Ebpl (EBP like) - Rat Genome Database

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Gene: Ebpl (EBP like) Rattus norvegicus
Analyze
Symbol: Ebpl
Name: EBP like
RGD ID: 1304571
Description: Predicted to enable cholestenol delta-isomerase activity. Predicted to be involved in sterol metabolic process. Predicted to be located in membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human EBPL (EBP like); INTERACTS WITH 1,3-dinitrobenzene; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: emopamil binding protein-like; emopamil-binding protein-like; LOC361054
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81539,684,140 - 39,707,537 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1539,684,140 - 39,707,537 (-)EnsemblGRCr8
mRatBN7.21535,508,074 - 35,531,472 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1535,508,074 - 35,531,472 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1537,372,859 - 37,396,078 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01538,523,505 - 38,546,724 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01536,968,764 - 36,992,161 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01541,668,119 - 41,691,518 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1541,668,119 - 41,691,518 (-)Ensemblrn6Rnor6.0
Rnor_5.01545,472,241 - 45,495,631 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41540,484,464 - 40,506,451 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1535,205,464 - 35,228,861 (-)NCBICelera
RGSC_v3.11540,500,163 - 40,522,151 (-)NCBI
Cytogenetic Map15p12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Ebpl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81539,684,140 - 39,707,537 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1539,684,140 - 39,707,537 (-)EnsemblGRCr8
mRatBN7.21535,508,074 - 35,531,472 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1535,508,074 - 35,531,472 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1537,372,859 - 37,396,078 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01538,523,505 - 38,546,724 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01536,968,764 - 36,992,161 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01541,668,119 - 41,691,518 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1541,668,119 - 41,691,518 (-)Ensemblrn6Rnor6.0
Rnor_5.01545,472,241 - 45,495,631 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41540,484,464 - 40,506,451 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1535,205,464 - 35,228,861 (-)NCBICelera
RGSC_v3.11540,500,163 - 40,522,151 (-)NCBI
Cytogenetic Map15p12NCBI
EBPL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381349,660,674 - 49,691,487 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1349,660,674 - 49,691,500 (-)Ensemblhg38GRCh38
GRCh371350,234,810 - 50,265,623 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361349,132,863 - 49,163,612 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341349,132,863 - 49,163,612NCBI
Celera1331,289,746 - 31,320,576 (-)NCBICelera
Cytogenetic Map13q14.2NCBI
HuRef1331,028,176 - 31,058,957 (-)NCBIHuRef
CHM1_11350,202,353 - 50,233,179 (-)NCBICHM1_1
T2T-CHM13v2.01348,879,582 - 48,910,398 (-)NCBIT2T-CHM13v2.0
Ebpl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391461,577,212 - 61,597,894 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1461,569,191 - 61,597,888 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381461,339,763 - 61,360,445 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1461,331,742 - 61,360,439 (-)Ensemblmm10GRCm38
MGSCv371461,958,600 - 61,979,282 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361460,294,860 - 60,314,549 (-)NCBIMGSCv36mm8
Celera1459,106,822 - 59,127,515 (-)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1432.72NCBI
Ebpl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554313,112,134 - 3,121,780 (-)Ensembl
ChiLan1.0NW_0049554313,114,160 - 3,122,448 (-)NCBIChiLan1.0ChiLan1.0
EBPL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21451,074,227 - 51,130,358 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11349,751,192 - 49,782,032 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01330,799,832 - 30,830,670 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11349,548,230 - 49,578,820 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1349,548,230 - 49,578,820 (-)EnsemblpanPan2panpan1.1
EBPL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1222,116,588 - 2,137,935 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl222,116,131 - 2,182,633 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha222,145,655 - 2,166,752 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0222,106,939 - 2,128,685 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl222,106,435 - 2,173,674 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1222,016,192 - 2,037,355 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0222,065,607 - 2,086,720 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0222,083,831 - 2,104,999 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ebpl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945159,222,363 - 159,247,403 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365652,706,788 - 2,731,453 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365652,706,788 - 2,731,453 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EBPL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1118,040,011 - 18,072,633 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11118,039,978 - 18,150,729 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21118,297,518 - 18,444,593 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EBPL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1327,576,087 - 27,606,770 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl327,576,329 - 27,606,684 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605716,276,627 - 16,307,505 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ebpl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247484,967,698 - 5,000,728 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247484,967,611 - 5,000,156 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ebpl
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11263,053,878 - 63,077,209 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ebpl
111 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:76
Count of miRNA genes:63
Interacting mature miRNAs:73
Transcripts:ENSRNOT00000020036
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15231575947315759Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15144836456Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)153185580392671517Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152852773273527732Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152272835342072050Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1525285835104695021Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)152233635152597086Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1525285835104695021Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151915576287086765Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)15278592347785923Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151492659471614418Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)152233635167336351Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1525285835104695021Rat

Markers in Region
RH140306  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21535,508,324 - 35,508,507 (+)MAPPERmRatBN7.2
Rnor_6.01541,668,370 - 41,668,552NCBIRnor6.0
Rnor_5.01545,472,492 - 45,472,674UniSTSRnor5.0
RGSC_v3.41540,484,715 - 40,484,897UniSTSRGSC3.4
Celera1535,205,715 - 35,205,897UniSTS
RH 3.4 Map15230.5UniSTS
Cytogenetic Map15p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 91 59 6 355 191 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000020036   ⟹   ENSRNOP00000020036
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1539,684,140 - 39,707,537 (-)Ensembl
mRatBN7.2 Ensembl1535,508,074 - 35,531,472 (-)Ensembl
Rnor_6.0 Ensembl1541,668,119 - 41,691,518 (-)Ensembl
RefSeq Acc Id: NM_001108381   ⟹   NP_001101851
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81539,684,140 - 39,707,537 (-)NCBI
mRatBN7.21535,508,074 - 35,531,472 (-)NCBI
Rnor_6.01541,668,119 - 41,691,518 (-)NCBI
Rnor_5.01545,472,241 - 45,495,631 (-)NCBI
RGSC_v3.41540,484,464 - 40,506,451 (-)RGD
Celera1535,205,464 - 35,228,861 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001101851 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL85277 (Get FASTA)   NCBI Sequence Viewer  
  EDL85278 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000020036
  ENSRNOP00000020036.3
RefSeq Acc Id: NP_001101851   ⟸   NM_001108381
- UniProtKB: D3ZXC8 (UniProtKB/TrEMBL),   A6K6B7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000020036   ⟸   ENSRNOT00000020036
Protein Domains
EXPERA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZXC8-F1-model_v2 AlphaFold D3ZXC8 1-206 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699744
Promoter ID:EPDNEW_R10266
Type:initiation region
Name:Ebpl_1
Description:emopamil binding protein-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01541,691,541 - 41,691,601EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304571 AgrOrtholog
BioCyc Gene G2FUF-13505 BioCyc
Ensembl Genes ENSRNOG00000014659 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000020036 ENTREZGENE
  ENSRNOT00000020036.8 UniProtKB/TrEMBL
InterPro EBP UniProtKB/TrEMBL
  EXPERA UniProtKB/TrEMBL
KEGG Report rno:361054 UniProtKB/TrEMBL
NCBI Gene 361054 ENTREZGENE
PANTHER EBP UniProtKB/TrEMBL
  EMOPAMIL-BINDING PROTEIN-LIKE UniProtKB/TrEMBL
Pfam EBP UniProtKB/TrEMBL
PhenoGen Ebpl PhenoGen
PROSITE EXPERA UniProtKB/TrEMBL
  PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000014659 RatGTEx
UniProt A6K6B7 ENTREZGENE, UniProtKB/TrEMBL
  D3ZXC8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-18 Ebpl  EBP like  Ebpl  emopamil binding protein-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Ebpl  emopamil binding protein-like   Ebpl_predicted  emopamil binding protein-like (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Ebpl_predicted  emopamil binding protein-like (predicted)      Symbol and Name status set to approved 70820 APPROVED