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Gene: Trmt9b (tRNA methyltransferase 9B (putative)) Rattus norvegicus

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Symbol:

Trmt9b

Name:

tRNA methyltransferase 9B (putative)

RGD ID:

1304810

Description:

Predicted to enable tRNA (5-carboxymethyluridine(34)-5-O)-methyltransferase activity and tRNA binding activity. Predicted to be involved in tRNA methylation and tRNA wobble uridine modification. Predicted to be active in cytoplasm and nucleus. Orthologous to human TRMT9B (tRNA methyltransferase 9B (putative)); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC306504; LOC108348403; LOC306504; probable tRNA methyltransferase 9B; putative methyltransferase KIAA1456 homolog; RGD1304810; similar to 6430573F11Rik protein; uncharacterized LOC108348403; uncharacterized protein LOC306504

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TRMT9B (tRNA methyltransferase 9B (putative))	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Trmt9b (tRNA methyltransferase 9B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Trmt9b (tRNA methyltransferase 9B (putative))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TRMT9B (tRNA methyltransferase 9B (putative))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TRMT9B (tRNA methyltransferase 9B (putative))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Trmt9b (tRNA methyltransferase 9B (putative))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TRMT9B (tRNA methyltransferase 9B (putative))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TRMT9B (tRNA methyltransferase 9B (putative))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Trmt9b (tRNA methyltransferase 9B (putative))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Trmt9b (tRNA methyltransferase 9B (putative))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TLR10 (toll like receptor 10)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Trmt9b (tRNA methyltransferase 9B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	TRMT9B (tRNA methyltransferase 9B (putative))	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	TRM9	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	TRM9	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	C35D10.12	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	C35D10.12	Alliance	DIOPT (InParanoid\|OrthoInspector)
Drosophila melanogaster (fruit fly):	fid	Alliance	DIOPT (Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	fid	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	trmt9b	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	trmt9b	Alliance	DIOPT (InParanoid\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	kiaa1456l	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	62,439,625 - 62,495,526 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	16	62,446,393 - 62,495,518 (-)	Ensembl				GRCr8
mRatBN7.2	16	55,740,551 - 55,792,198 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	55,743,018 - 55,792,144 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	16	61,049,833 - 61,098,796 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	64,463,847 - 64,512,774 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	59,683,793 - 59,732,757 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	59,316,145 - 59,368,559 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	59,317,699 - 59,366,824 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	16	58,996,816 - 59,049,222 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	16	59,430,147 - 59,479,272 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	16	53,800,952 - 53,850,064 (-)	NCBI		Celera
RGSC_v3.1	16	59,421,489 - 59,440,004 (-)	NCBI
Cytogenetic Map	16	q12.2	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

4-nonylphenol (ISO)

4-tert-Octylphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

Bufotalin (ISO)

cadmium dichloride (EXP)

carbamazepine (ISO)

cypermethrin (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

fenvalerate (EXP)

okadaic acid (ISO)

p-tert-Amylphenol (ISO)

paracetamol (EXP,ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sotorasib (ISO)

thiram (ISO)

trametinib (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triclosan (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

methylation (IEA)

tRNA methylation (IBA)

tRNA modification (IEA)

tRNA processing (IEA)

tRNA wobble uridine modification (IBA)

Cellular Component

cytoplasm (IBA)

nucleus (IBA)

Molecular Function

methyltransferase activity (IEA)

S-adenosylmethionine-dependent methyltransferase activity (IEA)

transferase activity (IEA)

tRNA (5-carboxymethyluridine(34)-5-O)-methyltransferase activity (IBA)

tRNA binding (IBA)

tRNA methyltransferase activity (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:23381944

Genomics

Comparative Map Data

Trmt9b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	62,439,625 - 62,495,526 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	16	62,446,393 - 62,495,518 (-)	Ensembl				GRCr8
mRatBN7.2	16	55,740,551 - 55,792,198 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	55,743,018 - 55,792,144 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	16	61,049,833 - 61,098,796 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	64,463,847 - 64,512,774 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	59,683,793 - 59,732,757 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	59,316,145 - 59,368,559 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	59,317,699 - 59,366,824 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	16	58,996,816 - 59,049,222 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	16	59,430,147 - 59,479,272 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	16	53,800,952 - 53,850,064 (-)	NCBI		Celera
RGSC_v3.1	16	59,421,489 - 59,440,004 (-)	NCBI
Cytogenetic Map	16	q12.2	NCBI

TRMT9B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	12,945,673 - 13,029,777 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	12,945,642 - 13,031,503 (+)	Ensembl			hg38	GRCh38
GRCh37	8	12,803,182 - 12,887,286 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	12,847,554 - 12,931,657 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	8	11,768,471 - 11,852,572 (+)	NCBI		Celera
Cytogenetic Map	8	p22	NCBI
HuRef	8	11,345,508 - 11,429,548 (+)	NCBI		HuRef
CHM1_1	8	13,004,705 - 13,088,820 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	8	13,211,952 - 13,296,089 (+)	NCBI		T2T-CHM13v2.0

Trmt9b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	36,924,643 - 36,981,738 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	36,924,702 - 36,983,724 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	36,457,485 - 36,514,584 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	36,457,548 - 36,516,570 (+)	Ensembl			mm10	GRCm38
MGSCv37	8	37,552,245 - 37,576,067 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	37,957,708 - 37,981,530 (+)	NCBI		MGSCv36	mm8
Celera	8	39,117,989 - 39,142,108 (+)	NCBI		Celera
Cytogenetic Map	8	A4	NCBI
cM Map	8	23.05	NCBI

Trmt9b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955463	4,032,430 - 4,096,021 (-)	Ensembl
ChiLan1.0	NW_004955463	4,035,145 - 4,096,996 (-)	NCBI	ChiLan1.0	ChiLan1.0

TRMT9B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	31,391,429 - 31,469,133 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	7,097,931 - 7,175,616 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	12,150,772 - 12,228,454 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	8,903,035 - 8,982,277 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	8,904,500 - 8,983,939 (+)	Ensembl			panPan2	panpan1.1

TRMT9B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	36,411,773 - 36,477,602 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	36,448,246 - 36,475,783 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	36,877,293 - 36,947,184 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	38,452,095 - 38,522,656 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	38,499,504 - 38,521,098 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	16	36,550,059 - 36,620,441 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	16	37,112,875 - 37,182,985 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	37,232,608 - 37,296,107 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Trmt9b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	42,713,126 - 42,773,563 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936573	2,398,064 - 2,423,380 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936573	2,368,783 - 2,424,487 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TRMT9B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	1,061,257 - 1,118,483 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	17	1,060,452 - 1,120,237 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	888,845 - 948,335 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TRMT9B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	11,082,525 - 11,113,176 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	11,098,932 - 11,113,057 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666052	31,261,673 - 31,336,929 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Trmt9b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624839	3,965,378 - 4,027,548 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624839	3,960,043 - 4,027,328 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Trmt9b
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	13	50,587,750 - 50,636,992 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Trmt9b
629 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	39
Count of miRNA genes:	36
Interacting mature miRNAs:	38
Transcripts:	ENSRNOT00000015062
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2300163	Bmd64	Bone mineral density QTL 64	5.3	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	16	44455123	89455123	Rat
70215	Niddm29	Non-insulin dependent diabetes mellitus QTL 29	3.54		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	16	36928782	81928782	Rat
1578768	Stresp22	Stress response QTL 22	2.8		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	16	41992064	86992064	Rat
737826	Alc11	Alcohol consumption QTL 11	3.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	4234212	66955197	Rat
2302057	Pia29	Pristane induced arthritis QTL 29	3.6	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)	16	28468701	73468701	Rat
7205510	Activ5	Activity QTL 5	3.78	0.00028	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	49099196	91442908	Rat
631525	Pia14	Pristane induced arthritis QTL 14	4.4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	16	62414464	75736480	Rat
1357403	Slep4	Serum leptin concentration QTL 4	3.91		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	32361043	77361043	Rat
8694453	Bw172	Body weight QTL 172	8.33	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	16	31058039	76058039	Rat
7411648	Foco22	Food consumption QTL 22	15	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	16	59428714	91442908	Rat
1298529	Arunc1	Aerobic running capacity QTL 1	4		exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	16	34398294	79398294	Rat
2312663	Slep9	Serum leptin concentration QTL 9		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	839086	66195506	Rat
2312660	Bw95	Body weight QTL 95		0.05	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	16	839086	66195506	Rat
6903294	Stl30	Serum triglyceride level QTL 30	2.6	0.0013	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	16	31885271	76885271	Rat
2293690	Bss45	Bone structure and strength QTL 45	5.13	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	16	44455123	89455123	Rat
8694364	Abfw7	Abdominal fat weight QTL 7	12.22	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	16	59428714	91442908	Rat
2312666	Insul16	Insulin level QTL 16		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	16	839086	66195506	Rat
8694429	Bw164	Body weight QTL 164	5	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	16	59428714	91442908	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor diameter (CMO:0001889)	16	17730818	72536785	Rat
2312669	Stl23	Serum triglyceride level QTL 23		0.01	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	16	839086	66195506	Rat

Markers in Region

D16Nkg58

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	55,746,279 - 55,746,439 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	59,320,961 - 59,321,120	NCBI	Rnor6.0
Rnor_5.0	16	59,001,632 - 59,001,791	UniSTS	Rnor5.0
RGSC_v3.4	16	59,433,409 - 59,433,568	UniSTS	RGSC3.4
Celera	16	53,804,214 - 53,804,373	UniSTS
Cytogenetic Map	16	q12.2	UniSTS

RH130768

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	55,743,193 - 55,743,392 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	59,317,875 - 59,318,073	NCBI	Rnor6.0
Rnor_5.0	16	58,998,546 - 58,998,744	UniSTS	Rnor5.0
RGSC_v3.4	16	59,430,323 - 59,430,521	UniSTS	RGSC3.4
Celera	16	53,801,128 - 53,801,326	UniSTS
RH 3.4 Map	16	557.9	UniSTS
Cytogenetic Map	16	q12.2	UniSTS

RH144197

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	55,753,564 - 55,753,664 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	59,328,246 - 59,328,345	NCBI	Rnor6.0
Rnor_5.0	16	59,008,917 - 59,009,016	UniSTS	Rnor5.0
RGSC_v3.4	16	59,440,694 - 59,440,793	UniSTS	RGSC3.4
Celera	16	53,811,499 - 53,811,598	UniSTS
RH 3.4 Map	16	557.1	UniSTS
Cytogenetic Map	16	q12.2	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	155	91	90	59	73	59	6	329	173	11	131	73	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107314	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436850	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436851	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_199181	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_199182	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_199183	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_199184	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253222	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253223	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771300	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771301	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600130	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094541	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275435	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275436	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473970	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000015062 ⟹ ENSRNOP00000015062

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	62,446,393 - 62,495,518 (-)	Ensembl
mRatBN7.2 Ensembl	16	55,743,018 - 55,792,144 (-)	Ensembl
Rnor_6.0 Ensembl	16	59,317,699 - 59,366,824 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000154588 ⟹ ENSRNOP00000110498

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	62,446,393 - 62,454,422 (-)	Ensembl

RefSeq Acc Id:

NM_001107314 ⟹ NP_001100784

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	62,446,393 - 62,495,518 (-)	NCBI
mRatBN7.2	16	55,743,018 - 55,792,144 (-)	NCBI
Rnor_6.0	16	59,317,699 - 59,366,824 (-)	NCBI
Rnor_5.0	16	58,996,816 - 59,049,222 (-)	NCBI
RGSC_v3.4	16	59,430,147 - 59,479,272 (-)	RGD
Celera	16	53,800,952 - 53,850,064 (-)	RGD

Sequence:

show sequence

CAGATACCCGGTAGAGATTTTTCCTTTACAGTGTGTGTTGTGGTCAGGATCAAAAGGGAAGAGT
TAGGCTTAGGGTCACGTGGGTGTCACCACAGGTACTGAGCTGCGCTTGGGGCCCCGCCAGGTGT
ACCCGCCCAGAGGCGTCTCCCGCTTAGGACCCTTCACCCCACCGGACACTGGAGTAGAGCGAGG
TGAGAGACAGGAAGGTCATCCTGATTCCAGCCTCAGGCACGTCCGGGCGCGGCGATCGCAGGGG
ACAGACAGAGCGGCCACACCGCTTGGGCTCTGCCGCGCGCCCGCGCCGCACCGAGCCGACTCCG
AGGCGCCCCGGGCTTGCGGCCGACCCATGGAAGTTGCATCCTGGACAGTCCGGGCTGCGACGCT
GAAGAGCACCGAGCCAGTGCTCGGCCGAGCCTCCCGCCCGGATCCCGGGCAAAGACCGCCCAAA
ACCTGCTGTTGACCTTCGTCTGCACTGCTCAATGGTGACCCGAGTCTTCGCTGTCCTAGTTGCA
GCCATTTGGCATCCCCAAGACTGCCAGAGCACCCGGGATCTGCAAACCTGGGGCTTGGATTCTC
TTCAGAGACTCATACTGAGTGGTGGATCTTGTGAAGGGCTCACTAACTCAATTCCTGCTCCTTT
CATGTGTGTTATATACTGAGAGCCCTGAGAAGGAACTGTTCCTCCCTGAGGAAGGAAACTGCCG
TGATTTACCAAAACCAGAAATAATCCACATGATCACAAAATGAGTCAGGATGGATCCCGAAGCC
GTGCAGCTGGAGAAGCAGCACGTGCACAAGGTCTATGAGAGCACCGCCCCCTACTTCAGTGACC
TTCAAAACAAAGCTTGGCCCCGCGTCCGCCAGTTCCTGCAGGACCAGAAGCCAGGCAGCCTCAT
CGCTGACATTGGTTGTGGAACTGGAAAGTATCTTAAAGTGAATAGCCAAGTACATACTCTGGGC
TGTGACTACTGTGGCCCTCTGGTAGAGATTGCCCGGAATAGAGGGTGTGAAGTCATGGTATGTG
ACAACCTTAATCTCCCCTTTAGGGACCAGGGCTTCGATGCTATCATCTCCATAGGAGTCATACA
TCATTTCTCTACAAAACAGAGAAGAATCAGAGCAATAAAGGAAATGGCCAGGGTCTTAGCTCCC
GGAGGCCAGCTGATGATTTACGTCTGGGCAATGGAACAGAAGAACCGACACTTTGAGAAACAGG
ATGTGCTTGTGCCATGGAACAGGGCACTCTGTTCCCGGCTGCTGTCAGAATCCCACCAGTCGTG
GGGGCATTCGTGTGAGCATCCCACGAGCCAAGGCTACCAGGGCCCTGGCTCCGCGTGCAGCTGT
GCAGTGTGTTTTAAGGGCAGATGTGATTCCAAGCGGTCGCACAGCATGGACTACGGGCCTGCGG
TGGCCAGAACCTGCTGCGAAGCTATTTCGAAGGAAGGACAGCAAGAGAATGGATTATATAGCAA
TTTTGGAAAATCCTTTCGCTCCTGGTTTTTTTCCAGGTCTTTGGATGAATCAACCCTGAGGAAG
CAAATTGAAAGGGTCAGGCCGATGAAAATCGAGGGCTGGGCCAACAGCACCGTGTCCCACCAGC
CTTCCCGATACCCCAGCGTAGACTTGCATGCCCAGGAGCCGTTTTCAACAAAAAGACCGAACTT
AGATGAGGTGTTCGTAGACGCATCTTCTCAAAGACACGTGGGCTGCCTGGGAGTACCCAGCACT
TCAGACAACTTCATTGGACACAAGGGAGGAGAGAGTAGGAGGAAGGAGGGGGGCAATTTTCTGG
ACACCACTGATACCGGGAACAGTGTGGCTGCAAGAAATGGCGGTGATCGTTCTGCCAGAAAAAT
ATTAAGGAGGGTTTCTGCATTCGACTCCACGGACTCCACCTCAGAAGACCCAAGCTTTGTGGAA
GGGCAACAGGATGGCCCAGATTCCAAAGCCTTCATGCGTTACTACCACGTGTTCCGGGAAGGTG
AGCTGTCCAGCCTGCTGCAGGAGTGTGTGTCTGAGCTGCAGGTTCTGAGCTCCGGCAATGACCA
TGGTAACTGGTGCATCATCGCAGAGAAAAAGAGGAGCTGGGATTAACTACATCGCTCAAGGCAG
AGGCTACAGCCCATCATCTGCTCAATGGGGCTGATGTGGACACCAGAATCGGCACCCTAGTTCA
TTGCTTTCAAATCCAGGTATGAGTCGGACCGTGAGCACTGTGCCCTCATCCTCCGAACTGTTGA
GTAAGCATGAAGGCTGGCATGTCCTGCCTCTGCTGCGGGATCTGCCTGCTGAAGTTTCAATCAA
AGGATCCGAGGAAGCAGTAGAAAGTAAACTTAAGTACAGACTTGATCTTATTCCTCCCAGAGAT
GAAATTATTACGATACGTGTACGTCAAGTGTCAGTATTATCTTTTGGTTTTTAAATAATCCCCT
GTTAAATATACCTTTTAAAAGTAGTAATTTTTAAAAATAAATTATGTTGGTTCTCAGGT

hide sequence

RefSeq Acc Id:

XM_006253222 ⟹ XP_006253284

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	62,439,625 - 62,495,518 (-)	NCBI
mRatBN7.2	16	55,740,551 - 55,791,958 (-)	NCBI
Rnor_6.0	16	59,316,145 - 59,366,638 (-)	NCBI
Rnor_5.0	16	58,996,816 - 59,049,222 (-)	NCBI

Sequence:

show sequence

GCGAGGTGAGAGACAGGAAGGTCATCCTGATTCCAGCCTCAGGCACGTCCGGGCGCGGCGATCG
CAGGGGACAGACAGAGCGGCCACACCGCTTGGGCTCTGCCGCGCGCCCGCGCCGCACCGAGCCG
ACTCCGAGGCGCCCCGGGCTTGCGGTCAGAGCCTGGGGAGAGGCCGACCCATGGAAGTTGCATC
CTGGACAGTCCGGGCTGCGACGCTGAAGAGCACCGAGCCAGTGCTCGGCCGAGCCTCCCGCCCG
GATCCCGGGCAAAGACCGCCCAAAACCTGCTGTTGACCTTCGTCTGCACTGCTCAATGGTGACC
CGAGTCTTCGCTGTCCTAGTTGCAGCCATTTGGCATCCCCAAGACTGCCAGAGCACCCGGGATC
TGCAAACCTGGGGCTTGGATTCTCTTCAGAGACTCATACTGAGTGGTGGATCTTGTGAAGGGCT
CACTAACTCAATTCCTGCTCCTTTCATGTGTGTTATATACTGAGAGCCCTGAGAAGGAACTGTT
CCTCCCTGAGGAAGGAAACTGCCGTGATTTACCAAAACCAGAAATAATCCACATGATCACAAAA
TGAGTCAGGATGGATCCCGAAGCCGTGCAGCTGGAGAAGCAGCACGTGCACAAGGTCTATGAGA
GCACCGCCCCCTACTTCAGTGACCTTCAAAACAAAGCTTGGCCCCGCGTCCGCCAGTTCCTGCA
GGACCAGAAGCCAGGCAGCCTCATCGCTGACATTGGTTGTGGAACTGGAAAGTATCTTAAAGTG
AATAGCCAAGTACATACTCTGGGCTGTGACTACTGTGGCCCTCTGGTAGAGATTGCCCGGAATA
GAGGGTGTGAAGTCATGGTATGTGACAACCTTAATCTCCCCTTTAGGGACCAGGGCTTCGATGC
TATCATCTCCATAGGAGTCATACATCATTTCTCTACAAAACAGAGAAGAATCAGAGCAATAAAG
GAAATGGCCAGGGTCTTAGCTCCCGGAGGCCAGCTGATGATTTACGTCTGGGCAATGGAACAGA
AGAACCGACACTTTGAGAAACAGGATGTGCTTGTGCCATGGAACAGGGCACTCTGTTCCCGGCT
GCTGTCAGAATCCCACCAGTCGTGGGGGCATTCGTGTGAGCATCCCACGAGCCAAGGCTACCAG
GGCCCTGGCTCCGCGTGCAGCTGTGCAGTGTGTTTTAAGGGCAGATGTGATTCCAAGCGGTCGC
ACAGCATGGACTACGGGCCTGCGGTGGCCAGAACCTGCTGCGAAGCTATTTCGAAGGAAGGACA
GCAAGAGAATGGATTATATAGCAATTTTGGAAAATCCTTTCGCTCCTGGTTTTTTTCCAGGTCT
TTGGATGAATCAACCCTGAGGAAGCAAATTGAAAGGGTCAGGCCGATGAAAATCGAGGGCTGGG
CCAACAGCACCGTGTCCCACCAGCCTTCCCGATACCCCAGCGTAGACTTGCATGCCCAGGAGCC
GTTTTCAACAAAAAGACCGAACTTAGATGAGGTGTTCGTAGACGCATCTTCTCAAAGACACGTG
GGCTGCCTGGGAGTACCCAGCACTTCAGACAACTTCATTGGACACAAGGGAGGAGAGAGTAGGA
GGAAGGAGGGGGGCAATTTTCTGGACACCACTGATACCGGGAACAGTGTGGCTGCAAGAAATGG
CGGTGATCGTTCTGCCAGAAAAATATTAAGGAGGGTTTCTGCATTCGACTCCACGGACTCCACC
TCAGAAGACCCAAGCTTTGTGGAAGGGCAACAGGATGGCCCAGATTCCAAAGCCTTCATGCGTT
ACTACCACGTGTTCCGGGAAGGTGAGCTGTCCAGCCTGCTGCAGGAGTGTGTGTCTGAGCTGCA
GGTTCTGAGCTCCGGCAATGACCATGGTAACTGGTGCATCATCGCAGAGAAAAAGAGGAGCTGG
GATTAACTACATCGCTCAAGGCAGAGGCTACAGCCCATCATCTGCTCAATGGGGCTGATGTGGA
CACCAGAATCGGCACCCTAGTTCATTGCTTTCAAATCCAGGTATGAGTCGGACCGTGAGCACTG
TGCCCTCATCCTCCGAACTGTTGAGTAAGCATGAAGGCTGGCATGTCCTGCCTCTGCTGCGGGA
TCTGCCTGCTGAAGTTTCAATCAAAGGATCCGAGGAAGCAGTAGAAAGTAAACTTAAGTACAGA
CTTGATCTTATTCCTCCCAGAGATGAAATTATTACGATACGTGTACGTCAAGTGTCAGTATTAT
CTTTTGGTTTTTAAATAATCCCCTGTTAAATATACCTTTTAAAAGTAGTAATTTTTAAAAATAA
ATTATGTTGGTTCTCAGGTAGTTACTTAGATCCCTGTGGAAGGTAACAGAGACACCTGTGCTGT
TGCTGGGCATGTGTTTAAGGTTCGCTGTGGTGGTATCTCGTTTCCGGACTTCGTTGCTAACTAC
ATCAACCCTTCCAGTATAGCCCAGACCCTCTAAATTACATGCAAACGCCCTTAGGGATGATCGA
TGTTACTAATACTGTCTTCAGCATTGCTCTGAGGCTTTTACAAGGCGCTATTAGCAGAGGGTTG
GTGTTAAAGCAGACAGTTTGCATGCGGCGGAATCAGCAAACATCCATGGCACCATTGACAGAAG
AAAAAGTAAACAAAGGATTGTTAGCGTGCAGAGTGCTTTACAGGGGTAGCAGATGGTATGTCCC
CTGGTCACATTTTCCCCAAAGGCATTAGGAGCATAAATATCTAACTGAGGTTGTCCCAAAGTTA
TCCAGAGTTTTCAACTAGGAAGTGCATATCTGAGTTAGCTAAGAGTCTAATTGGAGCCGTTTTA
CTTTGGCTGTGAGGACAGATCTGGAAATCGTCATGTATTTAGTGGACACATTACTGGGATTCGC
TGCTGCATGCCATGGCATTTATTCCCTTGAAGGTGACCACATTAGATCATTGTATCAGTGACCT
GGACGGAATCAAAGCTTGGTCACAAGTTGAATTTCTGGTATTCTAGAGTGCAATGATTAGACTG
GGTATGGTACAAATCAATACTCTTTTATTTTTAAAGACTTAATCATGAGTCTGATTAATTCTAT
GTTGTGGATCCCAATAACAATTATGACAGAATTCAAGACTGAACTCAGGAGAAACAAAAATAAG
TTGGCCAAGGAATATGGTTCCAGATAATTCGTTAACAAGCAGGAAATCAAATAGTCATTGTACT
TTCTGGACCGATATAATGATGGAGATTGGATTAAAATCCAATCTTCACTTTCTTTTTTTCTCCC
ACTACAAAGTTAACAAAAATTGCAATGGATCATATTTATTTGGTGTTTACCCTCTTCAGAGATT
TTGCTGGACTGTATGAAAATGAAGCTACTTTTGAAAAACACAACTCAAAAGGTGCTTTGAAAAT
GCAAAGTATATCTTGTAAACTTTAGAATGAATCAGATAATTCCTGAGGTTCTTTCAAGTCCAAG
TTCCGTCTCTTCAACCCTGCTGTGGAAGTGGCATGTGTGTCTTGTACTTTCCAGCGTACACTTT
GTACAGGGAGGCATGAAAATAGGCATAGGGGTAAAGCATAGATTAAAATTTACTGTGCCTTCCA
CTTCTTCAAATGAAGATATTAAACTCCATGTACGGTGGCTTCCTGGGAGAAGCGGTGACTCTGA
ACTAGTCAGCAGTAATGACCTCTTTATTATGGTTTCCCGCTTCTCTGAGGTCTGTGTCACTTTG
ACTTGGCTTTCGCTGCTGGATGTCTAAGCCTGACATCACCCTGGTTGGAATGTGCTACCTAAAG
GTCATTCTATGGAACTCAGTTCATCAGGCTGTGACAGGATGGTTTACCAGCTGATATGTCTGAA
CAAGCTCACAAAATAAACACACACCCCATCTTGTATT

hide sequence

RefSeq Acc Id:

XM_006253223 ⟹ XP_006253285

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	62,439,625 - 62,495,521 (-)	NCBI
mRatBN7.2	16	55,740,551 - 55,792,198 (-)	NCBI
Rnor_6.0	16	59,316,145 - 59,368,559 (-)	NCBI
Rnor_5.0	16	58,996,816 - 59,049,222 (-)	NCBI

Sequence:

show sequence

GGTCAGAGATGAGTTTGAAGTTAGTTTTCTCCTTCCGCCGTGAGTCCTGGGTGTTGACCTCAGG
TGGCCAGTCTTGGAGCAAGCTCCTTTACCCTCTGAGCTATCTCATAGGCACCTCATATTGTTTA
TTAGTTCTCCATCCTAACAGCTGAAGCTGGAGAATTCCATAGGACCATCTATGACAAGCCAAGA
GCAAGGATTCCTTAGATTTGTTCTCATGAGAAGTGTCAAACGTCACAGATAATGAGGTAATAAT
CCACTTACCTCCCTCTCCTCCCCACCCAGCACCAACAACTGCCACAGTTTAGATAGCCCTGTTT
TCTCTCTACCCTCTATTTTGGCTGAGCTGTGGAACTCTCAGATAAAAATACATAAGCTGGTTTT
CTGAAGCCTGGCTCTGTTTCCCTAGTCTACAAATATTCTTTCCATTTCCATAGTCATCACTCAA
AGTGCTCACGGCCAGGAGATAAATGCCTCTTATCATAACCTCAACTCCAGCCATCTTCTTTCCT
CCCTGCCCCCGGACAAGGGACTGATACTCAAACCCGCATATTATGGCATGAGTTTCCAATTAGA
GTCCACCCCCAAGGTAGCTGTGAGTGTGACCCAACACATTTGCCGACTGCGGCAGGATGCACTT
TCAACGGCTCCCATACCTTGCACAGCCATAAAATGTAAAAATAATGTAAAAATAATGTCTATGC
TCATTCTACCGTATTCCAGAGCTTCTGTCCCCTTGTTGTCGAGGTCCATTCCCATCCCCTGCAC
AAGGCTGAGGACTTCTGCTACTATCATATCTCAAAACTCTCAAAATTAAATTCTTATACCAAAA
TGGCGTACCTGCCCTGGCCGCCAGAATGCCTTCACTGAAATCATTTCCCTCATGTGTCTTATGA
AATGTAAACCAGGTCGCTTTCCCTCTGATCCTACCCTGTTCAGCTCTCTTTTATGATGTGATAT
TTACTGGGCTCCTGACTTGTACCACTCAATACTCTAAGGTATGTCAGTACTTAAGATGAATTCC
ATCCGCCATAACTGTAGCGTCCTTGAACAGAAAGAAAAAGGAGCACCGAGTGTCTTTCCTGTTG
GCTCAGGGTTCAAGAAGATGGGAAGCAGGCTAGTGAGTCTCCCTACCTCTTTTTAATCAAACGA
GGAGATGGCTCTTTTGTTATTCTGGACATTGCAGTAGAAGTCCAGACAGAAGTTCTCTCTGGAC
CACCCCAGTAGACGGAGTAAGAGAACTGCAGCACTATCCCTGAATTAAACCGTGTGATCTCCAA
TCCTCCTCCTAGGGGCGCATTATAAATGCACATAGGTGAGTCCCTACCAACCCCCATAACAGGA
CAGCAGCTCAACAGCATGGGATTCTTATCCAAAGGCCCGCAAAACATTACTGAATATGTCGGGG
TCCGATTCCGGGGAACATATAGTTTTTAAAAAGTACAGAGAACCCTGCGGGTAACTACGTTGTT
TACTAATAGGGGTCGAAGGTTATTAGCTATGACACTGAAAGCAATTAACACTATTATTGCAGAA
GCAATGATCTATGTCCATTTTGGGCTATCGCTTCTAAATTTCCACACTGCACTGTTGTGACAGA
CGGGGGTTTTGACTTGCTCCTTTTAGCAAGACATTGAAAAGATTAAACAAGCGTTGTCTTTTTC
AGGAAAAACCCAGAACCCGTGCAGTGACAGGTTGGACCTAATTCCTCCAATCCTGAGTCAGCCC
ACGTGCCCAGATACCCGGTAGAGATTTTTCCTTTACAGTGTGTGTTGTGGTCAGGATCAAAAGG
GAAGAGTTAGGCTTAGGGTCACGTGGGTGTCACCACAGGTACTGAGCTGCGCTTGGGGCCCCGC
CAGGTGTACCCGCCCAGAGGCGTCTCCCGCTTAGGACCCTTCACCCCACCGGACACTGGAGTAG
AGCGAGGCCGACCCATGGAAGTTGCATCCTGGACAGTCCGGGCTGCGACGCTGAAGAGCACCGA
GCCAGTGCTCGGCCGAGCCTCCCGCCCGGATCCCGGGCAAAGACCGCCCAAAACCTGCTGTTGA
CCTTCGTCTGCACTGCTCAATGGTGACCCGAGTCTTCGCTGTCCTAGTTGCAGCCATTTGGCAT
CCCCAAGACTGCCAGAGCACCCGGGATCTGCAAACCTGGGGCTTGGATTCTCTTCAGAGACTCA
TACTGAGTGGTGGATCTTGTGAAGGGCTCACTAACTCAATTCCTGCTCCTTTCATGTGTGTTAT
ATACTGAGAGCCCTGAGAAGGAACTGTTCCTCCCTGAGGAAGGAAACTGCCGTGATTTACCAAA
ACCAGAAATAATCCACATGATCACAAAATGAGTCAGGATGGATCCCGAAGCCGTGCAGCTGGAG
AAGCAGCACGTGCACAAGGTCTATGAGAGCACCGCCCCCTACTTCAGTGACCTTCAAAACAAAG
CTTGGCCCCGCGTCCGCCAGTTCCTGCAGGACCAGAAGCCAGGCAGCCTCATCGCTGACATTGG
TTGTGGAACTGGAAAGTATCTTAAAGTGAATAGCCAAGTACATACTCTGGGCTGTGACTACTGT
GGCCCTCTGGTAGAGATTGCCCGGAATAGAGGGTGTGAAGTCATGGTATGTGACAACCTTAATC
TCCCCTTTAGGGACCAGGGCTTCGATGCTATCATCTCCATAGGAGTCATACATCATTTCTCTAC
AAAACAGAGAAGAATCAGAGCAATAAAGGAAATGGCCAGGGTCTTAGCTCCCGGAGGCCAGCTG
ATGATTTACGTCTGGGCAATGGAACAGAAGAACCGACACTTTGAGAAACAGGATGTGCTTGTGC
CATGGAACAGGGCACTCTGTTCCCGGCTGCTGTCAGAATCCCACCAGTCGTGGGGGCATTCGTG
TGAGCATCCCACGAGCCAAGGCTACCAGGGCCCTGGCTCCGCGTGCAGCTGTGCAGTGTGTTTT
AAGGGCAGATGTGATTCCAAGCGGTCGCACAGCATGGACTACGGGCCTGCGGTGGCCAGAACCT
GCTGCGAAGCTATTTCGAAGGAAGGACAGCAAGAGAATGGATTATATAGCAATTTTGGAAAATC
CTTTCGCTCCTGGTTTTTTTCCAGGTCTTTGGATGAATCAACCCTGAGGAAGCAAATTGAAAGG
GTCAGGCCGATGAAAATCGAGGGCTGGGCCAACAGCACCGTGTCCCACCAGCCTTCCCGATACC
CCAGCGTAGACTTGCATGCCCAGGAGCCGTTTTCAACAAAAAGACCGAACTTAGATGAGGTGTT
CGTAGACGCATCTTCTCAAAGACACGTGGGCTGCCTGGGAGTACCCAGCACTTCAGACAACTTC
ATTGGACACAAGGGAGGAGAGAGTAGGAGGAAGGAGGGGGGCAATTTTCTGGACACCACTGATA
CCGGGAACAGTGTGGCTGCAAGAAATGGCGGTGATCGTTCTGCCAGAAAAATATTAAGGAGGGT
TTCTGCATTCGACTCCACGGACTCCACCTCAGAAGACCCAAGCTTTGTGGAAGGGCAACAGGAT
GGCCCAGATTCCAAAGCCTTCATGCGTTACTACCACGTGTTCCGGGAAGGTGAGCTGTCCAGCC
TGCTGCAGGAGTGTGTGTCTGAGCTGCAGGTTCTGAGCTCCGGCAATGACCATGGTAACTGGTG
CATCATCGCAGAGAAAAAGAGGAGCTGGGATTAACTACATCGCTCAAGGCAGAGGCTACAGCCC
ATCATCTGCTCAATGGGGCTGATGTGGACACCAGAATCGGCACCCTAGTTCATTGCTTTCAAAT
CCAGGTATGAGTCGGACCGTGAGCACTGTGCCCTCATCCTCCGAACTGTTGAGTAAGCATGAAG
GCTGGCATGTCCTGCCTCTGCTGCGGGATCTGCCTGCTGAAGTTTCAATCAAAGGATCCGAGGA
AGCAGTAGAAAGTAAACTTAAGTACAGACTTGATCTTATTCCTCCCAGAGATGAAATTATTACG
ATACGTGTACGTCAAGTGTCAGTATTATCTTTTGGTTTTTAAATAATCCCCTGTTAAATATACC
TTTTAAAAGTAGTAATTTTTAAAAATAAATTATGTTGGTTCTCAGGTAGTTACTTAGATCCCTG
TGGAAGGTAACAGAGACACCTGTGCTGTTGCTGGGCATGTGTTTAAGGTTCGCTGTGGTGGTAT
CTCGTTTCCGGACTTCGTTGCTAACTACATCAACCCTTCCAGTATAGCCCAGACCCTCTAAATT
ACATGCAAACGCCCTTAGGGATGATCGATGTTACTAATACTGTCTTCAGCATTGCTCTGAGGCT
TTTACAAGGCGCTATTAGCAGAGGGTTGGTGTTAAAGCAGACAGTTTGCATGCGGCGGAATCAG
CAAACATCCATGGCACCATTGACAGAAGAAAAAGTAAACAAAGGATTGTTAGCGTGCAGAGTGC
TTTACAGGGGTAGCAGATGGTATGTCCCCTGGTCACATTTTCCCCAAAGGCATTAGGAGCATAA
ATATCTAACTGAGGTTGTCCCAAAGTTATCCAGAGTTTTCAACTAGGAAGTGCATATCTGAGTT
AGCTAAGAGTCTAATTGGAGCCGTTTTACTTTGGCTGTGAGGACAGATCTGGAAATCGTCATGT
ATTTAGTGGACACATTACTGGGATTCGCTGCTGCATGCCATGGCATTTATTCCCTTGAAGGTGA
CCACATTAGATCATTGTATCAGTGACCTGGACGGAATCAAAGCTTGGTCACAAGTTGAATTTCT
GGTATTCTAGAGTGCAATGATTAGACTGGGTATGGTACAAATCAATACTCTTTTATTTTTAAAG
ACTTAATCATGAGTCTGATTAATTCTATGTTGTGGATCCCAATAACAATTATGACAGAATTCAA
GACTGAACTCAGGAGAAACAAAAATAAGTTGGCCAAGGAATATGGTTCCAGATAATTCGTTAAC
AAGCAGGAAATCAAATAGTCATTGTACTTTCTGGACCGATATAATGATGGAGATTGGATTAAAA
TCCAATCTTCACTTTCTTTTTTTCTCCCACTACAAAGTTAACAAAAATTGCAATGGATCATATT
TATTTGGTGTTTACCCTCTTCAGAGATTTTGCTGGACTGTATGAAAATGAAGCTACTTTTGAAA
AACACAACTCAAAAGGTGCTTTGAAAATGCAAAGTATATCTTGTAAACTTTAGAATGAATCAGA
TAATTCCTGAGGTTCTTTCAAGTCCAAGTTCCGTCTCTTCAACCCTGCTGTGGAAGTGGCATGT
GTGTCTTGTACTTTCCAGCGTACACTTTGTACAGGGAGGCATGAAAATAGGCATAGGGGTAAAG
CATAGATTAAAATTTACTGTGCCTTCCACTTCTTCAAATGAAGATATTAAACTCCATGTACGGT
GGCTTCCTGGGAGAAGCGGTGACTCTGAACTAGTCAGCAGTAATGACCTCTTTATTATGGTTTC
CCGCTTCTCTGAGGTCTGTGTCACTTTGACTTGGCTTTCGCTGCTGGATGTCTAAGCCTGACAT
CACCCTGGTTGGAATGTGCTACCTAAAGGTCATTCTATGGAACTCAGTTCATCAGGCTGTGACA
GGATGGTTTACCAGCTGATATGTCTGAACAAGCTCACAAAATAAACACACACCCCATCTTGTAT
T

hide sequence

RefSeq Acc Id:

XM_039094541 ⟹ XP_038950469

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	62,439,625 - 62,460,863 (-)	NCBI
mRatBN7.2	16	55,740,551 - 55,757,490 (-)	NCBI

RefSeq Acc Id:

XM_063275435 ⟹ XP_063131505

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	62,439,625 - 62,495,525 (-)	NCBI

RefSeq Acc Id:

XM_063275436 ⟹ XP_063131506

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	62,439,625 - 62,495,526 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100784	(Get FASTA)	NCBI Sequence Viewer
	NP_001423779	(Get FASTA)	NCBI Sequence Viewer
	NP_001423780	(Get FASTA)	NCBI Sequence Viewer
	XP_006253284	(Get FASTA)	NCBI Sequence Viewer
	XP_006253285	(Get FASTA)	NCBI Sequence Viewer
	XP_038950469	(Get FASTA)	NCBI Sequence Viewer
	XP_063131505	(Get FASTA)	NCBI Sequence Viewer
	XP_063131506	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM09210	(Get FASTA)	NCBI Sequence Viewer
	EDM09211	(Get FASTA)	NCBI Sequence Viewer
	EDM09212	(Get FASTA)	NCBI Sequence Viewer
	EDM09213	(Get FASTA)	NCBI Sequence Viewer
	EDM09214	(Get FASTA)	NCBI Sequence Viewer
	EDM09215	(Get FASTA)	NCBI Sequence Viewer
	EDM09216	(Get FASTA)	NCBI Sequence Viewer
	EDM09217	(Get FASTA)	NCBI Sequence Viewer
	EDM09218	(Get FASTA)	NCBI Sequence Viewer
	EDM09219	(Get FASTA)	NCBI Sequence Viewer
	EDM09220	(Get FASTA)	NCBI Sequence Viewer
	EDM09221	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000015062
	ENSRNOP00000015062.3
	ENSRNOP00000110498.1

RefSeq Acc Id:

NP_001100784 ⟸ NM_001107314

- UniProtKB:

D3ZQW3 (UniProtKB/TrEMBL), A6IVK2 (UniProtKB/TrEMBL), A6IVK5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDPEAVQLEKQHVHKVYESTAPYFSDLQNKAWPRVRQFLQDQKPGSLIADIGCGTGKYLKVNSQ
VHTLGCDYCGPLVEIARNRGCEVMVCDNLNLPFRDQGFDAIISIGVIHHFSTKQRRIRAIKEMA
RVLAPGGQLMIYVWAMEQKNRHFEKQDVLVPWNRALCSRLLSESHQSWGHSCEHPTSQGYQGPG
SACSCAVCFKGRCDSKRSHSMDYGPAVARTCCEAISKEGQQENGLYSNFGKSFRSWFFSRSLDE
STLRKQIERVRPMKIEGWANSTVSHQPSRYPSVDLHAQEPFSTKRPNLDEVFVDASSQRHVGCL
GVPSTSDNFIGHKGGESRRKEGGNFLDTTDTGNSVAARNGGDRSARKILRRVSAFDSTDSTSED
PSFVEGQQDGPDSKAFMRYYHVFREGELSSLLQECVSELQVLSSGNDHGNWCIIAEKKRSWD

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RefSeq Acc Id:

XP_006253285 ⟸ XM_006253223

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDPEAVQLEKQHVHKVYESTAPYFSDLQNKAWPRVRQFLQDQKPGSLIADIGCGTGKYLKVNSQ
VHTLGCDYCGPLVEIARNRGCEVMVCDNLNLPFRDQGFDAIISIGVIHHFSTKQRRIRAIKEMA
RVLAPGGQLMIYVWAMEQKNRHFEKQDVLVPWNRALCSRLLSESHQSWGHSCEHPTSQGYQGPG
SACSCAVCFKGRCDSKRSHSMDYGPAVARTCCEAISKEGQQENGLYSNFGKSFRSWFFSRSLDE
STLRKQIERVRPMKIEGWANSTVSHQPSRYPSVDLHAQEPFSTKRPNLDEVFVDASSQRHVGCL
GVPSTSDNFIGHKGGESRRKEGGNFLDTTDTGNSVAARNGGDRSARKILRRVSAFDSTDSTSED
PSFVEGQQDGPDSKAFMRYYHVFREGELSSLLQECVSELQVLSSGNDHGNWCIIAEKKRSWD

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RefSeq Acc Id:

XP_006253284 ⟸ XM_006253222

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDPEAVQLEKQHVHKVYESTAPYFSDLQNKAWPRVRQFLQDQKPGSLIADIGCGTGKYLKVNSQ
VHTLGCDYCGPLVEIARNRGCEVMVCDNLNLPFRDQGFDAIISIGVIHHFSTKQRRIRAIKEMA
RVLAPGGQLMIYVWAMEQKNRHFEKQDVLVPWNRALCSRLLSESHQSWGHSCEHPTSQGYQGPG
SACSCAVCFKGRCDSKRSHSMDYGPAVARTCCEAISKEGQQENGLYSNFGKSFRSWFFSRSLDE
STLRKQIERVRPMKIEGWANSTVSHQPSRYPSVDLHAQEPFSTKRPNLDEVFVDASSQRHVGCL
GVPSTSDNFIGHKGGESRRKEGGNFLDTTDTGNSVAARNGGDRSARKILRRVSAFDSTDSTSED
PSFVEGQQDGPDSKAFMRYYHVFREGELSSLLQECVSELQVLSSGNDHGNWCIIAEKKRSWD

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Ensembl Acc Id:

ENSRNOP00000015062 ⟸ ENSRNOT00000015062

RefSeq Acc Id:	XP_038950469 ⟸ XM_039094541
- Peptide Label:	isoform X3
- UniProtKB:	A6IVK9 (UniProtKB/TrEMBL), A6IVK5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131506 ⟸ XM_063275436
- Peptide Label:	isoform X3
- UniProtKB:	A6IVK9 (UniProtKB/TrEMBL), A6IVK5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131505 ⟸ XM_063275435
- Peptide Label:	isoform X2
- UniProtKB:	A6IVK5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000110498 ⟸ ENSRNOT00000154588

Protein Domains

Methyltransferase type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZQW3-F1-model_v2	AlphaFold	D3ZQW3	1-446	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1304810	AgrOrtholog
BioCyc Gene	G2FUF-11195	BioCyc
Ensembl Genes	ENSRNOG00000011253	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000015062	ENTREZGENE
	ENSRNOT00000015062.5	UniProtKB/TrEMBL
	ENSRNOT00000154588.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.150	UniProtKB/TrEMBL
InterPro	AlkB_tRNA_MeTrf/Diox	UniProtKB/TrEMBL
	Methyltransf_11	UniProtKB/TrEMBL
	SAM-dependent_MTases-like	UniProtKB/TrEMBL
KEGG Report	rno:306504	UniProtKB/TrEMBL
NCBI Gene	306504	ENTREZGENE
PANTHER	TRNA METHYLTRANSFERASE 9B-RELATED	UniProtKB/TrEMBL
	UNCHARACTERIZED	UniProtKB/TrEMBL
Pfam	Methyltransf_11	UniProtKB/TrEMBL
PhenoGen	Trmt9b	PhenoGen
RatGTEx	ENSRNOG00000011253	RatGTEx
Superfamily-SCOP	SSF53335	UniProtKB/TrEMBL
UniProt	A0ABK0M535_RAT	UniProtKB/TrEMBL
	A6IVK2	ENTREZGENE, UniProtKB/TrEMBL
	A6IVK5	ENTREZGENE, UniProtKB/TrEMBL
	A6IVK9	ENTREZGENE, UniProtKB/TrEMBL
	D3ZQW3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Trmt9b	tRNA methyltransferase 9B (putative)	LOC108348403	uncharacterized LOC108348403	Data merged from RGD:11520536	737654	PROVISIONAL
2018-01-26	Trmt9b	tRNA methyltransferase 9B (putative)	RGD1304810	similar to 6430573F11Rik protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-08-02	LOC108348403	uncharacterized LOC108348403			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-04-30	RGD1304810	similar to 6430573F11Rik protein	RGD1304810_predicted	similar to 6430573F11Rik protein (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1304810_predicted	similar to 6430573F11Rik protein (predicted)	LOC306504_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC306504_predicted	similar to 6430573F11Rik protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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