Ufc1 (ubiquitin-fold modifier conjugating enzyme 1) - Rat Genome Database

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Gene: Ufc1 (ubiquitin-fold modifier conjugating enzyme 1) Rattus norvegicus
Analyze
Symbol: Ufc1
Name: ubiquitin-fold modifier conjugating enzyme 1
RGD ID: 1303313
Description: Predicted to enable UFM1 conjugating enzyme activity. Predicted to be involved in several processes, including protein K69-linked ufmylation; regulation of type II interferon production; and reticulophagy. Human ortholog(s) of this gene implicated in neurodevelopmental disorder with spasticity and poor growth. Orthologous to human UFC1 (ubiquitin-fold modifier conjugating enzyme 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MGC105791; ubiquitin-fold modifier-conjugating enzyme 1; ufc1-s; Ufm1-conjugating enzyme 1; Ufm1-conjugating enzyme 1-
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81386,241,779 - 86,280,513 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1386,241,779 - 86,248,522 (-)EnsemblGRCr8
mRatBN7.21383,709,329 - 83,719,762 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1383,709,330 - 83,716,076 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1386,215,100 - 86,221,811 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01387,613,307 - 87,620,018 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01384,844,753 - 84,851,449 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01389,661,763 - 89,668,513 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1389,661,763 - 89,668,473 (-)Ensemblrn6Rnor6.0
Rnor_5.01394,288,629 - 94,299,195 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41387,181,637 - 87,188,347 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1383,340,017 - 83,346,728 (-)NCBICelera
RGSC_v3.11387,370,520 - 87,377,231 (-)NCBI
Cytogenetic Map13q24NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15071506   PMID:15489334   PMID:19056867   PMID:23152784   PMID:23376485   PMID:25219498   PMID:29868776  


Genomics

Comparative Map Data
Ufc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81386,241,779 - 86,280,513 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1386,241,779 - 86,248,522 (-)EnsemblGRCr8
mRatBN7.21383,709,329 - 83,719,762 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1383,709,330 - 83,716,076 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1386,215,100 - 86,221,811 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01387,613,307 - 87,620,018 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01384,844,753 - 84,851,449 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01389,661,763 - 89,668,513 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1389,661,763 - 89,668,473 (-)Ensemblrn6Rnor6.0
Rnor_5.01394,288,629 - 94,299,195 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41387,181,637 - 87,188,347 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1383,340,017 - 83,346,728 (-)NCBICelera
RGSC_v3.11387,370,520 - 87,377,231 (-)NCBI
Cytogenetic Map13q24NCBI
UFC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381161,153,978 - 161,158,856 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1161,152,776 - 161,158,856 (+)Ensemblhg38GRCh38
GRCh371161,123,768 - 161,128,646 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361159,390,158 - 159,395,270 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1134,190,687 - 134,195,799 (+)NCBICelera
Cytogenetic Map1q23.3NCBI
HuRef1132,480,476 - 132,485,588 (+)NCBIHuRef
CHM1_11162,519,784 - 162,524,896 (+)NCBICHM1_1
T2T-CHM13v2.01160,270,029 - 160,296,313 (+)NCBIT2T-CHM13v2.0
Ufc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391171,116,137 - 171,122,575 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1171,116,136 - 171,122,597 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381171,288,564 - 171,295,002 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1171,288,563 - 171,295,024 (-)Ensemblmm10GRCm38
MGSCv371173,218,695 - 173,225,113 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361173,125,239 - 173,131,657 (-)NCBIMGSCv36mm8
Celera1173,744,594 - 173,750,974 (-)NCBICelera
Cytogenetic Map1H3NCBI
cM Map179.31NCBI
Ufc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546812,919,031 - 12,922,740 (+)Ensembl
ChiLan1.0NW_00495546812,919,031 - 12,922,740 (+)NCBIChiLan1.0ChiLan1.0
UFC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2188,693,114 - 88,719,355 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1188,383,435 - 88,409,693 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01136,545,095 - 136,571,327 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11140,479,007 - 140,484,143 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1140,479,007 - 140,484,143 (+)EnsemblpanPan2panpan1.1
UFC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13821,319,039 - 21,339,524 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3821,319,054 - 21,340,211 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3821,393,379 - 21,398,184 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03821,436,665 - 21,441,469 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3821,436,671 - 21,457,738 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13821,324,603 - 21,329,405 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03821,739,010 - 21,743,860 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03822,148,081 - 22,152,883 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ufc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050587,239,884 - 7,254,069 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936903449,039 - 462,727 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936903449,042 - 462,727 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UFC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl489,296,282 - 89,302,941 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1489,296,281 - 89,311,331 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2497,153,009 - 97,168,042 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UFC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1202,826,909 - 2,848,210 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660381,874,000 - 1,895,709 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ufc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624794223,730 - 243,199 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624794223,730 - 243,519 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Ufc1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11050,453,397 - 50,460,037 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ufc1
287 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:186
Count of miRNA genes:138
Interacting mature miRNAs:149
Transcripts:ENSRNOT00000004938
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134863963493639634Rat
10755495Bp387Blood pressure QTL 3873.78arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133721624190057603Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1338975045103588154Rat
8655951Rf63Renal function QTL 6312.2blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)1371610804109350286Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1383286150109350286Rat
8655945Rf61Renal function QTL 613.6blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)137161080489333251Rat
71119Thym2Thymus enlargement QTL 23.8thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)134874981487285480Rat
1331783Bp221Blood pressure QTL 2213.72886arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)137161080489333251Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137298450699745408Rat
1300166Kidm6Kidney mass QTL 63.93kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)137161080489333251Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1367635937109350286Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13742179187286911Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
724564Uae11Urinary albumin excretion QTL 115.7urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)134735425894285672Rat
738027Lnnr6Liver neoplastic nodule remodeling QTL 63.3liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)1365613454109350286Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
7387280Uae43Urinary albumin excretion QTL 435.690.4174urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1368983334109350286Rat
738026Lnnr5Liver neoplastic nodule remodeling QTL 53.29liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)136242459288113509Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1367635937109350286Rat
1576318Schws5Schwannoma susceptibility QTL 50.0351nervous system integrity trait (VT:0010566)post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)1364497900109350286Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1364375743109350286Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1367635937109350286Rat

Markers in Region
RH127964  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21383,709,430 - 83,709,639 (+)MAPPERmRatBN7.2
Rnor_6.01389,661,864 - 89,662,072NCBIRnor6.0
Rnor_5.01394,288,730 - 94,288,938UniSTSRnor5.0
RGSC_v3.41387,181,738 - 87,181,946UniSTSRGSC3.4
Celera1383,340,118 - 83,340,326UniSTS
RH 3.4 Map13552.5UniSTS
Cytogenetic Map13q24UniSTS
RH139112  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81386,242,885 - 86,243,141 (+)Marker Load Pipeline
mRatBN7.21383,710,435 - 83,710,691 (+)MAPPERmRatBN7.2
Rnor_6.01389,662,869 - 89,663,124NCBIRnor6.0
Rnor_5.01394,289,735 - 94,289,990UniSTSRnor5.0
RGSC_v3.41387,182,743 - 87,182,998UniSTSRGSC3.4
Celera1383,341,123 - 83,341,378UniSTS
RH 3.4 Map13552.3UniSTS
Cytogenetic Map13q24UniSTS
AU049311  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21383,711,103 - 83,711,278 (+)MAPPERmRatBN7.2
Rnor_6.01389,663,537 - 89,663,711NCBIRnor6.0
Rnor_5.01394,290,403 - 94,290,577UniSTSRnor5.0
RGSC_v3.41387,183,411 - 87,183,585UniSTSRGSC3.4
Celera1383,341,791 - 83,341,965UniSTS
Cytogenetic Map13q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001003709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB186051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB441169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC099236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY169306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC087648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000004938   ⟹   ENSRNOP00000004938
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1386,241,779 - 86,248,522 (-)Ensembl
mRatBN7.2 Ensembl1383,709,330 - 83,716,076 (-)Ensembl
Rnor_6.0 Ensembl1389,661,763 - 89,668,473 (-)Ensembl
RefSeq Acc Id: NM_001003709   ⟹   NP_001003709
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81386,241,779 - 86,248,490 (-)NCBI
mRatBN7.21383,709,329 - 83,716,040 (-)NCBI
Rnor_6.01389,661,763 - 89,668,473 (-)NCBI
Rnor_5.01394,288,629 - 94,299,195 (-)NCBI
RGSC_v3.41387,181,637 - 87,188,347 (-)RGD
Celera1383,340,017 - 83,346,728 (-)RGD
Sequence:
RefSeq Acc Id: XM_006250251   ⟹   XP_006250313
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81386,241,780 - 86,248,684 (-)NCBI
mRatBN7.21383,709,330 - 83,716,129 (-)NCBI
Rnor_6.01389,661,763 - 89,668,513 (-)NCBI
Rnor_5.01394,288,629 - 94,299,195 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039090960   ⟹   XP_038946888
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81386,241,780 - 86,280,513 (-)NCBI
mRatBN7.21383,709,330 - 83,719,762 (-)NCBI
RefSeq Acc Id: XM_063272529   ⟹   XP_063128599
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81386,241,780 - 86,250,784 (-)NCBI
RefSeq Acc Id: NP_001003709   ⟸   NM_001003709
- UniProtKB: Q6BBI8 (UniProtKB/Swiss-Prot),   A6JFW9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250313   ⟸   XM_006250251
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000004938   ⟸   ENSRNOT00000004938
RefSeq Acc Id: XP_038946888   ⟸   XM_039090960
- Peptide Label: isoform X1
- UniProtKB: Q6BBI8 (UniProtKB/Swiss-Prot),   A6JFW9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128599   ⟸   XM_063272529
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6BBI8-F1-model_v2 AlphaFold Q6BBI8 1-167 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699002
Promoter ID:EPDNEW_R9527
Type:multiple initiation site
Name:Ufc1_2
Description:ubiquitin-fold modifier conjugating enzyme 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R9528  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01389,668,283 - 89,668,343EPDNEW
RGD ID:13699003
Promoter ID:EPDNEW_R9528
Type:initiation region
Name:Ufc1_1
Description:ubiquitin-fold modifier conjugating enzyme 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R9527  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01389,668,495 - 89,668,555EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303313 AgrOrtholog
BioCyc Gene G2FUF-17376 BioCyc
Ensembl Genes ENSRNOG00000003706 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000004938 ENTREZGENE
  ENSRNOT00000004938.6 UniProtKB/Swiss-Prot
Gene3D-CATH 3.10.110.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7310651 IMAGE-MGC_LOAD
InterPro UBQ-conjugating_enzyme/RWD UniProtKB/Swiss-Prot
  Ufc1 UniProtKB/Swiss-Prot
KEGG Report rno:445268 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105791 IMAGE-MGC_LOAD
NCBI Gene 445268 ENTREZGENE
PANTHER PTHR12921 UniProtKB/Swiss-Prot
  UBIQUITIN-FOLD MODIFIER-CONJUGATING ENZYME 1 UniProtKB/Swiss-Prot
Pfam UFC1 UniProtKB/Swiss-Prot
PhenoGen Ufc1 PhenoGen
PIRSF DUF1782 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000003706 RatGTEx
Superfamily-SCOP SSF54495 UniProtKB/Swiss-Prot
UniProt A6JFW9 ENTREZGENE, UniProtKB/TrEMBL
  A6JFX1 ENTREZGENE, UniProtKB/TrEMBL
  Q6BBI8 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-07 Ufc1  ubiquitin-fold modifier conjugating enzyme 1  Ufc1  Ufm1-conjugating enzyme 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-09-30 Ufc1        Symbol and Name status set to provisional 70820 PROVISIONAL