,336,116 - 63,341,747 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	57,942,534 - 57,945,240 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PERM1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	130,445,002 - 130,457,663 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	130,452,807 - 130,458,732 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666054	35,082,206 - 35,086,973 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Perm1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624818	8,526,953 - 8,537,071 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Perm1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	4,448,264 - 4,452,771 (-)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	115
Count of miRNA genes:	96
Interacting mature miRNAs:	104
Transcripts:	ENSRNOT00000027476
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	130249266	172190305	Rat
1354583	Despr3	Despair related QTL3	4.98	0.0002	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	5	132930505	172190305	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	141212838	172190305	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	131708216	172190305	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	99905133	172190305	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	133789363	172190305	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	134369199	172190305	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	136631198	172190305	Rat
1354631	Swd2	Spike wave discharge measurement QTL 2	3.64	0.0002	brain electrophysiology trait (VT:0010557)	brain total spike-and-wave discharge duration (CMO:0001740)	5	156396728	172190305	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	133081618	172190305	Rat
1581505	Rf54	Renal function QTL 54			kidney physiology trait (VT:0002136)	kidney 20-HETE level (CMO:0001854)	5	133270647	172190305	Rat
1641920	Colcs1	Colorectal carcinoma susceptibility QTL 1	2.99	0.0055	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	5	160071170	172129029	Rat
2317753	Glom24	Glomerulus QTL 24	3.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	5	141764300	172190305	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	133081618	172190305	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	133789363	172190305	Rat
1331721	Bp210	Blood pressure QTL 210	3.413		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	148093485	172129029	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	125969677	172190305	Rat

Markers in Region

D5Got252

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	5	172,081,048 - 172,081,252 (+)	Marker Load Pipeline
mRatBN7.2	5	166,798,831 - 166,799,033 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	173,639,582 - 173,639,783	NCBI	Rnor6.0
Rnor_5.0	5	177,113,622 - 177,113,823	UniSTS	Rnor5.0
RGSC_v3.4	5	173,049,461 - 173,049,662	UniSTS	RGSC3.4
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	157	91	90	59	87	59	6	348	187	10	135	78	90	31	15	15

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC097183	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC088460	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000027476 ⟹ ENSRNOP00000027476

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	172,082,249 - 172,087,542 (+)	Ensembl
mRatBN7.2 Ensembl	5	166,800,030 - 166,805,323 (+)	Ensembl
Rnor_6.0 Ensembl	5	173,640,780 - 173,646,073 (+)	Ensembl

RefSeq Acc Id:

NM_001108001 ⟹ NP_001101471

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	172,082,249 - 172,087,542 (+)	NCBI
mRatBN7.2	5	166,800,030 - 166,805,323 (+)	NCBI
Rnor_6.0	5	173,640,780 - 173,646,073 (+)	NCBI
Rnor_5.0	5	177,114,820 - 177,120,113 (+)	NCBI
RGSC_v3.4	5	173,050,659 - 173,055,952 (+)	RGD
Celera	5	165,001,875 - 165,007,168 (+)	RGD

Sequence:

show sequence

ACAAGCCTCCAGATGATAGCTCCATGGCCCTAGCTGGCTGCTGAGAACCAGGACTGTGACAGTA
TGTCACGGTACTGTTATTTGGAGCTGAATTGAAAACAGGGGAAACTGAAGTAGATTTCTAACTC
AGAAGAATGAAGTAGAATCTGGAAAGAAGGAAAGTCTGTCCTGTGGTTCTTCCAGATAGAATGG
ACTGCCAGGGCGGGGACAGGTGCTACAAGGTCAGGCAGGATAGTGGCAATGTGTGCTACTTAGT
GCATGGAGCCTGGATTTGTGAAGACCCTGCCTGGCCCAAAGTCTTGCTGTCACTCCAGCACCTC
TGCTGATGTGCAATGGACAACTTCCAGTACAGTGTCCAGCTCAGCGATCGTGAATGGGCCGAGT
TCTCAGCCACTGCTGATGAGTGTGGCCTCTTGCAGGCTGACCTGGCTTCTGGCGACGAGCCCTT
GTCCAGTGACATTGACCAAGGGGACAGCAGTGGAAGCAGCCCCCCTGGGCCCCCACCCCTCTTC
ACTGGGCAGCTGGTTTCCCAAGGGAGGGGACAACAGGGCTGTGAGTTGGAGGACGTGGCCGCTC
AGCAGTTGGTCAGCAGGTCTCAGTGTGAGCCTGTCCTGGCTCTGGAGGCCAGTCATCAGGTAGT
CAGCACGTCCACACAGTCAGAAGCCCTTCCGTTCCCCAGCTCAGACAGTGTCTGTCCTGGCCAG
GCCTTGTCCTTCCCAGGGTCAGCAACTTTCACAGACAAAATGCAGAGGCTTTTGCAAGGTCCTG
CCCCTAGTTCTCCTGGTAAACCCCCCCATAGTCCCGAGTCTCCTGGCCACAGTGCCATCCCTCA
AAGTCCCCCTGACAGCCTTGAAGCTTCACCGCAGAAACCTGGTCGTAAGAAGAGGCGTGGTGTT
GGTGCCAAGGGGACCAAGTACTCTGGATCTCCAGACTCTGCTGCTATCCAGATGAGCTCCCCAC
AGCTTACGGAGGCCAGGCCCAAGAAGGTTCTTATGTCTGGGACACTAATAGCAAAATCCCAGCA
GGATAAGCCACAGTCGGACTCCACGGGTGCTCCGGAACATGACTCTAGTATTCCTGAACAGATG
GCCAGACAGGAGTCAGGCTCGGATCTTCCTACACCTACTCCGATAACTGAGCAAGATACTGACC
AGATCGGAAAGAAATCCAGAGCCGTGTTACACTTGGTATCCAAACCTGTCCAGGAAGTTCATCC
AGATATCTCCATGGCAACACCAAATATGTCTAAACCTGCCACCAAGCCTCAACCCTACATGGCT
TTGTCTAAACCTGCCTCCAAGCCTCAGCCTGACATAGCTTCGTCTACACACCCCTTCACGCCTG
ACATGGCTTTGTCCACACTTGCCTTCAAATGTCAACCCCATACAAATCAGTCTACACCTGCCTC
TGAGCCTGACATGGCTTTGTCCACAACTGCCTCTATGTCTCAACTGGGCAAGGCTGACTTTGCC
TCTTCGTGCACACCTGGATTGCACGTGGACCTCTCTGCAGCAGGCTCAGAGATCAAGACAGAAG
TTTCTCCCTCTGTGCCTGCTTCAGTGGATGTGCTTTCTACAGATTTGCCTCATTCTGTTTCAAA
GACTGAGTCTACAGAGAGTGTGTCTATACCTGTTATGCCTTCTTTATCCCCTATTTCCCAGGCT
GAAGCTGCTGTGGTGGATACAGCAGTGACTCTGCCTCCAGGGGGAAACATTGAGAAGCCAGTAG
GGCAGTTCTCAGCAGGGTCCTCAGGAGAGCCCTGCCTAGGTCCTGTCCAAGGCCCCAAGAAGAA
GAAAGTACGATTTTCCATGGCTATACCCAGCCATGAAGAATCAAGGTCAGGCGAGCCTACAGGA
TCATCCTCCCTAACCCCGGACTGGCCCTCAGCTCCCAGGACAGCAGCAGGAAGCCGTGGGGGGT
CAGCAGCCTGGGACGCTGTAGCTGTTGGACCCCGACTCCCCCAGCCTCGGATCCTCAAGCACCT
GCCTCCTCCTATATCCTCTGTATCAGCAGAGGCTGAGCCTGGAAGCTGCTTTGCAGTGACTCTC
CCTGAGGCCTATGAGTTCTTTTTCTGTGACACCATTGAGGAAGAAGATGAAGATGTAGAAGACG
AGGAGGCAGCCAGCCAAGCCCTGGATGAAGTCCAATGGCCTGACACATGCGAGTTTTTTTTTCG
GGATAGCAGAGCCCAGAGGTCAAGATGTCAGAGGGGCCACTCCTCAGTGTCGCCACCGAGAGCA
GACACTGTGGCACCTGTTCCCCCTGGAGATTTAGTGCCAATCTCCATCCCTGAGGTCTATGAAC
ACTTCTTCCCTGAGGAAGGATTTGGGAACAGACAGCCACCAGCCACTCATATCCAGATGCAGAC
CTCAGAGCTTTCTAGGGAAGTCGGGCCTGAGGCACCTTCCAACCCTGTTCCACCTACAGCAGAA
CACCTTAGTTTAACAATCAGGAAGGCAGGGGAACTACGGAGTCCCCTTACTTCATTTAAATTTA
GCCAAAATGACATGTGCCTGGTGTTCGTTGCCTTTGCCACGTGGGCTGTGAGAACCTCGGATCT
ACATGCCCCAGATGCTTGGAAAACAGTCTTGCTGGCCAACATTGGCACCATCTCCGCTATCCGC
TACTTCCGTCGCCAGGTTGGGAGAGGGCATGGTGGCAGACCAAGACCCAGTTCCAGCTCAGACC
CCAGCTGCTAGAAGCCAGGCTGGCCTGGTGAGGCATGAGCATGAAGATGAACCCAGGTGACAAG
GACAAGATGTTGCTCTTCTCCCCACCCTTTGACCCCTGTCTTCTAAGGCATCTAGGAAGGAACC
AGTGTCCTTGGTACTGATTTACTTAGATTCAACCTAAGGGTCCAGCCACTGACTAAGGCCAAGG
CCATTTTTCCATACCTGGGAGGGTAGAGATTCAGGGTTGTGGGTAAGTGGGCACTAAACATGGA
TTTGCAAGGAAAAACGACAGGGCATCGAGCTAAATTTGAATTTACATGAAATTCCTGAAATGTA
CTTGTATGAAGAAACTGTTATCTGAAACCTAACTTAAATGGGCATCCTGCCTTTTGTCTGGTGA
GAAATGAAAGTGATCTACAATAAGTGTCAAAGCAACAAGGCCCCTCTGGATATGTCTAGGCCAG
GATGAGGATACTAAGTGCCTTCAAAGCGAGAGGGAGGCAGGCCAAGAACACTGCCCTACTGAAA
GGCAGGCTTGGCCGGCTAGGGCCTCCAAGGCCCTGATCCCTGAGGCACCACAGCCACAACTTGT
GTAGGCCTGGCCCAGGTCAGTGAATAGGTTCTAGGCAGTGGTTCTCAACCTTCCTAATGCTGCA
ACCCTTCAATACAGTTTCTCCTGTTGTAGTAATCCCCAACCATAAAATTATTTTCATTGCGACT
TCATAACTGGACTTTTGCTACTGTTATGAATCATAATGTAAATATTTTTTGGAGCTAGAGGTTT
ACCAAGGGGGTTGTGAGCCATAGGTTGAAAACCATTGTTCTAGGAATAGCTCCAGGGGTGGTTT
CTGAGGCCCCCGCAAGGTGGGATCTATGGGGCAGGGTTGGATCTTCTCCAAGAGCCCCCAACAG
GATATATATATATATATATATATGTATATATATATACTTTGATAGCATCCCATGGAACGACTGT
CTCCTGATACTAAAGGGAGCTTGGAAGAAACCAAGGCTGAGAGAAGTTGTAGAGTGGGAAGGTA
GGCGAAGGGATTGAGGTGACACAGTGATAGCCCCTTCAGGGTGGGGTTCTACCCAAGACAGCAG
ATAAAGGTCCTTAGGATGGTAGATTACTCTGGCTGCTCAGAGGGGAACACAGGGACACAGCACC
AATAAAATCTCTTTCTTGTTT

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Protein Sequences


Protein RefSeqs	NP_001101471	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL81368	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000027476
	ENSRNOP00000027476.5

RefSeq Acc Id:

NP_001101471 ⟸ NM_001108001

- UniProtKB:

D3ZH76 (UniProtKB/TrEMBL), A6IUW7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDNFQYSVQLSDREWAEFSATADECGLLQADLASGDEPLSSDIDQGDSSGSSPPGPPPLFTGQL
VSQGRGQQGCELEDVAAQQLVSRSQCEPVLALEASHQVVSTSTQSEALPFPSSDSVCPGQALSF
PGSATFTDKMQRLLQGPAPSSPGKPPHSPESPGHSAIPQSPPDSLEASPQKPGRKKRRGVGAKG
TKYSGSPDSAAIQMSSPQLTEARPKKVLMSGTLIAKSQQDKPQSDSTGAPEHDSSIPEQMARQE
SGSDLPTPTPITEQDTDQIGKKSRAVLHLVSKPVQEVHPDISMATPNMSKPATKPQPYMALSKP
ASKPQPDIASSTHPFTPDMALSTLAFKCQPHTNQSTPASEPDMALSTTASMSQLGKADFASSCT
PGLHVDLSAAGSEIKTEVSPSVPASVDVLSTDLPHSVSKTESTESVSIPVMPSLSPISQAEAAV
VDTAVTLPPGGNIEKPVGQFSAGSSGEPCLGPVQGPKKKKVRFSMAIPSHEESRSGEPTGSSSL
TPDWPSAPRTAAGSRGGSAAWDAVAVGPRLPQPRILKHLPPPISSVSAEAEPGSCFAVTLPEAY
EFFFCDTIEEEDEDVEDEEAASQALDEVQWPDTCEFFFRDSRAQRSRCQRGHSSVSPPRADTVA
PVPPGDLVPISIPEVYEHFFPEEGFGNRQPPATHIQMQTSELSREVGPEAPSNPVPPTAEHLSL
TIRKAGELRSPLTSFKFSQNDMCLVFVAFATWAVRTSDLHAPDAWKTVLLANIGTISAIRYFRR
QVGRGHGGRPRPSSSSDPSC

hide sequence

Ensembl Acc Id:

ENSRNOP00000027476 ⟸ ENSRNOT00000027476

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZH76-F1-model_v2	AlphaFold	D3ZH76	1-788	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694346

Promoter ID:

EPDNEW_R4870

Type:

multiple initiation site

Name:

Perm1_1

Description:

PPARGC1 and ESRR induced regulator, muscle 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	173,640,782 - 173,640,842	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1304931	AgrOrtholog
BioCyc Gene	G2FUF-38858	BioCyc
Ensembl Genes	ENSRNOG00000020244	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000027476	ENTREZGENE
	ENSRNOT00000027476.7	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7127541	IMAGE-MGC_LOAD
InterPro	Perm1	UniProtKB/TrEMBL
KEGG Report	rno:313776	UniProtKB/TrEMBL
MGC_CLONE	MGC:95112	IMAGE-MGC_LOAD
NCBI Gene	313776	ENTREZGENE
PANTHER	PGC-1 AND ERR-INDUCED REGULATOR IN MUSCLE PROTEIN 1	UniProtKB/TrEMBL
	PTHR47282	UniProtKB/TrEMBL
PhenoGen	Perm1	PhenoGen
RatGTEx	ENSRNOG00000020244	RatGTEx
UniProt	A6IUW7	ENTREZGENE, UniProtKB/TrEMBL
	D3ZH76	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2014-02-04	Perm1	PPARGC1 and ESRR induced regulator, muscle 1	RGD1304931	similar to RIKEN cDNA 2310042D19	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1304931	similar to RIKEN cDNA 2310042D19	RGD1304931_predicted	similar to RIKEN cDNA 2310042D19 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1304931_predicted	similar to RIKEN cDNA 2310042D19 (predicted)	LOC313776_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC313776_predicted	similar to RIKEN cDNA 2310042D19 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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