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Gene: Glt1d1 (glycosyltransferase 1 domain containing 1) Rattus norvegicus

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Symbol:

Glt1d1

Name:

glycosyltransferase 1 domain containing 1

RGD ID:

1304896

Description:

Predicted to enable glycosyltransferase activity. Predicted to be located in cytosol and extracellular region. Orthologous to human GLT1D1 (glycosyltransferase 1 domain containing 1); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 17beta-estradiol 3-benzoate.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

glycosyltransferase 1 domain-containing protein 1; LOC304445; RGD1304896; similar to RIKEN cDNA 5730455A04 gene

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	34,611,942 - 34,685,591 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	34,612,643 - 34,685,468 (-)	Ensembl				GRCr8
mRatBN7.2	12	28,975,984 - 29,049,707 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	28,975,988 - 29,049,695 (-)	Ensembl				mRatBN7.2
Rnor_6.0	12	32,666,664 - 32,749,617 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	32,666,635 - 32,740,732 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	34,574,232 - 34,647,770 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	30,026,320 - 30,098,182 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	30,662,519 - 30,744,974 (-)	NCBI		Celera
RGSC_v3.1	12	29,889,707 - 29,961,640 (-)	NCBI
Cytogenetic Map	12	q14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

17beta-estradiol 3-benzoate (EXP)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4,4'-trichlorobiphenyl (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (EXP)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (ISO)

Dibutyl phosphate (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

fentin chloride (EXP)

fonofos (ISO)

indole-3-methanol (EXP)

lipopolysaccharide (ISO)

methapyrilene (ISO)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

nickel atom (ISO)

okadaic acid (ISO)

ozone (ISO)

paracetamol (ISO)

parathion (ISO)

PCB138 (ISO)

phenobarbital (ISO)

phenylarsine oxide (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

progesterone (ISO)

resveratrol (ISO)

rotenone (EXP)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

terbufos (ISO)

testosterone (EXP)

tetrachloroethene (ISO)

tetrachloromethane (EXP)

Theaflavin 3,3'-digallate (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytosol (IEA,ISO)

extracellular region (IEA)

Molecular Function

glycosyltransferase activity (IEA)

transferase activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Glt1d1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	34,611,942 - 34,685,591 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	34,612,643 - 34,685,468 (-)	Ensembl				GRCr8
mRatBN7.2	12	28,975,984 - 29,049,707 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	28,975,988 - 29,049,695 (-)	Ensembl				mRatBN7.2
Rnor_6.0	12	32,666,664 - 32,749,617 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	32,666,635 - 32,740,732 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	34,574,232 - 34,647,770 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	30,026,320 - 30,098,182 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	30,662,519 - 30,744,974 (-)	NCBI		Celera
RGSC_v3.1	12	29,889,707 - 29,961,640 (-)	NCBI
Cytogenetic Map	12	q14	NCBI

GLT1D1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	128,853,478 - 128,984,968 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	128,853,427 - 128,984,968 (+)	Ensembl			hg38	GRCh38
GRCh37	12	129,338,023 - 129,469,513 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	127,904,034 - 128,035,462 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	12	128,951,908 - 129,083,008 (+)	NCBI		Celera
Cytogenetic Map	12	q24.33	NCBI
HuRef	12	126,322,934 - 126,454,148 (+)	NCBI		HuRef
CHM1_1	12	129,157,936 - 129,290,187 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	128,885,134 - 129,016,644 (+)	NCBI		T2T-CHM13v2.0

Glt1d1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	127,709,134 - 127,786,438 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	127,709,326 - 127,786,438 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	127,632,070 - 127,709,374 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	127,632,262 - 127,709,374 (+)	Ensembl			mm10	GRCm38
MGSCv37	5	128,112,632 - 128,187,890 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	127,921,465 - 127,981,105 (+)	NCBI		MGSCv36	mm8
Celera	5	124,662,449 - 124,746,203 (+)	NCBI		Celera
Cytogenetic Map	5	G1.2- G1.3	NCBI
cM Map	5	66.06	NCBI

Glt1d1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955482	2,209,033 - 2,274,365 (-)	Ensembl
ChiLan1.0	NW_004955482	2,208,059 - 2,283,298 (-)	NCBI	ChiLan1.0	ChiLan1.0

GLT1D1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	136,897,889 - 137,145,065 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	136,894,416 - 137,141,521 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	126,450,553 - 126,625,634 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	130,672,241 - 130,830,487 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	130,672,240 - 130,830,487 (+)	Ensembl			panPan2	panpan1.1

GLT1D1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	2,707,243 - 2,794,708 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	2,707,272 - 2,796,739 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	2,910,215 - 2,997,437 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	2,959,321 - 3,046,992 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	2,959,332 - 3,057,170 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	2,891,460 - 2,978,623 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	2,989,810 - 3,076,768 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	2,899,431 - 2,986,662 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Glt1d1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	124,135,031 - 124,197,210 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936660	523,870 - 584,062 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936660	515,961 - 586,049 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GLT1D1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	25,998,644 - 26,109,033 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	25,998,634 - 26,109,433 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	27,626,139 - 27,684,059 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GLT1D1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	124,204,292 - 124,354,942 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	124,249,340 - 124,353,079 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666037	120,939,801 - 121,090,683 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Glt1d1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	26,288,775 - 26,363,826 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624747	26,288,756 - 26,363,826 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Glt1d1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	16	26,233,951 - 26,306,602 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Glt1d1
501 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	148
Count of miRNA genes:	107
Interacting mature miRNAs:	118
Transcripts:	ENSRNOT00000001275, ENSRNOT00000064526
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631560	Apr1	Acute phase response QTL 1	6.1		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	24805022	52308831	Rat
70213	Niddm27	Non-insulin dependent diabetes mellitus QTL 27	3.72		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	11200494	52308831	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
8693635	Alc28	Alcohol consumption QTL 28	2.7	0.439	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	12	28717718	50386405	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7411643	Foco20	Food consumption QTL 20		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	25989355	52308831	Rat
5684888	Pia42	Pristane induced arthritis QTL 42			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	3489416	48489416	Rat
1331739	Hrtrt14	Heart rate QTL 14	3.56232		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	12	1	38687564	Rat
1641928	Alcrsp5	Alcohol response QTL 5			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	12	18473041	52308831	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200497	52308831	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	15264248	52308831	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	11743528	52308831	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
2293684	Bmd26	Bone mineral density QTL 26	4.4	0.0002	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	12	1	38635130	Rat
70169	Eae13	Experimental allergic encephalomyelitis QTL 13		0.032	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	12	29775522	42298555	Rat
1600386	Calcic2	Intracellular calcium level QTL 2		0.001	platelet physiology trait (VT:0005464)	platelet intracellular calcium level (CMO:0000922)	12	33700432	46784661	Rat
61404	Bw120	Body weight QTL 120	5.1		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	12	17464979	46784661	Rat
1556747	Calcic1	Intracellular calcium level QTL 1		3.6	platelet calcium amount (VT:0010500)	platelet intracellular calcium level (CMO:0000922)	12	33700432	46784661	Rat
1300175	Cm5	Cardiac mass QTL 5	3.78		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	33700432	51558799	Rat
631829	Alc6	Alcohol consumption QTL 6	4.7		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	12	34243475	43352593	Rat
1331786	Kidm11	Kidney mass QTL 11	3.571		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	12	16187438	52308831	Rat
8693658	Alc33	Alcohol consumption QTL 33	2.1	0.68	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	12	28717718	49212240	Rat
2293699	Bss49	Bone structure and strength QTL 49	5.61	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	12	16135029	52308831	Rat
1331761	Bp218	Blood pressure QTL 218	2.973		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	16187438	51213550	Rat
1331763	Wbc2	White blood cell count QTL 2	3.162		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	12	11200494	52308831	Rat
61416	Pia4	Pristane induced arthritis QTL 4	8.4		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	12	18749469	36488809	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	11200494	52308831	Rat
7387292	Kidm42	Kidney mass QTL 42	3.03	0.0004	kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	12	1	41361854	Rat
1300157	Rf21	Renal function QTL 21	4.4		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	12	29636637	37764351	Rat
1298081	Cia25	Collagen induced arthritis QTL 25	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	2747694	47747694	Rat
2303569	Gluco44	Glucose level QTL 44	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	18473041	52308831	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	3087180	48087180	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7243862	Mcs30	Mammary carcinoma susceptibility QTL 30	8.62		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	12	5633306	50633306	Rat
2300186	Bmd59	Bone mineral density QTL 59	7.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	12	16135029	52308831	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat

Markers in Region

BF390887

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	28,987,418 - 28,987,592 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	32,678,376 - 32,678,549	NCBI	Rnor6.0
Rnor_5.0	12	34,585,946 - 34,586,119	UniSTS	Rnor5.0
RGSC_v3.4	12	30,036,051 - 30,036,224	UniSTS	RGSC3.4
Celera	12	30,673,949 - 30,674,122	UniSTS
RH 3.4 Map	12	487.1	UniSTS
Cytogenetic Map	12	q14	UniSTS

AU049244

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	29,043,329 - 29,043,427 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	32,734,491 - 32,734,588	NCBI	Rnor6.0
Rnor_5.0	12	34,641,632 - 34,641,729	UniSTS	Rnor5.0
RGSC_v3.4	12	30,092,168 - 30,092,265	UniSTS	RGSC3.4
Celera	12	30,729,619 - 30,729,748	UniSTS
Cytogenetic Map	12	q14	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	5	16	141	86	86	58	36	58	6	233	75	11	115	80	71	28	14	14

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001431732	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431733	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_001073476	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598512	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604479	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_222147	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000064526 ⟹ ENSRNOP00000063482

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	34,612,643 - 34,685,468 (-)	Ensembl
mRatBN7.2 Ensembl	12	28,975,988 - 29,049,695 (-)	Ensembl
Rnor_6.0 Ensembl	12	32,666,635 - 32,740,732 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108397 ⟹ ENSRNOP00000079936

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	28,975,988 - 29,040,518 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119832 ⟹ ENSRNOP00000097536

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	34,612,643 - 34,685,468 (-)	Ensembl
mRatBN7.2 Ensembl	12	28,975,988 - 29,049,695 (-)	Ensembl

RefSeq Acc Id:

XM_039090103 ⟹ XP_038946031

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	34,611,942 - 34,685,579 (-)	NCBI
mRatBN7.2	12	28,975,984 - 29,049,673 (-)	NCBI

RefSeq Acc Id:

XM_222147 ⟹ XP_222147

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	34,611,942 - 34,685,591 (-)	NCBI
mRatBN7.2	12	28,975,984 - 29,049,680 (-)	NCBI
Rnor_6.0	12	32,666,664 - 32,740,652 (-)	NCBI
Rnor_5.0	12	34,574,232 - 34,647,770 (-)	NCBI
RGSC_v3.4	12	30,026,320 - 30,098,182 (-)	RGD

Sequence:

show sequence

TCTTCTCCTCCCCTCCCCTCTCCTCCGTGCCTTTCCCCTTCCTTCCCTATCTCTCCCCTCTTCC
CCTCCCTACCCCTGAACCTGCGGGCTCCGCCTTGGAGCAGCGGGCGGGACCGAATCCACCTCTA
CCCCGCCGCCCGGGCCTGGTGGCCCAGTCCCTGGCTGTAGCGACATGCGGCTCCTGTTCCTGGC
AGTACTGAGGCCTCACACTGGCAACGCGGTCACGGCTGGGCGCCTGCGGGACCACCTAGAAGCT
GCAGGCCACATGTGCGTTCTGAGAGATGCCTTTGACTTTGAAAGCCCATCTGAAATCGCCAACC
TGATCGTGGGCGAGAATCTGGAAGCAGCACTAGCCCTTCACCTCTACCGAGGAGGCAGACTTCT
CCAAGGTCATGGCATTCCTTTTGGGGTCATCTTTGGTGGAACGGATTTAAATGAAGATGCCAAT
CACAAAGAAAAAAAGGAAGTCATGGGGAAAGTTCTGGAGGAAGCCAGGTTTGCGGTAGCTTTCA
CAGAGGCAATGAAGGACACGGCAGAGGTACAGTGGCCACATGCAACTGGAAAGATCTTTGTCCA
GAGTCAAGGAATTGCAACAATACCAAATGCTGACTTTAACTGGAACACCTTCCTCCAGCAATCA
GAGATCGACCAAAGCGCTGACGACCTGCACATATTCCTTGTCATATGTGGACTCAGACCAGTGA
AGGATCCTTTGTACCTGGTGGATGCCTTCTCAGAATGGCATCAAGAAACACCCAATGTTTACAT
GGTGATTGTAGGTCCTGAGGTAGATCCAGTATTTACAAGGGAAGTGAAAGACCGGGTAAGGAGG
GCGTCAGGGGTGCGACTGATCCGAGAGATGTGCCAGGAAGATCTGCATGCAGTGGTGAAGAGCT
GCTTTGCGCTGGTCAACAGCTCAGTCTCCGAGGGAATGTCAGCCGCCATCTTGGAGGCAATGGA
TTTAGAAGTTCCCGTGCTAGCCAGGAACATCCCTGGGAACTCGGCTGTGGTAGAGCATGGAGTC
ACAGGACTGCTGTTTTCAAACCCTCAGGAGTTTATTCAGTTGGCAAAGAGACTGGTTAGCGATC
CCGCACTGGAGAAGGAAATCGTGACCAACGGAAGGGAATACGTGAGGACACATCACTCCTGGCA
GGTGGAAAGAGACACCTACCAGCGCCTCATTGGGAAGCTGGAGGCGTGCTCGGAGGATTAAGTG
ATGGAAGTCTGTGCTCGCCACATCTGTCCCAGTAACTGTCAAGTGCTCAGCTCTGGGTAGATGC
CACGAAATGGGACCCAGTCCTGGACTACTGGGACCCTAGAGTCTGCAGGAACACATCCACCCCC
AACTCTCCTCCTGTGTGGCAGACAGTTCTGCTGTGCTTACAGCTCAGTTCTGGACGGACTTATA
GCTCACTTCTGAGAGTGCTTGTAGCTCAGTCCCAGAGGTGCTTACAGATCAGTCCTCAGTGGAC
TTGTAGGCTCACTGCTGAAAGTTCTTATGGCTCAGTCCCAGAAGTGTTTGCAGCTCAGTGCAGG
AGATGGAGGTGTATCTCAGGGGCCTTAGGAGGAGTGTTCCAAGAACTGCTTTTACACCTTGTGG
AGGCTTATTTATAAGCAACCACAGAGCAGACCCTTCCCCTGCCTTCACAAAGAAGAAACAAAAA
GGCCAGGATTGTCAATGGAGTGGAACCGGCAGCAGTTTTGATATGATCTTGATCTGCAGGCCAC
CGCGGGATCCTGATGGGCATGAGAGCGGCGGCAGGGGTGAGGGGAGGGGAGGCAAGCTGTGGCT
GGCACGCTAACAAGCTCTGGACAGGCTGTAGCTAGGTTGTATCAGGTTGCCTTGCTTTTCACTG
GTGCACAGGAGAACCTAGCAAGCTTTCCAAAATAGGCCCTGCCCACCAGTATGACATCACAAGG
AGCCTGGACGATGATTGGATGGCCCCCACAATGGAGGCTGGAACCTTGAATTCAGTGTAGGCGT
TCTTCCCTATGACTGCTAGGGAATTGAGGATGAGTTTTGACTTGAAGACTCCAGGCAACGGTGG
TATCCAAGGCTGTGACAAGAGGTCACTGGGGTATGGGAGGTCAGCTTTAGGGGATATCTTTTGA
TGAGATCTCCCTACAACAGCGCTCCGTACCTCCAGTGGCCCCTTCCTTGAATTTCAACAAGGCT
GTGCTACTGTGAGCAGGATGCGGAATAGCCACCTGTGCTAAAGCAAGCAGCTTGGAGGAGGAGG
GAAGAAGAATGCAGCCAAGAGCTACACGTGCATAGAAAGTATCAGGCTCTGGAGGAAACGGAGG
AGGAGTCCGAATCCAGATCATATTTGCTCCAACTCAGAGGCACATCTGGGCCTTTTGCTTTTCT
TAGCAGTAGCAAGCATCTCCTTTTAAGAGAAGCAGGCTGGAAGGAGGCAAACTTTGTAAACCAG
AACTTCAGGGATGAAATCAGAGCTCGATTCTATAGGATGCAATTCTCGGCTTTCTAGTCTGTAC
CTCACATCCAGCACCGTCACTTTCATGAAGGCTCCAGCGGAGGCAGCAGCAATCCGGATGCATT
GCGCAATGAGAAATGTGTCCATTTCCTTAGCCCGAACTGAGCTGGGGTCTTACCTCTCTGGGCA
CAAGAAGGGGAAGTAGGTGGGAGGGGAGGTTGAGTAAGGAGGCCTGAATCTCCAGAGCAGCTCT
TCTGAGCCCAGAGTTCAAACCCACCTCCGGAGAGGTGTGTAGAGGATTCAAAGGTCAGGTGTCA
CGTTTGTTTACAAGAGCGGGATGCTCTGAAATGCTTGCCCCTCCTTTGCCTGGGGATGACATCA
CTGCCTAACTACTCTGCCAGCATCACTAAGCTACATCTGCAAATGCACTTTGGGGAAGCAGGGG
TTCTTAACTAATAAAGCACGTTACCATCTGCCA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001418661	(Get FASTA)	NCBI Sequence Viewer
	NP_001418662	(Get FASTA)	NCBI Sequence Viewer
	XP_038946031	(Get FASTA)	NCBI Sequence Viewer
	XP_222147	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM13531	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000063482
	ENSRNOP00000063482.1
	ENSRNOP00000097536.1

RefSeq Acc Id:

XP_222147 ⟸ XM_222147

- Peptide Label:

isoform X1

- Sequence:

show sequence

MRLLFLAVLRPHTGNAVTAGRLRDHLEAAGHMCVLRDAFDFESPSEIANLIVGENLEAALALHL
YRGGRLLQGHGIPFGVIFGGTDLNEDANHKEKKEVMGKVLEEARFAVAFTEAMKDTAEVQWPHA
TGKIFVQSQGIATIPNADFNWNTFLQQSEIDQSADDLHIFLVICGLRPVKDPLYLVDAFSEWHQ
ETPNVYMVIVGPEVDPVFTREVKDRVRRASGVRLIREMCQEDLHAVVKSCFALVNSSVSEGMSA
AILEAMDLEVPVLARNIPGNSAVVEHGVTGLLFSNPQEFIQLAKRLVSDPALEKEIVTNGREYV
RTHHSWQVERDTYQRLIGKLEACSED

hide sequence

Ensembl Acc Id:

ENSRNOP00000063482 ⟸ ENSRNOT00000064526

RefSeq Acc Id:	XP_038946031 ⟸ XM_039090103
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000079936 ⟸ ENSRNOT00000108397

Ensembl Acc Id:

ENSRNOP00000097536 ⟸ ENSRNOT00000119832

Protein Domains

Glycosyl transferase family

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZUX2-F1-model_v2	AlphaFold	D3ZUX2	1-346	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698610

Promoter ID:

EPDNEW_R9121

Type:

initiation region

Name:

Glt1d1_1

Description:

glycosyltransferase 1 domain containing 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	32,740,723 - 32,740,783	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1304896	AgrOrtholog
BioCyc Gene	G2FUF-19447	BioCyc
Ensembl Genes	ENSRNOG00000000961	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000064526	ENTREZGENE
	ENSRNOT00000064526.6	UniProtKB/TrEMBL
	ENSRNOT00000119832.2	UniProtKB/TrEMBL
Gene3D-CATH	Glycogen Phosphorylase B	UniProtKB/TrEMBL
InterPro	Glyco_trans_1	UniProtKB/TrEMBL
	Glycosyltransferase_G1	UniProtKB/TrEMBL
NCBI Gene	304445	ENTREZGENE
PANTHER	GLYCOSYLTRANSFERASE 1 DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
	PTHR46660	UniProtKB/TrEMBL
Pfam	Glycos_transf_1	UniProtKB/TrEMBL
PhenoGen	Glt1d1	PhenoGen
RatGTEx	ENSRNOG00000000961	RatGTEx
Superfamily-SCOP	UDP-Glycosyltransferase/glycogen phosphorylase	UniProtKB/TrEMBL
UniProt	A0A8I6GMK0	ENTREZGENE, UniProtKB/TrEMBL
	D3ZUX2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Glt1d1	glycosyltransferase 1 domain containing 1	Glt1d1_predicted	glycosyltransferase 1 domain containing 1 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Glt1d1_predicted	glycosyltransferase 1 domain containing 1 (predicted)	RGD1304896_predicted	similar to RIKEN cDNA 5730455A04 gene (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1304896_predicted	similar to RIKEN cDNA 5730455A04 gene (predicted)	LOC304445_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC304445_predicted	similar to RIKEN cDNA 5730455A04 gene (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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