Advanced Search (OLGA)

Gene: Iws1 (interacts with SUPT6H, CTD assembly factor 1) Rattus norvegicus

Analyze

Symbol:

Iws1

Name:

interacts with SUPT6H, CTD assembly factor 1

RGD ID:

1304762

Description:

Predicted to be involved in gene expression; regulation of mRNA export from nucleus; and regulation of mRNA processing. Predicted to act upstream of or within in utero embryonic development. Predicted to be active in nucleus. Orthologous to human IWS1 (interacts with SUPT6H, CTD assembly factor 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 3,4-methylenedioxymethamphetamine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

IWS1 homolog; IWS1 homolog (S. cerevisiae); IWS1, SUPT6H interacting protein; IWS1-like protein; LOC291705; MGC124986; protein IWS1 homolog; RGD1304762; similar to hypothetical protein FLJ10006

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	IWS1 (interacts with SUPT6H, CTD assembly factor 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Iws1 (IWS1, SUPT6 interacting protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Iws1 (interacts with SUPT6H, CTD assembly factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	IWS1 (interacts with SUPT6H, CTD assembly factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	IWS1 (interacts with SUPT6H, CTD assembly factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Iws1 (interacts with SUPT6H, CTD assembly factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	IWS1 (interacts with SUPT6H, CTD assembly factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	IWS1 (interacts with SUPT6H, CTD assembly factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Iws1 (interacts with SUPT6H, CTD assembly factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Iws1 (interacts with SUPT6H, CTD assembly factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PNP (purine nucleoside phosphorylase)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Iws1 (IWS1, SUPT6 interacting protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	IWS1 (interacts with SUPT6H, CTD assembly factor 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F13B12.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F13B12.1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG9915	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG9915	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	SPN1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	SPN1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	iws1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	23,969,352 - 24,011,560 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	18	23,969,733 - 24,010,415 (+)	Ensembl				GRCr8
mRatBN7.2	18	23,695,496 - 23,737,363 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	23,695,425 - 23,736,172 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	18	23,823,597 - 23,861,406 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	24,579,583 - 24,617,407 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	23,918,579 - 23,956,389 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	24,849,508 - 24,891,339 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	24,849,545 - 24,880,317 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	18	24,564,090 - 24,606,101 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	18	24,489,571 - 24,524,125 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	18	23,448,049 - 23,478,821 (+)	NCBI		Celera
RGSC_v3.1	18	24,494,575 - 24,550,538 (+)	NCBI
Cytogenetic Map	18	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

2,4,6-tribromophenol (ISO)

2,4-dinitrotoluene (EXP)

3,3',5,5'-tetrabromobisphenol A (ISO)

3,4-methylenedioxymethamphetamine (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4-hydroxyphenyl retinamide (ISO)

aflatoxin B1 (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

cannabidiol (ISO)

chlorpyrifos (ISO)

choline (ISO)

clobetasol (ISO)

coumarin (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (ISO)

dexamethasone (ISO)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

gentamycin (EXP)

hydrogen peroxide (ISO)

indometacin (ISO)

inulin (ISO)

ivermectin (ISO)

L-methionine (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methapyrilene (EXP)

methylparaben (ISO)

ozone (ISO)

PCB138 (ISO)

perfluorooctane-1-sulfonic acid (ISO)

potassium chromate (ISO)

resveratrol (ISO)

rotenone (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

Soman (EXP)

thimerosal (ISO)

titanium dioxide (ISO)

torcetrapib (ISO)

trichostatin A (ISO)

tungsten (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromatin remodeling (IEA,ISO,ISS)

DNA-templated transcription (IEA)

gene expression (ISO)

in utero embryonic development (ISO)

mRNA processing (IEA)

mRNA transport (IEA)

poly(A)+ mRNA export from nucleus (IBA)

regulation of mRNA export from nucleus (IEA,ISO,ISS)

regulation of mRNA processing (IEA,ISO,ISS)

RNA splicing (IEA)

transcription elongation-coupled chromatin remodeling (IEA,ISO)

Cellular Component

nucleoplasm (IEA,ISO)

nucleus (IBA,IEA,ISO,ISS)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15489334	PMID:17234882	PMID:19141475

Genomics

Comparative Map Data

Iws1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	23,969,352 - 24,011,560 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	18	23,969,733 - 24,010,415 (+)	Ensembl				GRCr8
mRatBN7.2	18	23,695,496 - 23,737,363 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	23,695,425 - 23,736,172 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	18	23,823,597 - 23,861,406 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	24,579,583 - 24,617,407 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	23,918,579 - 23,956,389 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	24,849,508 - 24,891,339 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	24,849,545 - 24,880,317 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	18	24,564,090 - 24,606,101 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	18	24,489,571 - 24,524,125 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	18	23,448,049 - 23,478,821 (+)	NCBI		Celera
RGSC_v3.1	18	24,494,575 - 24,550,538 (+)	NCBI
Cytogenetic Map	18	p12	NCBI

IWS1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	127,480,812 - 127,527,336 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	127,436,207 - 127,526,886 (-)	Ensembl			hg38	GRCh38
GRCh37	2	128,238,388 - 128,284,065 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	127,954,860 - 128,000,514 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	2	121,549,354 - 121,595,041 (-)	NCBI		Celera
Cytogenetic Map	2	q14.3	NCBI
HuRef	2	120,545,348 - 120,591,062 (-)	NCBI		HuRef
CHM1_1	2	128,242,935 - 128,288,602 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	127,916,064 - 127,962,573 (-)	NCBI		T2T-CHM13v2.0

Iws1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	32,200,377 - 32,237,384 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	32,200,794 - 32,237,381 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	18	32,067,326 - 32,104,331 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	32,067,741 - 32,104,328 (+)	Ensembl			mm10	GRCm38
MGSCv37	18	32,227,388 - 32,263,985 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	18	32,210,774 - 32,240,318 (+)	NCBI		MGSCv36	mm8
Celera	18	32,548,980 - 32,585,919 (+)	NCBI		Celera
Cytogenetic Map	18	B1	NCBI
cM Map	18	17.92	NCBI

Iws1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955459	3,021,764 - 3,063,128 (+)	Ensembl
ChiLan1.0	NW_004955459	3,021,320 - 3,063,363 (+)	NCBI	ChiLan1.0	ChiLan1.0

IWS1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	48,118,820 - 48,221,507 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	48,133,798 - 48,200,382 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	32,750,718 - 32,810,360 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	128,132,447 - 128,192,258 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	128,146,087 - 128,192,258 (-)	Ensembl			panPan2	panpan1.1

IWS1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	19	23,081,625 - 23,122,618 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	19	23,082,096 - 23,122,618 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	19	23,329,380 - 23,370,167 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	19	24,408,165 - 24,448,927 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	19	24,408,412 - 24,448,918 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	19	23,112,151 - 23,152,919 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	19	23,306,466 - 23,347,248 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	19	24,438,452 - 24,479,477 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Iws1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	97,813,621 - 97,851,019 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936469	43,766,663 - 43,808,333 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936469	43,766,699 - 43,805,919 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

IWS1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	59,822,822 - 59,879,422 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	15	59,822,789 - 59,875,867 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

IWS1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	2,688,690 - 2,747,457 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	2,689,031 - 2,734,828 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666061	20,024,617 - 20,070,770 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Iws1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624732	13,966,393 - 14,001,713 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624732	13,961,929 - 14,002,003 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Iws1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	15	12,144,308 - 12,176,226 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Iws1
384 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	314
Count of miRNA genes:	197
Interacting mature miRNAs:	226
Transcripts:	ENSRNOT00000061011
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2301410	Bp317	Blood pressure QTL 317		0.004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	12219237	26822399	Rat
2301409	Cm70	Cardiac mass QTL 70		0.001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	18	7065728	52065728	Rat
1358358	Sradr6	Stress Responsive Adrenal Weight QTL 6	2.49		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	18	22015562	61600538	Rat
1331735	Rf44	Renal function QTL 44	2.981		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	18	15642280	31610627	Rat
61382	Bp46	Blood pressure QTL 46	18.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	12216684	31644508	Rat
12904716	Am21	Aortic mass QTL 21		0.005	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	7065728	52065728	Rat
1331741	Bp232	Blood pressure QTL 232	3.59112		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	23494057	85487725	Rat
8552968	Pigfal19	Plasma insulin-like growth factor 1 level QTL 19	11.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	18	1	26032889	Rat
12904714	Cm131	Cardiac mass QTL 131		0.002	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	7065728	52065728	Rat
12904715	Cm132	Cardiac mass QTL 132		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	7065728	52065728	Rat
1331781	Scl28	Serum cholesterol level QTL 28	3.995		blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	18	1	25071266	Rat
6903345	Bp349	Blood pressure QTL 349	3.9		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	3917226	48917226	Rat
2313082	Bss85	Bone structure and strength QTL 85	0.8	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	18	15226101	42690662	Rat
6903347	Bp350	Blood pressure QTL 350	4.4		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	1	31610627	Rat
2312568	Glom21	Glomerulus QTL 21	2	0.005	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	18	5460455	42690191	Rat
6903349	Bp351	Blood pressure QTL 351	3.5		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	3917226	48917226	Rat
6903351	Bp352	Blood pressure QTL 352	3.3		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	3917226	48917226	Rat
1331766	Bp236	Blood pressure QTL 236	3.022		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	1	31610627	Rat
631264	Scl22	Serum cholesterol level QTL 22	6.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	18	12216684	31644508	Rat
1331775	Bp235	Blood pressure QTL 235	3.201		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	15642280	31610627	Rat
2325839	Bp348	Blood pressure QTL 348		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	1	44930869	Rat
12904680	Bw189	Body weight QTL 189		0.019	body mass (VT:0001259)	body weight (CMO:0000012)	18	12219237	26822399	Rat
1600373	Mamtr6	Mammary tumor resistance QTL 6			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	18	19553532	85493247	Rat
2293708	Bss46	Bone structure and strength QTL 46	8.8	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	18	12066482	57066482	Rat
1641910	Colcr3	Colorectal carcinoma resistance QTL 3	5.02	0.000007	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	18	1	25022372	Rat
12904693	Am20	Aortic mass QTL 20		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	12219237	26822399	Rat
1578667	Bss21	Bone structure and strength QTL 21	3.5		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	18	12066482	85493247	Rat
12904695	Kidm73	Kidney mass QTL 73		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	12219237	26822399	Rat
2312598	Bp340	Blood pressure QTL 340		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	3811902	30809809	Rat
12904689	Cm128	Cardiac mass QTL 128		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	18	12219237	26822399	Rat
12904690	Cm129	Cardiac mass QTL 129		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	12219237	26822399	Rat
2300180	Bmd67	Bone mineral density QTL 67	4.8	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	18	1	34566578	Rat
12904691	Cm130	Cardiac mass QTL 130		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	12219237	26822399	Rat
9590248	Scort10	Serum corticosterone level QTL 10	19.71	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	18	1	26032889	Rat
2299160	Iddm35	Insulin dependent diabetes mellitus QTL 35	2.79		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	18	4482648	49482648	Rat
1331753	Bp231	Blood pressure QTL 231	3.643		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	1	54490981	Rat
1578661	Bss20	Bone structure and strength QTL 20	3.7		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	18	12066482	85493247	Rat
11565454	Kidm59	Kidney mass QTL 59		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	7065728	52065728	Rat
1331754	Bp230	Blood pressure QTL 230	4.61609		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	15642280	86134022	Rat
2293661	Bss50	Bone structure and strength QTL 50	4.64	0.0003	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	18	1	34566578	Rat
61375	Bp41	Blood pressure QTL 41	2.4		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	18	4307354	49307354	Rat

Markers in Region

BF399129

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	23,710,093 - 23,710,313 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	24,864,110 - 24,864,329	NCBI	Rnor6.0
Rnor_5.0	18	24,578,979 - 24,579,198	UniSTS	Rnor5.0
RGSC_v3.4	18	24,504,135 - 24,504,354	UniSTS	RGSC3.4
Celera	18	23,462,614 - 23,462,833	UniSTS
RH 3.4 Map	18	315.5	UniSTS
Cytogenetic Map	18	p12	UniSTS

BE118002

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	23,726,103 - 23,726,244 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	24,880,119 - 24,880,259	NCBI	Rnor6.0
Rnor_5.0	18	24,594,881 - 24,595,021	UniSTS	Rnor5.0
RGSC_v3.4	18	24,523,927 - 24,524,067	UniSTS	RGSC3.4
Celera	18	23,478,623 - 23,478,763	UniSTS
RH 3.4 Map	18	314.3	UniSTS
Cytogenetic Map	18	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001034918	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001398635	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254573	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254574	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600919	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277254	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005496012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005496013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC112062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC104700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227776	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000061011 ⟹ ENSRNOP00000057730

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	23,969,740 - 24,007,550 (+)	Ensembl
mRatBN7.2 Ensembl	18	23,695,527 - 23,726,302 (+)	Ensembl
Rnor_6.0 Ensembl	18	24,849,545 - 24,880,317 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000085516 ⟹ ENSRNOP00000069847

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	23,969,733 - 24,009,470 (+)	Ensembl
mRatBN7.2 Ensembl	18	23,695,425 - 23,726,276 (+)	Ensembl
Rnor_6.0 Ensembl	18	24,849,553 - 24,880,282 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095752 ⟹ ENSRNOP00000090115

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	23,969,737 - 24,010,410 (+)	Ensembl
mRatBN7.2 Ensembl	18	23,695,502 - 23,734,339 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000102322 ⟹ ENSRNOP00000085053

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	23,969,740 - 24,007,550 (+)	Ensembl
mRatBN7.2 Ensembl	18	23,695,502 - 23,720,740 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112252 ⟹ ENSRNOP00000091736

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	23,969,733 - 24,010,415 (+)	Ensembl
mRatBN7.2 Ensembl	18	23,695,502 - 23,736,172 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114318 ⟹ ENSRNOP00000095799

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	23,969,740 - 24,007,550 (+)	Ensembl
mRatBN7.2 Ensembl	18	23,695,771 - 23,726,276 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000158424 ⟹ ENSRNOP00000102505

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	23,971,114 - 24,007,550 (+)	Ensembl

RefSeq Acc Id:

NM_001034918 ⟹ NP_001030090

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	23,969,740 - 24,007,550 (+)	NCBI
mRatBN7.2	18	23,695,500 - 23,733,314 (+)	NCBI
Rnor_6.0	18	24,849,545 - 24,880,317 (+)	NCBI
Rnor_5.0	18	24,564,090 - 24,606,101 (+)	NCBI
RGSC_v3.4	18	24,489,571 - 24,524,125 (+)	RGD
Celera	18	23,448,049 - 23,478,821 (+)	RGD

Sequence:

show sequence

GCCATTTTGGCCCCAGAGGTGCTTCTGGGAAGTTGAGCGCGGTTCTTCACTTTGCCGGTCGGTG
AGGTACGGCCCTGTTTAGTAACTGGGGTTTCCCGGTCGAAGCGTCGGCGCCCGCCGCTGCCGAC
TTCTCCAGAGTCTCGGGGGAGGCAGAAGCGCGCTGCTGTCGAGAGAGGTCACTCCGCCAGGAAG
GACGTGACGGGGGCGGCGCGTGGCGCGGACACTCCCCGCCGAGAGCCCGCCTGCCATGGACTCG
GAGTACTACAGCGGTGACCAGTCAGATGATGGTGGTGCAACCCCAGTACAGGACGAGCGGGATT
CAGGGTCAGATGGTGAGGATGATGTAAACGAGCAGCACTCCGGATCCGACACTGGAAGTGTAGA
CCGCCATTCAGAGAATGAAACTAGTGATAGAGAAGATGGCTTGACCAAGATACATAATGGAACA
GACTCTGAGAATGATGAGCCCTCCAATGTTCATGCCAGTGACTCTGAAAGTGAGGAGCTTCACA
GGCCAAAAGACAGTGACTCTGAATCCGAGGAACATGCAGAGTCTCCTGCCAGTGATTCTGAAAA
CGAAGCTGTCCACCAGCAGGGGAGTGACTCTGAAAAGGAAGAGCTTCTTAATGGGCATGCAAGT
GACTCTGAAAAGGAAGAGGGTAGAAAGCATGCAGCCAGTGACTCTGAAACCGAGGACACTCTGC
AGCCTCAGGGCAGCGAGTCTGACAGTGAAGATCCCCCAAGGCCACAGGCCAGTGATTCAGAAAG
CGAGGAGCCTCCCAAACCTCGGATCAGTGATTCAGAAAGCGAGGAGCTCCCCAAACCTCGGATC
AGTGACTCAGAAAGTGAGGATCCTCCAAGGCCCCAGGTCAGTGACTCAGAAAGTGAGGAGCTCC
CCAAACCCCGAGTCAGTGATTCAGAAAGTGAGGATCCCCCAAGGCCACAGGCTAGTGACTCGGA
AAGTGAGGAGCTCCCCAAACCCCGAGTCAGCGACTCGGAAAGTGAGGACCCTCAGAAAGGACCT
GCTAGTGATTCTGAAGCTGAGGATGCCTCCAGACATAAAGAAAAGCCAGAGTCAGAGGACAGTG
ATGGGGAGAATAAGAGGGAAGACTCTGAAGTGCAGAATGAGTCAGACGGCCATGCAGACAGAAA
AGGACTCCACAGCTCTGACAGCGAGGAGGAAGAACCCAAGAGGCAAAAGATTGACAGTGATGAC
GACGGAGAAAAGGAGGGGGATGAGAAAGTAGCAAAGCGGAAGGCTGCCGTGCTTTCTGATAGTG
AGGACGAAGACAAAGCATCAGCAGCAAAGAAGAGTCGAGTTATCTCTGATGCTGATGATTCTGA
TAGTGATGTTGTATCAGACAAATCAGGCAAAAGAGAGAAGACGGTAGCATCTGATAGTGAAGAA
GAAGTCGGGAAAGAAGAGTCTTCTGTAAAGAAGAGTGAAGAGAAGGATCTGTTTGGGAGTGATA
GTGAATCAGGCAATGAAGAAGAAAATCTTATTGCAGATATATTTGGAGAATCTGGTGATGAAGA
GGAAGAGGAATTTACAGGATTTAACCAAGAAGATTTGGAGGAAGAGAAAAATGAAACACAGCTA
AAAGAAGCAGAAGATTCTGATTCCGACGATAACATAAAGAGAGGAAAGCATATGGACTTTCTGT
CAGATTTTGAGATGATGTTACAACGAAAAAAGAGCATGTGTGGCAAACGCAGACGAAATCGAGA
TGGGGGCACTTTTATTAGTGACGCAGATGATGTCGTGAGTGCCATGATTGTCAAGATGAACGAA
GCTGCTGAGGAAGACAGGCAATTGAATAATCAAAAAAAGCCTGCTCTGAAAAAATTAACCTTAT
TGCCTACTGTGGTTATGCACCTTAAAAAGCAGGACCTTAAAGAAACATTTATTGACAGTGGTGT
GATGTCTGCCATTAAAGAGTGGCTCTCACCTCTACCAGATAGGAGTTTGCCTGCACTGAAGATT
CGGGAGGAATTGTTAAAGATTCTGCAAGAGCTACCTAGTGTGAGCCAAGAGACCCTGAAGCACA
GTGGGATTGGCCGAGCAGTGATGTATCTGTATAAACATCCTAAGGAATCAAGGTCCAACAAGGA
CATGGCAGGGAAACTAATCAATGAGTGGTCTCGGCCCATATTTGGTCTTACCTCAAACTATAAA
GGAATGACAAGAGAAGAAAGGGAGCAGAGAGATCTAGAACAAATGCCACAGCGACGAAGAATGA
GCAGCACTGGTGGTCAGACACCACGAAGAGACCTGGAAAAGGTACTAACAGGAGAGGAAAAGGC
TCTTAGACCTGGAGATCCTGGCTTCTGTGCCCGTGCGAGAGTCCCAATGCCATCAAACAAGGAC
TATGTTGTCAGGCCCAAGTGGAATGTAGAAATGGAGTCATCCAGGCCTGGTATTCTTAAAAAGG
GTCTAAGTCGATTGGAAAAGCATAAGAGGCGGTTTGCAGAGCAGAAGAGGCTCAGCCAAATGCA
CCGTGCTGTCAAGTTCAGCATCGAAGGCAACAGAATGCCCCTGTAGTCCTGGCCCTTCCACAGT
GTGTATCTCAGAGTTTCAGGCAACCTCCAAGAAAGGTATCAGTCGGCTGGATAAACAGATGAGA
AAGTTCACAGATATCAGGAAAAAAAGCAGATCTGCACATGCAGTGAAAATCAGCATCGAGGGCA
ATAAAATGCCATTGTGACCTTGCCTGGGACGTGTCCCCATCTCTAAAAAAATGCACAGTGGACT
ATCGAGAAAGAAGATGCTTTTAAATGTTTTAGTGTGTCTCTCAATGGTTCCATTTGTATCATCT
GTTGTTGTAGGACTAACATTTCTCTCTGTTGTATTTAAGACCAGTTGTCTGCTTTGTACAGAAG
AGTACTTACTACTCCTGCTTCTATCAACTGTACGTAATAAAATTTCATTATGGTTTTGAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AA

hide sequence

RefSeq Acc Id:

NM_001398635 ⟹ NP_001385564

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	23,969,740 - 24,007,550 (+)	NCBI
mRatBN7.2	18	23,695,500 - 23,733,314 (+)	NCBI

RefSeq Acc Id:

XM_006254572 ⟹ XP_006254634

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	23,969,352 - 24,000,237 (+)	NCBI
mRatBN7.2	18	23,695,496 - 23,726,005 (+)	NCBI
Rnor_6.0	18	24,849,508 - 24,880,115 (+)	NCBI
Rnor_5.0	18	24,564,090 - 24,606,101 (+)	NCBI

Sequence:

show sequence

CCTGCGCACTGCATTTCTCTGAGGGCGGTGGGCAGGCGCCATTTTGGCCCCAGAGGTGCTTCTG
GGAAGTTGAGCGCGGTTCTTCACTTTGCCGGTCGGTGAGGTACGGCCCTGTTTAGTAACTGGGG
TTTCCCGGTCGAAGCGTCGGCGCCCGCCGCTGCCGACTTCTCCAGAGTCTCGGGGGAGGCAGAA
GCGCGCTGCTGTCGAGAGAGGTCACTCCGCCAGGAAGGACGTGACGGGGGCGGCGCGTGGCGCG
GACACTCCCCGCCGAGAGCCCGCCTGCCATGGACTCGGAGTACTACAGCGGTGACCAGTCAGAT
GATGGTGGTGCAACCCCAGTACAGGACGAGCGGGATTCAGGGTCAGATGGTGAGGATGATGTAA
ACGAGCAGCACTCCGGATCCGACACTGGAAGTGTAGACCGCCATTCAGAGAATGAAACTAGTGA
TAGAGAAGATGGCTTGACCAAGATACATAATGGAACAGACTCTGAGAATGATGAGCCCTCCAAT
GTTCATGCCAGTGACTCTGAAAGTGAGGAGCTTCACAGGCCAAAAGACAGTGACTCTGAATCCG
AGGAACATGCAGAGTCTCCTGCCAGTGATTCTGAAAACGAAGCTGTCCACCAGCAGGGGAGTGA
CTCTGAAAAGGAAGAGCTTCTTAATGGGCATGCAAGTGACTCTGAAAAGGAAGAGGGTAGAAAG
CATGCAGCCAGTGACTCTGAAACCGAGGACACTCTGCAGCCTCAGGGCAGCGAGTCTGACAGTG
AAGATCCCCCAAGGCCACAGGCCAGTGATTCAGAAAGCGAGGAGCCTCCCAAACCTCGGATCAG
TGATTCAGAAAGCGAGGAGCTCCCCAAACCTCGGATCAGTGACTCAGAAAGTGAGGATCCTCCA
AGGCCCCAGGTCAGTGACTCAGAAAGTGAGGAGCTCCCCAAACCCCGAGTCAGTGATTCAGAAA
GTGAGGATCCCCCAAGGCCACAGGCTAGTGACTCGGAAAGTGAGGAGCTCCCCAAACCCCGAGT
CAGCGACTCGGAAAGTGAGGACCCTCAGAAAGGACCTGCTAGTGATTCTGAAGCTGAGGATGCC
TCCAGACATAAAGAAAAGCCAGAGTCAGAGGACAGTGATGGGGAGAATAAGAGGGAAGACTCTG
AAGTGCAGAATGAGTCAGACGGCCATGCAGACAGAAAAGGACTCCACAGCTCTGACAGCGAGGA
GGAAGAACCCAAGAGGCAAAAGATTGACAGTGATGACGACGGAGAAAAGGAGGGGGATGAGAAA
GTAGCAAAGCGGAAGGCTGCCGTGCTTTCTGATAGTGAGGACGAAGACAAAGCATCAGCAGCAA
AGAAGAGTCGAGTTATCTCTGATGCTGATGATTCTGATAGTGATGTTGTATCAGACAAATCAGG
CAAAAGAGAGAAGACGGTAGCATCTGATAGTGAAGAAGAAGTCGGGAAAGAAGAGTCTTCTGTA
AAGAAGAGTGAAGAGAAGGATCTGTTTGGGAGTGATAGTGAATCAGGCAATGAAGAAGAAAATC
TTATTGCAGATATATTTGGAGAATCTGGTGATGAAGAGGAAGAGGAATTTACAGGATTTAACCA
AGAAGATTTGGAGGAAGAGAAAAATGAAACACAGCTAAAAGAAGCAGAAGATTCTGATTCCGAC
GATAACATAAAGAGAGGAAAGCATATGGACTTTCTGTCAGATTTTGAGATGATGTTACAACGAA
AAAAGAGCATGTGTGGCAAACGCAGACGAAATCGAGATGGGGGCACTTTTATTAGTGACGCAGA
TGATGTCGTGAGTGCCATGATTGTCAAGATGAACGAAGCTGCTGAGGAAGACAGGCAATTGAAT
AATCAAAAAAAGCCTGCTCTGAAAAAATTAACCTTATTGCCTACTGTGGTTATGCACCTTAAAA
AGCAGGACCTTAAAGAAACATTTATTGACAGTGGTGTGATGTCTGCCATTAAAGAGTGGCTCTC
ACCTCTACCAGATAGGAGTTTGCCTGCACTGAAGATTCGGGAGGAATTGTTAAAGATTCTGCAA
GAGCTACCTAGTGTGAGCCAAGAGACCCTGAAGCACAGTGGGATTGGCCGAGCAGTGATGTATC
TGTATAAACATCCTAAGGAATCAAGGTCCAACAAGGACATGGCAGGGAAACTAATCAATGAGTG
GTCTCGGCCCATATTTGGTCTTACCTCAAACTATAAAGGAATGACAAGAGAAGAAAGGGAGCAG
AGAGATCTAGAACAAATGCCACAGCGACGAAGAATGAGCAGCACTGGTGGTCAGACACCACGAA
GAGACCTGGAAAAGGTACTAACAGGAGAGGAAAAGGCTCTTAGACCTGGAGATCCTGGCTTCTG
TGCCCGTGCGAGAGTCCCAATGCCATCAAACAAGGACTATGTTGTCAGGCCCAAGTGGAATGTA
GAAATGGAGTCATCCAGGCCTGGTATTCTTAAAAAGGGTCTAAGTCGATTGGAAAAGCATAAGA
GGCGGTTTGCAGAGCAGAAGAGGCTCAGCCAAATGCACCGTGCTGTCAAGTTCAGCATCGAAGG
CAACAGAATGCCCCTGTAGTCCTGGCCCTTCCACATTTCAGGCAACCTCCAAGAAAGGTATCAG
TCGGCTGGATAAACAGATGAGAAAGTTCACAGATATCAGGAAAAAAAGCAGATCTGCACATGCA
GTGAAAATCAGCATCGAGGGCAATAAAATGCCATTGTGACCTTGCCTGGGACGTGTCCCCATCT
CTAAAA

hide sequence

RefSeq Acc Id:

XM_006254573 ⟹ XP_006254635

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	23,969,352 - 24,007,550 (+)	NCBI
mRatBN7.2	18	23,695,496 - 23,726,299 (+)	NCBI
Rnor_6.0	18	24,849,508 - 24,880,314 (+)	NCBI
Rnor_5.0	18	24,564,090 - 24,606,101 (+)	NCBI

Sequence:

show sequence

CCTGCGCACTGCATTTCTCTGAGGGCGGTGGGCAGGCGCCATTTTGGCCCCAGAGGTGCTTCTG
GGAAGTTGAGCGCGGTTCTTCACTTTGCCGGTCGGTGAGGTACGGCCCTGTTTAGTAACTGGGG
TTTCCCGGTCGAAGCGTCGGCGCCCGCCGCTGCCGACTTCTCCAGAGTCTCGGGGGAGGCAGAA
GCGCGCTGCTGTCGAGAGAGGTCACTCCGCCAGGAAGGACGTGACGGGGGCGGCGCGTGGCGCG
GACACTCCCCGCCGAGAGCCCGCCTGCCATGGACTCGGAGTACTACAGCGGTGACCAGTCAGAT
GATGGTGGTGCAACCCCAGTACAGGACGAGCGGGATTCAGGGTCAGATGGTGAGGATGATGTAA
ACGAGCAGCACTCCGGATCCGACACTGGAAGTGTAGACCGCCATTCAGAGAATGAAACTAGTGA
TAGAGAAGATGGCTTGACCAAGATACATAATGGAACAGACTCTGAGAATGATGAGCCCTCCAAT
GTTCATGCCAGTGACTCTGAAAGTGAGGAGCTTCACAGGCCAAAAGACAGTGACTCTGAATCCG
AGGAACATGCAGAGTCTCCTGCCAGTGATTCTGAAAACGAAGCTGTCCACCAGCAGGGGAGTGA
CTCTGAAAAGGAAGAGCTTCTTAATGGGCATGCAAGTGACTCTGAAAAGGAAGAGGGTAGAAAG
CATGCAGCCAGTGACTCTGAAACCGAGGACACTCTGCAGCCTCAGGGCAGCGAGTCTGACAGTG
AAGATCCCCCAAGGCCACAGGCCAGTGATTCAGAAAGCGAGGAGCCTCCCAAACCTCGGATCAG
TGATTCAGAAAGCGAGGAGCTCCCCAAACCTCGGATCAGTGACTCAGAAAGTGAGGATCCTCCA
AGGCCCCAGGTCAGTGACTCAGAAAGTGAGGAGCTCCCCAAACCCCGAGTCAGTGATTCAGAAA
GTGAGGATCCCCCAAGGCCACAGGCTAGTGACTCGGAAAGTGAGGAGCTCCCCAAACCCCGAGT
CAGCGACTCGGAAAGTGAGGACCCTCAGAAAGGACCTGCTAGTGATTCTGAAGCTGAGGATGCC
TCCAGACATAAAGAAAAGCCAGAGTCAGAGGACAGTGATGGGGAGAATAAGAGGGAAGACTCTG
AAGTGCAGAATGAGTCAGACGGCCATGCAGACAGAAAAGGACTCCACAGCTCTGACAGCGAGGA
GGAAGAACCCAAGAGGCAAAAGATTGACAGTGATGACGACGGAGAAAAGGAGGGGGATGAGAAA
GTAGCAAAGCGGAAGGCTGCCGTGCTTTCTGATAGTGAGGACGAAGACAAAGCATCAGCAAAGA
AGAGTCGAGTTATCTCTGATGCTGATGATTCTGATAGTGATGTTGTATCAGACAAATCAGGCAA
AAGAGAGAAGACGGTAGCATCTGATAGTGAAGAAGAAGTCGGGAAAGAAGAGTCTTCTGTAAAG
AAGAGTGAAGAGAAGGATCTGTTTGGGAGTGATAGTGAATCAGGCAATGAAGAAGAAAATCTTA
TTGCAGATATATTTGGAGAATCTGGTGATGAAGAGGAAGAGGAATTTACAGGATTTAACCAAGA
AGATTTGGAGGAAGAGAAAAATGAAACACAGCTAAAAGAAGCAGAAGATTCTGATTCCGACGAT
AACATAAAGAGAGGAAAGCATATGGACTTTCTGTCAGATTTTGAGATGATGTTACAACGAAAAA
AGAGCATGTGTGGCAAACGCAGACGAAATCGAGATGGGGGCACTTTTATTAGTGACGCAGATGA
TGTCGTGAGTGCCATGATTGTCAAGATGAACGAAGCTGCTGAGGAAGACAGGCAATTGAATAAT
CAAAAAAAGCCTGCTCTGAAAAAATTAACCTTATTGCCTACTGTGGTTATGCACCTTAAAAAGC
AGGACCTTAAAGAAACATTTATTGACAGTGGTGTGATGTCTGCCATTAAAGAGTGGCTCTCACC
TCTACCAGATAGGAGTTTGCCTGCACTGAAGATTCGGGAGGAATTGTTAAAGATTCTGCAAGAG
CTACCTAGTGTGAGCCAAGAGACCCTGAAGCACAGTGGGATTGGCCGAGCAGTGATGTATCTGT
ATAAACATCCTAAGGAATCAAGGTCCAACAAGGACATGGCAGGGAAACTAATCAATGAGTGGTC
TCGGCCCATATTTGGTCTTACCTCAAACTATAAAGGAATGACAAGAGAAGAAAGGGAGCAGAGA
GATCTAGAACAAATGCCACAGCGACGAAGAATGAGCAGCACTGGTGGTCAGACACCACGAAGAG
ACCTGGAAAAGGTACTAACAGGAGAGGAAAAGGCTCTTAGACCTGGAGATCCTGGCTTCTGTGC
CCGTGCGAGAGTCCCAATGCCATCAAACAAGGACTATGTTGTCAGGCCCAAGTGGAATGTAGAA
ATGGAGTCATCCAGGTTTCAGGCAACCTCCAAGAAAGGTATCAGTCGGCTGGATAAACAGATGA
GAAAGTTCACAGATATCAGGAAAAAAAGCAGATCTGCACATGCAGTGAAAATCAGCATCGAGGG
CAATAAAATGCCATTGTGACCTTGCCTGGGACGTGTCCCCATCTCTAAAAAAATGCACAGTGGA
CTATCGAGAAAGAAGATGCTTTTAAATGTTTTAGTGTGTCTCTCAATGGTTCCATTTGTATCAT
CTGTTGTTGTAGGACTAACATTTCTCTCTGTTGTATTTAAGACCAGTTGTCTGCTTTGTACAGA
AGAGTACTTACTACTCCTGCTTCTATCAACTGTACGTAATAAAATTTCATTATGGTT

hide sequence

RefSeq Acc Id:

XM_006254574 ⟹ XP_006254636

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	23,969,352 - 24,011,560 (+)	NCBI
mRatBN7.2	18	23,695,496 - 23,737,363 (+)	NCBI
Rnor_6.0	18	24,849,508 - 24,891,339 (+)	NCBI
Rnor_5.0	18	24,564,090 - 24,606,101 (+)	NCBI

Sequence:

show sequence

CCTGCGCACTGCATTTCTCTGAGGGCGGTGGGCAGGCGCCATTTTGGCCCCAGAGGTGCTTCTG
GGAAGTTGAGCGCGGTTCTTCACTTTGCCGGTCGGTGAGGTACGGCCCTGTTTAGTAACTGGGG
TTTCCCGGTCGAAGCGTCGGCGCCCGCCGCTGCCGACTTCTCCAGAGTCTCGGGGGAGGCAGAA
GCGCGCTGCTGTCGAGAGAGGTCACTCCGCCAGGAAGGACGTGACGGGGGCGGCGCGTGGCGCG
GACACTCCCCGCCGAGAGCCCGCCTGCCATGGACTCGGAGTACTACAGCGGTGACCAGTCAGAT
GATGGTGGTGCAACCCCAGTACAGGACGAGCGGGATTCAGGGTCAGATGGTGAGGATGATGTAA
ACGAGCAGCACTCCGGATCCGACACTGGAAGTGTAGACCGCCATTCAGAGAATGAAACTAGTGA
TAGAGAAGATGGCTTGACCAAGATACATAATGGAACAGACTCTGAGAATGATGAGCCCTCCAAT
GTTCATGCCAGTGACTCTGAAAGTGAGGAGCTTCACAGGCCAAAAGACAGTGACTCTGAATCCG
AGGAACATGCAGAGTCTCCTGCCAGTGATTCTGAAAACGAAGCTGTCCACCAGCAGGGGAGTGA
CTCTGAAAAGGAAGAGCTTCTTAATGGGCATGCAAGTGACTCTGAAAAGGAAGAGGGTAGAAAG
CATGCAGCCAGTGACTCTGAAACCGAGGACACTCTGCAGCCTCAGGGCAGCGAGTCTGACAGTG
AAGATCCCCCAAGGCCACAGGCCAGTGATTCAGAAAGCGAGGAGCCTCCCAAACCTCGGATCAG
TGATTCAGAAAGCGAGGAGCTCCCCAAACCTCGGATCAGTGACTCAGAAAGTGAGGATCCTCCA
AGGCCCCAGGTCAGTGACTCAGAAAGTGAGGAGCTCCCCAAACCCCGAGTCAGTGATTCAGAAA
GTGAGGATCCCCCAAGGCCACAGGCTAGTGACTCGGAAAGTGAGGAGCTCCCCAAACCCCGAGT
CAGCGACTCGGAAAGTGAGGACCCTCAGAAAGGACCTGCTAGTGATTCTGAAGCTGAGGATGCC
TCCAGACATAAAGAAAAGCCAGAGTCAGAGGACAGTGATGGGGAGAATAAGAGGGAAGACTCTG
AAGTGCAGAATGAGTCAGACGGCCATGCAGACAGAAAAGGACTCCACAGCTCTGACAGCGAGGA
GGAAGAACCCAAGAGGCAAAAGATTGACAGTGATGACGACGGAGAAAAGGAGGGGGATGAGAAA
GTAGCAAAGCGGAAGGCTGCCGTGCTTTCTGATAGTGAGGACGAAGACAAAGCATCAGCAGCAA
AGAAGAGTCGAGTTATCTCTGATGCTGATGATTCTGATAGTGATGTTGTATCAGACAAATCAGG
CAAAAGAGAGAAGACGGTAGCATCTGATAGTGAAGAAGAAGTCGGGAAAGAAGAGTCTTCTGTA
AAGAAGAGTGAAGAGAAGGATCTGTTTGGGAGTGATAGTGAATCAGGCAATGAAGAAGAAAATC
TTATTGCAGATATATTTGGAGAATCTGGTGATGAAGAGGAAGAGGAATTTACAGGATTTAACCA
AGAAGATTTGGAGGAAGAGAAAAATGAAACACAGCTAAAAGAAGCAGAAGATTCTGATTCCGAC
GATAACATAAAGAGAGGAAAGCATATGGACTTTCTGTCAGATTTTGAGATGATGTTACAACGAA
AAAAGAGCATGTGTGGCAAACGCAGACGAAATCGAGATGGGGGCACTTTTATTAGTGACGCAGA
TGATGTCGTGAGTGCCATGATTGTCAAGATGAACGAAGCTGCTGAGGAAGACAGGCAATTGAAT
AATCAAAAAAAGCCTGCTCTGAAAAAATTAACCTTATTGCCTACTGTGGTTATGCACCTTAAAA
AGCAGGACCTTAAAGAAACATTTATTGACAGTGGTGTGATGTCTGCCATTAAAGAGTGGCTCTC
ACCTCTACCAGATAGGAGTTTGCCTGCACTGAAGATTCGGGAGGAATTGTTAAAGATTCTGCAA
GAGCTACCTAGTGTGAGCCAAGAGACCCTGAAGCACAGTGGGATTGGCCGAGCAGTGATGTATC
TGTATAAACATCCTAAGGAATCAAGGTCCAACAAGGACATGGCAGGGAAACTAATCAATGAGTG
GTCTCGGCCCATATTTGGTCTTACCTCAAACTATAAAGGAATGACAAGAGAAGAAAGGGAGCAG
AGAGATCTAGAACAAATGCCACAGCGACGAAGAATGAGCAGCACTGGTGGTCAGACACCACGAA
GAGACCTGGAAAAGGTACTAACAGGAGAGGAAAAGGCTCTTAGACCTGGAGATCCTGGCTTCTG
TGCCCGTGCGAGAGTCCCAATGCCATCAAACAAGGACTATGTTGTCAGGCCCAAGTGGAATGTA
GAAATGGAGTCATCCAGGATCAAGATGTGAGCCCTCAGCTGCTGCTCCTGTTTGCCACCTGCTA
CCTTTACTCTGCCACTGTGGACTCCAACCCTCTGGAGCCGTAAGCCCAAAATAAACTCTTGGCC
TTTATCACACTGATAAAAAAGTAATACTTAATCAGTTAACAATAAGGATTTCTTGTGATATAGA
ACAGGGACACCTGTCATTTGAGTTTGCAGGAAGCATGATTTCTAATTCTCTTTGGGGCACATTT
CATAAGTAGTAAGAAGGGTTTTGACTAGAAATAATGTGGAATTAGAGTTTTTTCAGAAAAGTTT
TATATTAAGACCATCAGAGGCTAGTGGGTCAGTAAGCACTGGTCCTTTGGATGTTATCCAGTGT
ACACAACTATGCTAAGAACATAAAACAGCATATGCAACTATGCTAAGACTTTTTTGAAAGCCAA
GTCAGAGAAGAAGCAAGGTCAGAAGAGTGAGTTCCTGGATGTCTTAGAACATACTGTATGGACT
AGGCTGGCCTCAAACGCAGATCCTCCTTCTGCCTCCTGAGTGCTAGAATTAAAGGCATGTACCA
CAGCACCCAGTGTGACTGGCTGACAGTTCTTATTTGAAAACATTTCTTATAAGACCTATAGCAT
GCACCCCCAGCTCTACAAATCCCTAAGTTTGATTCCCTAGCACTGTATAAAACAGGTGTAGTTA
AGTTTGTTTTAAGCTAGTCATGGTGGCATATACCAATTCCAGCACTCCGGAAGCAGAGACAAGT
GGACCTCTGTGATTTCAAGGCCAGCCTGGTCTGCAAAGTGAGTCCAGAACAACCAGGGCTATAC
AGAGAAACCCTGTCACAGGGCAAGGGTGTGGGTTTGGGGGCAGTCTGTTTTAGCACTGTTTTAG
TCTGTTTAGACTGGCAGTAGTGGTACATGCTTTTAATCCCAGTACTAGCGAGGCAGAGGCAGGC
AGATGCCTGAATTCTAGGCCAGTTCCAAGACAGCCAGGGCTAAACAGAGAAACCCTGCCATGAA
AAACCAAAAAAGTTTATTTTATGTTATGGACTTCCTAAAGCTGCAGATACGGCTGTGTGAGAAT
GCTCTGTTCATCAAGGTATGCTTAGCCTTGGATGGGGAACAGTAGGGTGAAGCCTGAGATAGAG
TTAGCTAAAAAAAACTAGGACAAAATGAAGTCATTTGGGCAGTTCCCATTTAGCCTAGCAGTTT
TTATAACAAATTAAAGTTAGCAAAAGAATGTGTGCAAGTTCATATAAGTAATAAAAACATTTAA
ACTGTCA

hide sequence

RefSeq Acc Id:

XM_017600919 ⟹ XP_017456408

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	23,969,352 - 24,010,260 (+)	NCBI
mRatBN7.2	18	23,695,496 - 23,736,020 (+)	NCBI
Rnor_6.0	18	24,849,508 - 24,889,045 (+)	NCBI

Sequence:

show sequence

CCTGCGCACTGCATTTCTCTGAGGGCGGTGGGCAGGCGCCATTTTGGCCCCAGAGGTGCTTCTG
GGAAGTTGAGCGCGGTTCTTCACTTTGCCGGTCGGTGAGGTACGGCCCTGTTTAGTAACTGGGG
TTTCCCGGTCGAAGCGTCGGCGCCCGCCGCTGCCGACTTCTCCAGAGTCTCGGGGGAGGCAGAA
GCGCGCTGCTGTCGAGAGAGGTCACTCCGCCAGGAAGGACGTGACGGGGGCGGCGCGTGGCGCG
GACACTCCCCGCCGAGAGCCCGCCTGCCATGGACTCGGAGTACTACAGCGGTGACCAGTCAGAT
GATGGTGGTGCAACCCCAGTACAGGACGAGCGGGATTCAGGGTCAGATGGTGAGGATGATGTAA
ACGAGCAGCACTCCGGATCCGACACTGGAAGTGTAGACCGCCATTCAGAGAATGAAACTAGTGA
TAGAGAAGATGGCTTGACCAAGATACATAATGGAACAGACTCTGAGAATGATGAGCCCTCCAAT
GTTCATGCCAGTGACTCTGAAAGTGAGGAGCTTCACAGGCCAAAAGACAGTGACTCTGAATCCG
AGGAACATGCAGAGTCTCCTGCCAGTGATTCTGAAAACGAAGCTGTCCACCAGCAGGGGAGTGA
CTCTGAAAAGGAAGAGCTTCTTAATGGGCATGCAAGTGACTCTGAAAAGGAAGAGGGTAGAAAG
CATGCAGCCAGTGACTCTGAAACCGAGGACACTCTGCAGCCTCAGGGCAGCGAGTCTGACAGTG
AAGATCCCCCAAGGCCACAGGCCAGTGATTCAGAAAGCGAGGAGCCTCCCAAACCTCGGATCAG
TGATTCAGAAAGCGAGGAGCTCCCCAAACCTCGGATCAGTGACTCAGAAAGTGAGGATCCTCCA
AGGCCCCAGGTCAGTGACTCAGAAAGTGAGGAGCTCCCCAAACCCCGAGTCAGTGATTCAGAAA
GTGAGGATCCCCCAAGGCCACAGGCTAGTGACTCGGAAAGTGAGGAGCTCCCCAAACCCCGAGT
CAGCGACTCGGAAAGTGAGGACCCTCAGAAAGGACCTGCTAGTGATTCTGAAGCTGAGGATGCC
TCCAGACATAAAGAAAAGCCAGAGTCAGAGGACAGTGATGGGGAGAATAAGAGGGAAGACTCTG
AAGTGCAGAATGAGTCAGACGGCCATGCAGACAGAAAAGGACTCCACAGCTCTGACAGCGAGGA
GGAAGAACCCAAGAGGCAAAAGATTGACAGTGATGACGACGGAGAAAAGGAGGGGGATGAGAAA
GTAGCAAAGCGGAAGGCTGCCGTGCTTTCTGATAGTGAGGACGAAGACAAAGCATCAGCAGCAA
AGAAGAGTCGAGTTATCTCTGATGCTGATGATTCTGATAGTGATGTTGTATCAGACAAATCAGG
CAAAAGAGAGAAGACGGTAGCATCTGATAGTGAAGAAGAAGTCGGGAAAGAAGAGTCTTCTGTA
AAGAAGAGTGAAGAGAAGGATCTGTTTGGGAGTGATAGTGAATCAGGCAATGAAGAAGAAAATC
TTATTGCAGATATATTTGGAGAATCTGGTGATGAAGAGGAAGAGGAATTTACAGGATTTAACCA
AGAAGATTTGGAGGAAGAGAAAAATGAAACACAGCTAAAAGAAGCAGAAGATTCTGATTCCGAC
GATAACATAAAGAGAGGAAAGCATATGGACTTTCTGTCAGATTTTGAGATGATGTTACAACGAA
AAAAGAGCATGTGTGGCAAACGCAGACGAAATCGAGATGGGGGCACTTTTATTAGTGACGCAGA
TGATGTCGTGAGTGCCATGATTGTCAAGATGAACGAAGCTGCTGAGGAAGACAGGCAATTGAAT
AATCAAAAAAAGCCTGCTCTGAAAAAATTAACCTTATTGCCTACTGTGGTTATGCACCTTAAAA
AGCAGGACCTTAAAGAAACATTTATTGACAGTGGTGTGATGTCTGCCATTAAAGAGTGGCTCTC
ACCTCTACCAGATAGGAGTTTGCCTGCACTGAAGATTCGGGAGGAATTGTTAAAGATTCTGCAA
GAGCTACCTAGTGTGAGCCAAGAGACCCTGAAGCACAGTGGGATTGGCCGAGCAGTGATGTATC
TGTATAAACATCCTAAGGAATCAAGGTCCAACAAGGACATGGCAGGGAAACTAATCAATGAGTG
GTCTCGGCCCATATTTGGTCTTACCTCAAACTATAAAGGAATGACAAGAGAAGAAAGGGAGCAG
AGAGATCTAGAACAAATGCCACAGCGACGAAGAATGAGCAGCACTGGTGGTCAGACACCACGAA
GAGACCTGGAAAAGGTACTAACAGGAGAGGAAAAGGCTCTTAGACCTGGAGATCCTGGCTTCTG
TGCCCGTGCGAGAGTCCCAATGCCATCAAACAAGGACTATGTTGTCAGGCCCAAGTGGAATGTA
GAAATGGAGTCATCCAGGGAGCTTCCCTGGGAGATGGAATGTGTCAATCTCAGAGGAAACTAAG
ACACTATACCCATTAAGTCTGGGGCGCTTAAATACTTGGTCTGCAGTTGGTGGCTGTTAGTAGA
AGATTAAGGATTGTGACCTTGCTGGGACTATATTACTGGAGGTGGACTTTGAGATTTCAAAAGA
CTCAGCCATTTAGAGTTACCACCGTTTGTTTCCTGCTTGTGGTTCAAGATGTGAGCTCTCAGCT
GCTGCTCCTGTTTGCCACCTTTTATCTTCACTATGCCATCATGGACTCCAACCCTCTGAAACCG
TAAGCCCCAGATAAACCAACCTGTAAGTTGCTTTGGTTATGGTGTCTCATCACAATAGAAAAGT
AAGTAATAGAGAAATTGCTACTACGACTGGGTCATTAGCTGTGACAGACCTGACCATATGTTTG
GGGGAACAATGTGTAAGGCTTCGGAACCATGAAATAAAAAAGCTGTTGAATGCTGAAAGCAGAG
TTTAATGGGCCAGTCTAATAGGAGCTTGCAAGACTGCTAAGAGCAGCATGAGCTATGGAGGCCC
AGTTCAGAGTTTTCAGAGGGAAACAACATAAGCAAACACCCTGGAGACCGTTGTTAAAATGTTT
GGCAGAGAATATGGTGGCTTTCTGCCCTCTTCTTAAGAACTTGCCTGAGGTTACCAACTTCTTT
GGCAGAGGAGATTTCAAGCCAGCCTAATACTAACTCTGTTGTGTAGTTATTAAGAATTACTCAT
TTTATTTTTGCAGATCTTCAATGAAGAAAAGCAAATAAGGCAGAAAGAAATACAAAATGTAGAG
TTTGGACAGGAAAAGGACACTGGCAAGG

hide sequence

RefSeq Acc Id:

XM_063277254 ⟹ XP_063133324

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	23,969,352 - 24,000,237 (+)	NCBI

RefSeq Acc Id:

XR_005496012

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	23,969,352 - 24,011,560 (+)	NCBI
mRatBN7.2	18	23,695,496 - 23,737,363 (+)	NCBI

RefSeq Acc Id:

XR_005496013

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	23,969,352 - 24,011,560 (+)	NCBI
mRatBN7.2	18	23,695,496 - 23,737,363 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001030090	(Get FASTA)	NCBI Sequence Viewer
	NP_001385564	(Get FASTA)	NCBI Sequence Viewer
	XP_006254634	(Get FASTA)	NCBI Sequence Viewer
	XP_006254635	(Get FASTA)	NCBI Sequence Viewer
	XP_006254636	(Get FASTA)	NCBI Sequence Viewer
	XP_017456408	(Get FASTA)	NCBI Sequence Viewer
	XP_063133324	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI04701	(Get FASTA)	NCBI Sequence Viewer
	EDL76182	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000057730
	ENSRNOP00000057730.2
	ENSRNOP00000069847
	ENSRNOP00000085053
	ENSRNOP00000091736
GenBank Protein	Q3SWT4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001030090 ⟸ NM_001034918
- Peptide Label:	isoform 1
- UniProtKB:	Q3SWT4 (UniProtKB/Swiss-Prot), A0A0G2JWE3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDSEYYSGDQSDDGGATPVQDERDSGSDGEDDVNEQHSGSDTGSVDRHSENETSDREDGLTKIH NGTDSENDEPSNVHASDSESEELHRPKDSDSESEEHAESPASDSENEAVHQQGSDSEKEELLNG HASDSEKEEGRKHAASDSETEDTLQPQGSESDSEDPPRPQASDSESEEPPKPRISDSESEELPK PRISDSESEDPPRPQVSDSESEELPKPRVSDSESEDPPRPQASDSESEELPKPRVSDSESEDPQ KGPASDSEAEDASRHKEKPESEDSDGENKREDSEVQNESDGHADRKGLHSSDSEEEEPKRQKID SDDDGEKEGDEKVAKRKAAVLSDSEDEDKASAAKKSRVISDADDSDSDVVSDKSGKREKTVASD SEEEVGKEESSVKKSEEKDLFGSDSESGNEEENLIADIFGESGDEEEEEFTGFNQEDLEEEKNE TQLKEAEDSDSDDNIKRGKHMDFLSDFEMMLQRKKSMCGKRRRNRDGGTFISDADDVVSAMIVK MNEAAEEDRQLNNQKKPALKKLTLLPTVVMHLKKQDLKETFIDSGVMSAIKEWLSPLPDRSLPA LKIREELLKILQELPSVSQETLKHSGIGRAVMYLYKHPKESRSNKDMAGKLINEWSRPIFGLTS NYKGMTREEREQRDLEQMPQRRRMSSTGGQTPRRDLEKVLTGEEKALRPGDPGFCARARVPMPS NKDYVVRPKWNVEMESSRPGILKKGLSRLEKHKRRFAEQKRLSQMHRAVKFSIEGNRMPL hide sequence

RefSeq Acc Id:	XP_006254634 ⟸ XM_006254572
- Peptide Label:	isoform X2
- UniProtKB:	Q3SWT4 (UniProtKB/Swiss-Prot), A0A0G2JWE3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDSEYYSGDQSDDGGATPVQDERDSGSDGEDDVNEQHSGSDTGSVDRHSENETSDREDGLTKIH NGTDSENDEPSNVHASDSESEELHRPKDSDSESEEHAESPASDSENEAVHQQGSDSEKEELLNG HASDSEKEEGRKHAASDSETEDTLQPQGSESDSEDPPRPQASDSESEEPPKPRISDSESEELPK PRISDSESEDPPRPQVSDSESEELPKPRVSDSESEDPPRPQASDSESEELPKPRVSDSESEDPQ KGPASDSEAEDASRHKEKPESEDSDGENKREDSEVQNESDGHADRKGLHSSDSEEEEPKRQKID SDDDGEKEGDEKVAKRKAAVLSDSEDEDKASAAKKSRVISDADDSDSDVVSDKSGKREKTVASD SEEEVGKEESSVKKSEEKDLFGSDSESGNEEENLIADIFGESGDEEEEEFTGFNQEDLEEEKNE TQLKEAEDSDSDDNIKRGKHMDFLSDFEMMLQRKKSMCGKRRRNRDGGTFISDADDVVSAMIVK MNEAAEEDRQLNNQKKPALKKLTLLPTVVMHLKKQDLKETFIDSGVMSAIKEWLSPLPDRSLPA LKIREELLKILQELPSVSQETLKHSGIGRAVMYLYKHPKESRSNKDMAGKLINEWSRPIFGLTS NYKGMTREEREQRDLEQMPQRRRMSSTGGQTPRRDLEKVLTGEEKALRPGDPGFCARARVPMPS NKDYVVRPKWNVEMESSRPGILKKGLSRLEKHKRRFAEQKRLSQMHRAVKFSIEGNRMPL hide sequence

RefSeq Acc Id:	XP_006254636 ⟸ XM_006254574
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6AF19 (UniProtKB/TrEMBL), A0A8I6A2E0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDSEYYSGDQSDDGGATPVQDERDSGSDGEDDVNEQHSGSDTGSVDRHSENETSDREDGLTKIH NGTDSENDEPSNVHASDSESEELHRPKDSDSESEEHAESPASDSENEAVHQQGSDSEKEELLNG HASDSEKEEGRKHAASDSETEDTLQPQGSESDSEDPPRPQASDSESEEPPKPRISDSESEELPK PRISDSESEDPPRPQVSDSESEELPKPRVSDSESEDPPRPQASDSESEELPKPRVSDSESEDPQ KGPASDSEAEDASRHKEKPESEDSDGENKREDSEVQNESDGHADRKGLHSSDSEEEEPKRQKID SDDDGEKEGDEKVAKRKAAVLSDSEDEDKASAAKKSRVISDADDSDSDVVSDKSGKREKTVASD SEEEVGKEESSVKKSEEKDLFGSDSESGNEEENLIADIFGESGDEEEEEFTGFNQEDLEEEKNE TQLKEAEDSDSDDNIKRGKHMDFLSDFEMMLQRKKSMCGKRRRNRDGGTFISDADDVVSAMIVK MNEAAEEDRQLNNQKKPALKKLTLLPTVVMHLKKQDLKETFIDSGVMSAIKEWLSPLPDRSLPA LKIREELLKILQELPSVSQETLKHSGIGRAVMYLYKHPKESRSNKDMAGKLINEWSRPIFGLTS NYKGMTREEREQRDLEQMPQRRRMSSTGGQTPRRDLEKVLTGEEKALRPGDPGFCARARVPMPS NKDYVVRPKWNVEMESSRIKM hide sequence

RefSeq Acc Id:	XP_006254635 ⟸ XM_006254573
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JWE3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDSEYYSGDQSDDGGATPVQDERDSGSDGEDDVNEQHSGSDTGSVDRHSENETSDREDGLTKIH NGTDSENDEPSNVHASDSESEELHRPKDSDSESEEHAESPASDSENEAVHQQGSDSEKEELLNG HASDSEKEEGRKHAASDSETEDTLQPQGSESDSEDPPRPQASDSESEEPPKPRISDSESEELPK PRISDSESEDPPRPQVSDSESEELPKPRVSDSESEDPPRPQASDSESEELPKPRVSDSESEDPQ KGPASDSEAEDASRHKEKPESEDSDGENKREDSEVQNESDGHADRKGLHSSDSEEEEPKRQKID SDDDGEKEGDEKVAKRKAAVLSDSEDEDKASAKKSRVISDADDSDSDVVSDKSGKREKTVASDS EEEVGKEESSVKKSEEKDLFGSDSESGNEEENLIADIFGESGDEEEEEFTGFNQEDLEEEKNET QLKEAEDSDSDDNIKRGKHMDFLSDFEMMLQRKKSMCGKRRRNRDGGTFISDADDVVSAMIVKM NEAAEEDRQLNNQKKPALKKLTLLPTVVMHLKKQDLKETFIDSGVMSAIKEWLSPLPDRSLPAL KIREELLKILQELPSVSQETLKHSGIGRAVMYLYKHPKESRSNKDMAGKLINEWSRPIFGLTSN YKGMTREEREQRDLEQMPQRRRMSSTGGQTPRRDLEKVLTGEEKALRPGDPGFCARARVPMPSN KDYVVRPKWNVEMESSRFQATSKKGISRLDKQMRKFTDIRKKSRSAHAVKISIEGNKMPL hide sequence

RefSeq Acc Id:	XP_017456408 ⟸ XM_017600919
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6AB64 (UniProtKB/TrEMBL), A0A8I6A2E0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDSEYYSGDQSDDGGATPVQDERDSGSDGEDDVNEQHSGSDTGSVDRHSENETSDREDGLTKIH NGTDSENDEPSNVHASDSESEELHRPKDSDSESEEHAESPASDSENEAVHQQGSDSEKEELLNG HASDSEKEEGRKHAASDSETEDTLQPQGSESDSEDPPRPQASDSESEEPPKPRISDSESEELPK PRISDSESEDPPRPQVSDSESEELPKPRVSDSESEDPPRPQASDSESEELPKPRVSDSESEDPQ KGPASDSEAEDASRHKEKPESEDSDGENKREDSEVQNESDGHADRKGLHSSDSEEEEPKRQKID SDDDGEKEGDEKVAKRKAAVLSDSEDEDKASAAKKSRVISDADDSDSDVVSDKSGKREKTVASD SEEEVGKEESSVKKSEEKDLFGSDSESGNEEENLIADIFGESGDEEEEEFTGFNQEDLEEEKNE TQLKEAEDSDSDDNIKRGKHMDFLSDFEMMLQRKKSMCGKRRRNRDGGTFISDADDVVSAMIVK MNEAAEEDRQLNNQKKPALKKLTLLPTVVMHLKKQDLKETFIDSGVMSAIKEWLSPLPDRSLPA LKIREELLKILQELPSVSQETLKHSGIGRAVMYLYKHPKESRSNKDMAGKLINEWSRPIFGLTS NYKGMTREEREQRDLEQMPQRRRMSSTGGQTPRRDLEKVLTGEEKALRPGDPGFCARARVPMPS NKDYVVRPKWNVEMESSRELPWEMECVNLRGN hide sequence

Ensembl Acc Id:

ENSRNOP00000057730 ⟸ ENSRNOT00000061011

Ensembl Acc Id:

ENSRNOP00000069847 ⟸ ENSRNOT00000085516

Ensembl Acc Id:

ENSRNOP00000095799 ⟸ ENSRNOT00000114318

Ensembl Acc Id:

ENSRNOP00000085053 ⟸ ENSRNOT00000102322

Ensembl Acc Id:

ENSRNOP00000091736 ⟸ ENSRNOT00000112252

Ensembl Acc Id:

ENSRNOP00000090115 ⟸ ENSRNOT00000095752

RefSeq Acc Id:	NP_001385564 ⟸ NM_001398635
- Peptide Label:	isoform 2
- UniProtKB:	A0A0G2JWE3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133324 ⟸ XM_063277254
- Peptide Label:	isoform X3
- UniProtKB:	A0A0G2JWE3 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000102505 ⟸ ENSRNOT00000158424

Protein Domains

TFIIS N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q3SWT4-F1-model_v2	AlphaFold	Q3SWT4	1-764	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700686

Promoter ID:

EPDNEW_R11205

Type:

initiation region

Name:

Iws1_1

Description:

IWS1, SUPT6H interacting protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	18	24,849,554 - 24,849,614	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1304762	AgrOrtholog
BioCyc Gene	G2FUF-8044	BioCyc
Ensembl Genes	ENSRNOG00000014630	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000061011	ENTREZGENE
	ENSRNOT00000061011.4	UniProtKB/Swiss-Prot
	ENSRNOT00000085516	ENTREZGENE
	ENSRNOT00000102322	ENTREZGENE
	ENSRNOT00000112252	ENTREZGENE
Gene3D-CATH	1.20.930.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7190021	IMAGE-MGC_LOAD
InterPro	RNAPII_TF_IWS1	UniProtKB/Swiss-Prot
	TFIIS/LEDGF_dom_sf	UniProtKB/Swiss-Prot
	TFIIS_N	UniProtKB/Swiss-Prot
KEGG Report	rno:291705	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:124986	IMAGE-MGC_LOAD
NCBI Gene	291705	ENTREZGENE
PANTHER	PROTEIN IWS1 HOMOLOG	UniProtKB/Swiss-Prot
	PROTEIN IWS1 HOMOLOG	UniProtKB/Swiss-Prot
Pfam	Med26	UniProtKB/Swiss-Prot
PhenoGen	Iws1	PhenoGen
PROSITE	TFIIS_N	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000014630	RatGTEx
Superfamily-SCOP	SSF47676	UniProtKB/Swiss-Prot
UniProt	A0A0G2JWE3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A2E0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AB64	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AF19	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AQ12_RAT	UniProtKB/TrEMBL
	A0ABK0L1U2_RAT	UniProtKB/TrEMBL
	IWS1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-04-10	Iws1	interacts with SUPT6H, CTD assembly factor 1	Iws1	IWS1, SUPT6H interacting protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-01-13	Iws1	IWS1, SUPT6H interacting protein	Iws1	IWS1 homolog (S. cerevisiae)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-06-15	Iws1	IWS1 homolog (S. cerevisiae)	RGD1304762	similar to hypothetical protein FLJ10006	Symbol and Name updated to reflect Human and Mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1304762	similar to hypothetical protein FLJ10006	RGD1304762_predicted	similar to hypothetical protein FLJ10006 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1304762_predicted	similar to hypothetical protein FLJ10006 (predicted)	LOC291705_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC291705_predicted	similar to hypothetical protein FLJ10006 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message