Cnot3 (CCR4-NOT transcription complex, subunit 3) - Rat Genome Database

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Gene: Cnot3 (CCR4-NOT transcription complex, subunit 3) Rattus norvegicus
Analyze
Symbol: Cnot3
Name: CCR4-NOT transcription complex, subunit 3
RGD ID: 1304771
Description: Predicted to be involved in positive regulation of metabolic process; regulation of stem cell population maintenance; and trophectodermal cell differentiation. Predicted to be located in cytosol and nucleus. Predicted to be part of CCR4-NOT core complex. Predicted to be active in P-body. Orthologous to human CNOT3 (CCR4-NOT transcription complex subunit 3); PARTICIPATES IN microRNA pathway; RNA degradation pathway; INTERACTS WITH bisphenol A; nitrofen; vinclozolin.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CCR4-NOT transcription complex subunit 3; LOC308311
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8174,471,284 - 74,487,527 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl174,470,566 - 74,487,527 (-)EnsemblGRCr8
mRatBN7.2165,555,924 - 65,572,167 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl165,555,924 - 65,572,167 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx171,004,048 - 71,020,291 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0179,427,022 - 79,443,265 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0172,754,167 - 72,770,170 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0164,130,823 - 64,147,066 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl164,130,908 - 64,147,251 (-)Ensemblrn6Rnor6.0
Rnor_5.0163,123,105 - 63,139,396 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4163,868,853 - 63,885,095 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera163,280,966 - 63,297,090 (-)NCBICelera
RGSC_v3.1163,945,601 - 63,961,798 (-)NCBI
Cytogenetic Map1q12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
CCR4-NOT complex  (IEA,ISO)
CCR4-NOT core complex  (IBA,IEA)
nucleus  (IEA)
P-body  (IBA,IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Adipocyte-specific disruption of mouse Cnot3 causes lipodystrophy. Li X, etal., FEBS Lett. 2017 Jan;591(2):358-368. doi: 10.1002/1873-3468.12550. Epub 2017 Jan 12.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. GOA pipeline RGD automated data pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Comprehensive gene review and curation RGD comprehensive gene curation
9. RNA decay machines: deadenylation by the Ccr4-not and Pan2-Pan3 complexes. Wahle E and Winkler GS, Biochim Biophys Acta. 2013 Jun-Jul;1829(6-7):561-70. doi: 10.1016/j.bbagrm.2013.01.003. Epub 2013 Jan 19.
Additional References at PubMed
PMID:19558367   PMID:20133598   PMID:22367759   PMID:30361391  


Genomics

Comparative Map Data
Cnot3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8174,471,284 - 74,487,527 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl174,470,566 - 74,487,527 (-)EnsemblGRCr8
mRatBN7.2165,555,924 - 65,572,167 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl165,555,924 - 65,572,167 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx171,004,048 - 71,020,291 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0179,427,022 - 79,443,265 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0172,754,167 - 72,770,170 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0164,130,823 - 64,147,066 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl164,130,908 - 64,147,251 (-)Ensemblrn6Rnor6.0
Rnor_5.0163,123,105 - 63,139,396 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4163,868,853 - 63,885,095 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera163,280,966 - 63,297,090 (-)NCBICelera
RGSC_v3.1163,945,601 - 63,961,798 (-)NCBI
Cytogenetic Map1q12NCBI
CNOT3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381954,137,762 - 54,155,681 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1954,137,710 - 54,155,708 (+)Ensemblhg38GRCh38
GRCh371954,641,478 - 54,659,419 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361959,333,261 - 59,351,239 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341959,333,260 - 59,351,239NCBI
Celera1951,682,719 - 51,700,732 (+)NCBICelera
Cytogenetic Map19q13.42NCBI
HuRef1950,957,822 - 50,975,744 (+)NCBIHuRef
CHM1_11954,642,739 - 54,660,727 (+)NCBICHM1_1
T2T-CHM13v2.01957,217,961 - 57,235,947 (+)NCBIT2T-CHM13v2.0
Cnot3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3973,646,717 - 3,664,108 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl73,648,267 - 3,664,108 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3873,645,247 - 3,661,109 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl73,645,268 - 3,661,109 (+)Ensemblmm10GRCm38
MGSCv3773,596,871 - 3,612,711 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3673,239,140 - 3,264,187 (+)NCBIMGSCv36mm8
Celera73,557,188 - 3,573,023 (+)NCBICelera
Cytogenetic Map7A1NCBI
cM Map72.1NCBI
Cnot3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955604109,340 - 122,001 (-)Ensembl
ChiLan1.0NW_004955604109,522 - 122,001 (-)NCBIChiLan1.0ChiLan1.0
CNOT3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22060,143,163 - 60,161,334 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11962,064,979 - 62,083,138 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01951,071,167 - 51,089,289 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11959,913,040 - 59,931,108 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1959,913,040 - 59,931,108 (+)EnsemblpanPan2panpan1.1
CNOT3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11103,057,392 - 103,070,612 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1103,057,542 - 103,066,887 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1103,119,211 - 103,132,429 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01103,702,778 - 103,715,996 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1103,702,790 - 103,715,996 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11103,340,821 - 103,354,027 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01103,102,254 - 103,115,463 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01103,815,980 - 103,829,201 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cnot3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093492,666,566 - 2,681,791 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936994258,938 - 273,765 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936994256,022 - 271,235 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNOT3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl655,973,612 - 55,991,287 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1655,975,628 - 55,993,140 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2653,227,109 - 53,243,171 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CNOT3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1646,814,695 - 46,832,657 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl646,819,903 - 46,836,838 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607326,905,339 - 26,921,474 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cnot3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248322,429,809 - 2,441,869 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248322,429,809 - 2,441,886 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Cnot3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12178,235,235 - 178,251,235 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cnot3
76 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:59
Count of miRNA genes:51
Interacting mature miRNAs:55
Transcripts:ENSRNOT00000018017
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)14345783787558729Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14630261591302615Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)14345783787558729Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)14630261591302615Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)14212296887122968Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)14630261591302615Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14345783787558729Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)14630261591302615Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)13070837587558729Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16540563796805205Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13456572679565726Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15190920691302615Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)14630261591302615Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)14350995288509952Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)14212296887122968Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)14630261591302615Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat

Markers in Region
AW533911  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2165,556,680 - 65,556,886 (+)MAPPERmRatBN7.2
Rnor_6.0164,131,580 - 64,131,785NCBIRnor6.0
Rnor_5.0163,123,862 - 63,124,067UniSTSRnor5.0
RGSC_v3.4163,869,609 - 63,869,814UniSTSRGSC3.4
Celera163,281,723 - 63,281,928UniSTS
RH 3.4 Map1740.9UniSTS
Cytogenetic Map1q12UniSTS
BF396308  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2165,557,031 - 65,557,260 (+)MAPPERmRatBN7.2
Rnor_6.0164,131,931 - 64,132,159NCBIRnor6.0
Rnor_5.0163,124,213 - 63,124,441UniSTSRnor5.0
RGSC_v3.4163,869,960 - 63,870,188UniSTSRGSC3.4
Celera163,282,074 - 63,282,302UniSTS
RH 3.4 Map1742.69UniSTS
Cytogenetic Map1q12UniSTS
BF397882  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2165,569,787 - 65,569,980 (+)MAPPERmRatBN7.2
Rnor_6.0164,144,687 - 64,144,879NCBIRnor6.0
Rnor_5.0163,136,969 - 63,137,161UniSTSRnor5.0
RGSC_v3.4163,882,716 - 63,882,908UniSTSRGSC3.4
Celera163,294,711 - 63,294,903UniSTS
RH 3.4 Map1729.3UniSTS
Cytogenetic Map1q12UniSTS
CNOT3_7840  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2165,555,822 - 65,556,304 (+)MAPPERmRatBN7.2
Rnor_6.0164,130,722 - 64,131,203NCBIRnor6.0
Rnor_5.0163,123,004 - 63,123,485UniSTSRnor5.0
RGSC_v3.4163,868,751 - 63,869,232UniSTSRGSC3.4
Celera163,280,865 - 63,281,346UniSTS
Cytogenetic Map1q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000088502   ⟹   ENSRNOP00000075261
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl174,470,566 - 74,487,527 (-)Ensembl
mRatBN7.2 Ensembl165,555,924 - 65,572,167 (-)Ensembl
Rnor_6.0 Ensembl164,130,908 - 64,147,251 (-)Ensembl
RefSeq Acc Id: NM_001107471   ⟹   NP_001100941
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8174,471,284 - 74,487,527 (-)NCBI
mRatBN7.2165,555,924 - 65,572,167 (-)NCBI
Rnor_6.0164,130,823 - 64,147,066 (-)NCBI
Rnor_5.0163,123,105 - 63,139,396 (-)NCBI
RGSC_v3.4163,868,853 - 63,885,095 (-)RGD
Celera163,280,966 - 63,297,090 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001100941 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL84932 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000075261
  ENSRNOP00000075261.3
RefSeq Acc Id: NP_001100941   ⟸   NM_001107471
- UniProtKB: D3ZUV9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000075261   ⟸   ENSRNOT00000088502

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZUV9-F1-model_v2 AlphaFold D3ZUV9 1-751 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689662
Promoter ID:EPDNEW_R187
Type:multiple initiation site
Name:Cnot3_1
Description:CCR4-NOT transcription complex, subunit 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0164,147,077 - 64,147,137EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304771 AgrOrtholog
BioCyc Gene G2FUF-61038 BioCyc
Ensembl Genes ENSRNOG00000053234 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000088502 ENTREZGENE
  ENSRNOT00000088502.3 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.1020 UniProtKB/TrEMBL
InterPro CCR4-NOT_su2/3/5_N_sf UniProtKB/TrEMBL
  CCR4-NOT_su3/5 UniProtKB/TrEMBL
  NOT UniProtKB/TrEMBL
  Not2/3/5 UniProtKB/TrEMBL
  Not_N UniProtKB/TrEMBL
NCBI Gene 308311 ENTREZGENE
PANTHER PTHR23326 UniProtKB/TrEMBL
Pfam NOT2_3_5 UniProtKB/TrEMBL
  Not3 UniProtKB/TrEMBL
PhenoGen Cnot3 PhenoGen
PIRSF NOT_su_3_5 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000053234 RatGTEx
UniProt D3ZUV9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Cnot3  CCR4-NOT transcription complex, subunit 3   Cnot3_predicted  CCR4-NOT transcription complex, subunit 3 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Cnot3_predicted  CCR4-NOT transcription complex, subunit 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED