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Gene: Arhgap20 (Rho GTPase activating protein 20) Rattus norvegicus

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Symbol:

Arhgap20

Name:

Rho GTPase activating protein 20

RGD ID:

1303160

Description:

Predicted to enable GTPase activator activity. Predicted to be involved in regulation of Rho protein signal transduction. Orthologous to human ARHGAP20 (Rho GTPase activating protein 20); INTERACTS WITH 2,2',5,5'-tetrachlorobiphenyl; 3,3',4,4',5-pentachlorobiphenyl; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

RA and RhoGAP domain containing protein; RA and RhoGAP domain-containing protein; RARhoGAP; rho GTPase-activating protein 20; rho-type GTPase-activating protein 20; RhoGTPase activating protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ARHGAP20 (Rho GTPase activating protein 20)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Arhgap20 (Rho GTPase activating protein 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Arhgap20 (Rho GTPase activating protein 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ARHGAP20 (Rho GTPase activating protein 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ARHGAP20 (Rho GTPase activating protein 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Arhgap20 (Rho GTPase activating protein 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ARHGAP20 (Rho GTPase activating protein 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ARHGAP20 (Rho GTPase activating protein 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Arhgap20 (Rho GTPase activating protein 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Arhgap20 (Rho GTPase activating protein 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CENPW (centromere protein W)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	ARHGAP20 (Rho GTPase activating protein 20)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ARHGAP20 (Rho GTPase activating protein 20)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Mus musculus (house mouse):	Arhgap20 (Rho GTPase activating protein 20)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	arhgap20 (Rho GTPase activating protein 20)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	arhgap20 (Rho GTPase activating protein 20)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	RhoGAP71E	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PANTHER)
Caenorhabditis elegans (roundworm):	rga-2	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rga-2	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	arhgap20	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	arhgap20	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	60,970,480 - 61,055,199 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	60,970,475 - 61,055,198 (+)	Ensembl				GRCr8
mRatBN7.2	8	52,074,472 - 52,155,739 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	52,074,158 - 52,155,739 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	57,617,391 - 57,698,514 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	55,896,335 - 55,977,477 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	53,760,598 - 53,841,732 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	56,179,581 - 56,264,343 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	56,179,637 - 56,264,263 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	54,764,607 - 54,848,985 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	55,085,329 - 55,167,154 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	51,602,803 - 51,683,817 (+)	NCBI		Celera
RGSC_v3.1	8	55,104,382 - 55,186,208 (+)	NCBI
Cytogenetic Map	8	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

prostate cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,2',5,5'-tetrachlorobiphenyl (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

arsane (ISO)

arsenic atom (ISO)

Azoxymethane (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[b]fluoranthene (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlormequat chloride (EXP)

chlorpyrifos (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

dextran sulfate (ISO)

diclofenac (EXP)

diuron (EXP)

doxorubicin (ISO)

endosulfan (EXP)

fulvestrant (ISO)

furan (EXP)

gentamycin (EXP)

graphite (EXP)

indometacin (ISO)

isoprenaline (ISO)

lead(0) (ISO)

melphalan (ISO)

nitrofen (EXP)

okadaic acid (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

PCB138 (EXP)

phorbol 13-acetate 12-myristate (ISO)

potassium chromate (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

tetraphene (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

triclosan (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of Rho protein signal transduction (IEA,TAS)

regulation of small GTPase mediated signal transduction (IEA)

signal transduction (IEA)

Molecular Function

GTPase activator activity (IBA,IEA)

small GTPase binding (TAS)

References

References - curated

#	Reference Title	Reference Citation
1.	Identification of RARhoGAP, a novel putative RhoGAP gene expressed in male germ cells.	Curry BJ, etal., Genomics 2004 Aug;84(2):406-18.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:15057822	PMID:16751776

Genomics

Comparative Map Data

Arhgap20
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	60,970,480 - 61,055,199 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	60,970,475 - 61,055,198 (+)	Ensembl				GRCr8
mRatBN7.2	8	52,074,472 - 52,155,739 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	52,074,158 - 52,155,739 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	57,617,391 - 57,698,514 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	55,896,335 - 55,977,477 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	53,760,598 - 53,841,732 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	56,179,581 - 56,264,343 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	56,179,637 - 56,264,263 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	54,764,607 - 54,848,985 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	55,085,329 - 55,167,154 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	51,602,803 - 51,683,817 (+)	NCBI		Celera
RGSC_v3.1	8	55,104,382 - 55,186,208 (+)	NCBI
Cytogenetic Map	8	q24	NCBI

ARHGAP20
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	110,577,043 - 110,713,189 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	110,577,042 - 110,713,189 (-)	Ensembl			hg38	GRCh38
GRCh37	11	110,447,767 - 110,583,912 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	109,952,976 - 110,088,661 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	11	107,601,250 - 107,736,673 (-)	NCBI		Celera
Cytogenetic Map	11	q22.3-q23.1	NCBI
HuRef	11	106,372,404 - 106,508,318 (-)	NCBI		HuRef
CHM1_1	11	110,330,881 - 110,467,063 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	110,587,261 - 110,723,194 (-)	NCBI		T2T-CHM13v2.0

Arhgap20
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	51,676,651 - 51,765,158 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	51,676,637 - 51,765,156 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	51,765,351 - 51,853,059 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	51,765,337 - 51,853,856 (+)	Ensembl			mm10	GRCm38
MGSCv37	9	51,573,457 - 51,661,164 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	51,517,717 - 51,605,424 (+)	NCBI		MGSCv36	mm8
Celera	9	49,059,923 - 49,127,194 (+)	NCBI		Celera
Cytogenetic Map	9	A5.3	NCBI
cM Map	9	28.62	NCBI

Arhgap20
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955412	12,430,064 - 12,515,925 (-)	Ensembl
ChiLan1.0	NW_004955412	12,433,350 - 12,515,922 (-)	NCBI	ChiLan1.0	ChiLan1.0

ARHGAP20
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	111,321,334 - 111,459,794 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	112,412,495 - 112,550,906 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	105,457,931 - 105,593,644 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	109,304,336 - 109,437,461 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	109,289,419 - 109,437,294 (-)	Ensembl			panPan2	panpan1.1

ARHGAP20
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	22,228,824 - 22,369,835 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	22,228,935 - 22,368,121 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	22,149,020 - 22,289,242 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	22,255,349 - 22,395,633 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	22,255,261 - 22,395,630 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	22,314,094 - 22,454,272 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	22,213,841 - 22,354,170 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	22,262,896 - 22,403,278 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Arhgap20
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	92,930,470 - 93,043,015 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936612	3,682,622 - 3,776,022 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936612	3,682,673 - 3,774,032 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARHGAP20
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	38,474,865 - 38,582,242 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	38,471,049 - 38,582,221 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	43,169,036 - 43,226,358 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ARHGAP20
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	101,920,074 - 102,047,171 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	101,921,839 - 102,046,751 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666043	23,906,022 - 24,029,747 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Arhgap20
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624784	5,598,476 - 5,710,988 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624784	5,595,524 - 5,711,197 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Arhgap20
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	14	54,717,427 - 54,798,953 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Arhgap20
472 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	350
Count of miRNA genes:	128
Interacting mature miRNAs:	144
Transcripts:	ENSRNOT00000035989, ENSRNOT00000059078
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313057	Bss76	Bone structure and strength QTL 76	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	8	39106258	91341052	Rat
1298065	Scl16	Serum cholesterol level QTL 16	3.8		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	39752803	84752803	Rat
1549908	Neudeg1	Neurodegradation QTL 1	5.5	0	nervous system integrity trait (VT:0010566)	logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)	8	58337123	103337123	Rat
2317030	Wbc5	White blood cell count QTL 5	3.21	0.005	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	8	16994642	61994642	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	49849908	118871671	Rat
2313067	Bss77	Bone structure and strength QTL 77	3.1	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	8	39106258	91341052	Rat
1578769	Uae31	Urinary albumin excretion QTL 31	3.3	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	39106363	103375781	Rat
1298079	Activ2	Activity QTL 2	9.5	0.000001	voluntary movement trait (VT:0003491)	rearing measurement (CMO:0001515)	8	50763951	95763951	Rat
11556286	Cm81	Cardiac mass QTL 81		0.01	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	39106258	84106258	Rat
70161	Bp62	Blood pressure QTL 62	2.9	0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	51589699	99045312	Rat
1358912	Bw51	Body weight QTL 51	2.95		body mass (VT:0001259)	body weight (CMO:0000012)	8	60248093	105248093	Rat
1578765	Klgr1	Kidney lesion grade QTL 1	3.3	0.0001	kidney morphology trait (VT:0002135)	organ lesion measurement (CMO:0000677)	8	39106363	103375781	Rat
2317051	Aia18	Adjuvant induced arthritis QTL 18	2.42		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	8	16994642	61994642	Rat
61464	Niddm11	Non-insulin dependent diabetes mellitus QTL 11	3.1	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	44477926	89477926	Rat
4889938	Bss89	Bone structure and strength QTL 89	3.8		tibia size trait (VT:0100001)	tibia cortical bone volume (CMO:0001725)	8	58991697	91341052	Rat
1578755	Pur5	Proteinuria QTL 5	3.3	0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	8	39106258	103375958	Rat
2313086	Bss60	Bone structure and strength QTL 60	4.1	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	8	58991697	91341052	Rat
2313088	Bss75	Bone structure and strength QTL 75	3.1	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	8	39106258	91341052	Rat
631210	Bw3	Body weight QTL3	5.9		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	8	61019838	121662124	Rat
1358896	Bp262	Blood pressure QTL 262	2.89		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	35464071	107982864	Rat
731182	Uae24	Urinary albumin excretion QTL 24	6.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	47541419	92541419	Rat
631648	Stl5	Serum triglyceride level QTL 5	4	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	35464071	71842899	Rat
724514	Uae15	Urinary albumin excretion QTL 15	2.9		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	37760859	61459705	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	8	39106258	84106258	Rat
1331837	Bw23	Body weight QTL 23	4.19	0.00007	body mass (VT:0001259)	body weight (CMO:0000012)	8	55428416	107963099	Rat
631842	Inf1	Infertility severity QTL 1	4.1	0.001	seminal gland mass (VT:0010524)	seminal vesicle wet weight (CMO:0001603)	8	31543661	76543661	Rat
737824	Hcar10	Hepatocarcinoma resistance QTL 10	2.9		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	8	49610204	68373388	Rat
1359033	Bp273	Blood pressure QTL 273			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	39106258	84106258	Rat
1331769	Rf39	Renal function QTL 39	3.871		urine output (VT:0003620)	timed urine volume (CMO:0000260)	8	50763951	107970527	Rat
61358	Bp39	Blood pressure QTL 39	2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	44447837	89447837	Rat
1358906	Bp253	Blood pressure QTL 253	4	0.0004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	49610204	94610204	Rat
1358907	Cm40	Cardiac mass QTL 40	1.89		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	35464071	107982864	Rat
1598824	Memor4	Memory QTL 4	2.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	8	17993862	62252873	Rat
1331744	Bp217	Blood pressure QTL 217	3.398		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	39106258	67378345	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	55428333	127966348	Rat
2313046	Bss78	Bone structure and strength QTL 78	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	8	39106258	91341052	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	39106363	114525825	Rat
1582254	Kidm31	Kidney mass QTL 31	3		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	8	49245178	94245178	Rat
724540	Uae8	Urinary albumin excretion QTL 8	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	8	39106258	103375958	Rat
1358892	Kidm26	Kidney mass QTL 26	3.69		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	35464071	107982864	Rat
631216	Stl9	Serum triglyceride level QTL 9	4.71	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	8	50763951	67219641	Rat
1582243	Bw66	Body weight QTL 66	3.4	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	8	49245178	94245178	Rat
5684973	Bss100	Bone structure and strength QTL 100	4.7		tibia area (VT:1000281)	tibia area measurement (CMO:0001382)	8	58991697	91341052	Rat
61373	Mcs4	Mammary carcinoma susceptibility QTL 4	1.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	8	44475043	89475043	Rat

Markers in Region

D8Rat196

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	8	61,041,284 - 61,041,460 (+)	Marker Load Pipeline
mRatBN7.2	8	52,144,971 - 52,145,147 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	56,250,428 - 56,250,603	NCBI	Rnor6.0
Rnor_5.0	8	54,835,070 - 54,835,245	UniSTS	Rnor5.0
RGSC_v3.4	8	55,156,387 - 55,156,563	RGD	RGSC3.4
RGSC_v3.4	8	55,156,388 - 55,156,563	UniSTS	RGSC3.4
Celera	8	51,673,010 - 51,673,185	UniSTS
RGSC_v3.1	8	55,175,441 - 55,175,617	RGD
FHH x ACI Map	8	46.93	UniSTS
FHH x ACI Map	8	46.93	RGD
Cytogenetic Map	8	q24	UniSTS

BF404613

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	52,123,478 - 52,123,677 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	56,228,897 - 56,229,095	NCBI	Rnor6.0
Rnor_5.0	8	54,813,503 - 54,813,701	UniSTS	Rnor5.0
RGSC_v3.4	8	55,134,733 - 55,134,931	UniSTS	RGSC3.4
Celera	8	51,651,543 - 51,651,741	UniSTS
RH 3.4 Map	8	566.09	UniSTS
Cytogenetic Map	8	q24	UniSTS

RH137484

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	52,151,279 - 52,151,491 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	56,256,735 - 56,256,946	NCBI	Rnor6.0
Rnor_5.0	8	54,841,377 - 54,841,588	UniSTS	Rnor5.0
RGSC_v3.4	8	55,162,695 - 55,162,906	UniSTS	RGSC3.4
Celera	8	51,679,358 - 51,679,569	UniSTS
Cytogenetic Map	8	q24	UniSTS

RH138047

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	52,150,324 - 52,150,476 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	56,255,781 - 56,255,932	NCBI	Rnor6.0
Rnor_5.0	8	54,840,423 - 54,840,574	UniSTS	Rnor5.0
RGSC_v3.4	8	55,161,741 - 55,161,892	UniSTS	RGSC3.4
Celera	8	51,678,404 - 51,678,555	UniSTS
RH 3.4 Map	8	566.4	UniSTS
Cytogenetic Map	8	q24	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
13	12	67	162	87	86	55	30	55	6	287	130	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001434330	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434331	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434332	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_213629	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_197774	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243047	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265878	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265879	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010054006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010054007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY501475	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ620532	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000035989 ⟹ ENSRNOP00000034071

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	60,970,475 - 61,055,198 (+)	Ensembl
mRatBN7.2 Ensembl	8	52,074,158 - 52,155,739 (+)	Ensembl
Rnor_6.0 Ensembl	8	56,179,637 - 56,264,263 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000059078 ⟹ ENSRNOP00000055856

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	52,074,472 - 52,155,739 (+)	Ensembl
Rnor_6.0 Ensembl	8	56,179,816 - 56,261,194 (+)	Ensembl

RefSeq Acc Id:

NM_213629 ⟹ NP_998794

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	60,970,811 - 61,052,051 (+)	NCBI
mRatBN7.2	8	52,074,472 - 52,155,739 (+)	NCBI
Rnor_6.0	8	56,179,816 - 56,261,194 (+)	NCBI
Rnor_5.0	8	54,764,607 - 54,848,985 (+)	NCBI
RGSC_v3.4	8	55,085,329 - 55,167,154 (+)	RGD
Celera	8	51,602,803 - 51,683,817 (+)	RGD

Sequence:

show sequence

GGGCGCGCGCCTAGCGCCTAGAAGGGTTAACGGCCCCCGTGTGGGGTGGGGAGGTCACCTCCCG
GGATCCCCCGCTATCTTCTCTGGTGGGAACGGGTCTCGGAGAAGCCCCTTGCCTCTCCACCTCT
GACCCGGGTTGTGCCTCCCTGCGAGCCTCCCGAGGTGGCCTTGACCCGACAGCCTGAGGAAGAA
AATGAAAACGCTAGCAGAAAGGAGGAGAAGCGCCCCATCCCTCATCCTGGACAAAGCCTTACAG
AAGCGGCCGAGCACCAGAGACAGCCATTCTGCCAGCATTGACACGTGTGCGTTTCTGTCGTCGT
TCATGTGCTCCAGTCGGACTCTGCTGATTGATGGTCCAGTGGAACTTAAACGAGGCCTGCAGAG
GCAGGAGAGGCATCTTTTCCTATTCAACGATCTGTTTGTCTCGGCCAAAATCAAATATAACAAC
AATTTTAAGATAAAGAATAAAGTAAAGCTGGCCGACATGTGGACAGCTAGCTGTGTGGATGAAG
TCGGGGAAGGCAACACAAACGCTCTGAAGTCCTTTGTCCTGGGCTGGCCCACAGTGAACTTCGT
GGCCACTTTCAGTTCTCCAGAACAAAAGGACAAATGGCTCTCTCTCCTTCAGAGATACATCGCT
CTAGAAAAGGAAAAAGACTACCCGAAGAGCATCCCCCTCAAAATCTTCGCCAAGGACATTGGGA
ATTGCGCCTATTTCAAAACTATATCAGTCATGAACTCAGACACAGCGAGTGAAGTCATCAACAT
GTCCCTGCAAATGTTAGGGATAACTGGCTCCGAGAGAGATTACCAACTATGGGTAAATTCTGGA
AAAGAAGCGGCACCATACCCACTCATTGGACACGAGTATCCTTATGGGATCAAAATGAGCCATC
TCCGAGACACTGCCCTTCTGACGCAGGGATCAAAAGACTTCGCCAGCCCATCCCAGCTCCAGGA
GCCTTTCCTCATGGAGCAGCTGCCCCGAGAGATGCAATGCCAGTTCATCCTGAAACCTACTCGC
CTGGCGACAGCCCAGCAGCTGAGCGATTCCAGCCATAAGACATATAAGAGGAGGCGCTCCATCA
TCAACTGGGCTTTCTGGCGGGGCTCTAGCACACACCTGGACAATCTGCCCGTGTCACCAACATC
CCCTATGCCAGGGCAGCTCTTTGGAGTTTCTTTACCAGATATTTGCGAGAACGACAATCTGCCA
AAGCCCATCTTGGACATGCTCTCCTTTCTTAACCAAAAAGGCCCCCTCACGAAGGGCATCTTCA
GGCAGTCGGCCAACATGAAGTCTTGCCGAGAGCTAAAGGAGAAACTGAATTCTGGAATTGAAGT
CCACCTCGACTGTGAATCCATCTTTGTGATAGCATCCGTGTTGAAGGATTTTCTGAGAAATATC
CCAGAAAGTATATTTTCATCAGATCTGTATGATCACTGGGTCTGTGTAATGGATCAAGGAAATG
ATGAAGAAAAAATAAATACAATTCAAAGGCTATTAGATCAGCTTCCCAGAGCCAATGTTGTTTT
CCTAAGGTATCTGTTTGGGGTATTACACAACATTGAACAACATTCCTTATCTAATCAGATGACT
GCATTTAACTTAGCAGTGTGTATCGCTCCAAGCATTCTTTGGCCTCCTGCTTCCTCCAGTCCAG
AGCTAGAAAATGAATTTACAAAAAAGGTTTCTCTCCTTATACAATTTCTGATTGAAAATTGCTG
TAGGATATTTGGAGAAGAAATCACTTCTCTCTTGGGGGAGCTTTCTGAGAGAAGCGACAGAGAA
CACACCCCAGATACGTCTTGCTTCCAGTTGAACGACTCCTCCTATGACAGCTTAGAAAACGAGC
TCAATGAGGATGCCGATGCCCCGTGCAGCGACCTGGTCAAACGGCTCGGCCAGGGTAGCAGGAG
CATGGACCCAGTCTTAACCCTCAGTGACTATGACCTTGAACCGCCCGAAGCGGAAGGCCTTTTA
ACCCTGAGCAGCCTTGACTTAGATCAGTCTAAAGAGGAGCACATTCGAACGAAACAACCCCTGG
AGACCAAGCCGGTGAGTGTTTTCGTAGCCTACAGGAAGGTTTCACTGGGGGAGCATACTAGGGC
CCCCGATGGCCCCGGTACACCCAGCTGCCTGCCTGCAACTGCCTCAGATGCCCGGAAAGTCTTT
CGGCGGCACCGGCGCTCCTCAGAGCCCAGCATTGACTATCTAGACGCAAAGCTTTCCTATCTCC
GGGAGTTTTACCAGAAGAAGTTACGCAAGTCCAGCTGTGATGCCGTGCTCTCTAGAAAGGATGA
GGATTACCTGAAGCAGACCCAGCCTCAGAAGAAAGGGGATCAGAGGTGTTTTAAACAGAGCTCA
GTGACGGGCACTGACGTCAGCAAGAGGAACACTGCTAATGAAAACATTAAGAAGAAAAGCTTGT
CTGGTCATGAAGGAAATCAAGAGACACCTTTCACTAAGTCCAAGCCAGTGGCCATTTCTGTGGC
ATCTTACATGTCCTCCCAGGACCATTCCTGGGAGCAGCCCTTTGAAGCAGACGCATGCAGGTTC
TCCCCACCACACATAGCAGATGCCCAGAAGAGCTCACGGGCGCATCGGCGCTGTTCCGAACCCA
GCATCGATGACCAGAACTACAAGCTGTCCTATCTCAGGGGGGTCTACTCAAAGAAGCAAAGTAA
AACCAGCTGTGAGGCTGGCCTCTTGCATGGCGAAGAGGATTATCTCAAAAGGCATAAGTCTTTG
CAAATGGAGGGGCAAAAGCTCATTAATCAGAGTTTGGTCATGGGGATTGAGGTGGGCAAGAGCA
GCAGCAGCACAAACCAAAGTACTGAGAAGGTTTTGCCCCCAAGACTAAACCTTTGCCCAAGGGC
TAGCTATTCCAGTTTATCTTCCCCCGGCACATCCCCGTCAGGTTCCTCGGTAAGCTCCCAGGAC
AGTGCTTTCTCTCAGATCTGTGAACACTCGGTGTTTACACCCACAGAAACTTCCTCTCCAATAG
ATTGCACTTTTCGGGCTCAGAGAAAACAGGAAGAGCTTTCTTCAGACTGTGACAGTCCCAGCCT
CGTTTCTGGAATGCCGGGTCCCTCCATGGGGCAGGCCAGCAGCCACCTAGCTTATTTAAGAAAG
GGTACCACAGAGCAGCTACCACAAATGCATTCTGTAACTCTTCACCCCAGCACATGGTTGAGAA
GCGGCTTGGTCACTTTAAAAAACTGGTCCCTCAAAAAGAAAACAAAAGCAGCCAGACCCGAGGA
CAGAAAAGACTGTTCCTTAAAAGAACCTCTGGAATTACCTGCATGTGCTGCTGGGACCCCAGAG
GCTGACTCTCTACAAGAGAGCCAGGAGGACATACACCTAGGGGTAGATGAAGAAGCTGGGCAAA
CTACCTGTGGGCTCAGCTCTTATGCCTGTCAGGACTCAGAGCAACACGCCAGCTCCCCGTTCTG
CCTGGCAGGAAGCAGACTCACGCTTGGTATCAAGTTGCACGAGGGAGAGGAGAGTGGAGGGCAG
TACCCTTGTGATAACCCTTGGGAAGGAGCCACTTCAGGTCTGGAGACCTCAGAGGATGCAGCCA
ACACAGGTGTGGAACCTGCGACAGTTTGCAATGACGGGGACAGACATTAACCAAAGACCACTGC
CTACAATAAGAATGCTATCAAAACAACCTGAAGTCTTTAAGGACAGGGACTGGGCCAATAAAAA
CACAGACAGTAATGAGATAACCCCGCCTGTAAGGCACCTGGGATAGGTAGCACAAGGACAATCA
TTGCTAAGTGGCAGTTTCTTTGATGCAGTTACGTGGCAAAACCCTGTCAAGATGTTTCATGATC
TTAAAGTTGTGAAAGGCTTTTCCTATTAAAGCATGGGTTGAGTT

hide sequence

RefSeq Acc Id:

XM_063265878 ⟹ XP_063121948

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	60,970,480 - 61,055,199 (+)	NCBI

RefSeq Acc Id:

XM_063265879 ⟹ XP_063121949

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	60,970,485 - 61,046,505 (+)	NCBI

RefSeq Acc Id:

XR_010054006

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	60,970,485 - 61,049,992 (+)	NCBI

RefSeq Acc Id:

XR_010054007

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	60,970,485 - 61,049,992 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001421259	(Get FASTA)	NCBI Sequence Viewer
	NP_001421260	(Get FASTA)	NCBI Sequence Viewer
	NP_001421261	(Get FASTA)	NCBI Sequence Viewer
	NP_998794	(Get FASTA)	NCBI Sequence Viewer
	XP_063121948	(Get FASTA)	NCBI Sequence Viewer
	XP_063121949	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAS77204	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000034071
	ENSRNOP00000034071.3
	ENSRNOP00000055856.1
GenBank Protein	Q6REY9	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_998794 ⟸ NM_213629

- UniProtKB:

A6J4H7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKTLAERRRSAPSLILDKALQKRPSTRDSHSASIDTCAFLSSFMCSSRTLLIDGPVELKRGLQR
QERHLFLFNDLFVSAKIKYNNNFKIKNKVKLADMWTASCVDEVGEGNTNALKSFVLGWPTVNFV
ATFSSPEQKDKWLSLLQRYIALEKEKDYPKSIPLKIFAKDIGNCAYFKTISVMNSDTASEVINM
SLQMLGITGSERDYQLWVNSGKEAAPYPLIGHEYPYGIKMSHLRDTALLTQGSKDFASPSQLQE
PFLMEQLPREMQCQFILKPTRLATAQQLSDSSHKTYKRRRSIINWAFWRGSSTHLDNLPVSPTS
PMPGQLFGVSLPDICENDNLPKPILDMLSFLNQKGPLTKGIFRQSANMKSCRELKEKLNSGIEV
HLDCESIFVIASVLKDFLRNIPESIFSSDLYDHWVCVMDQGNDEEKINTIQRLLDQLPRANVVF
LRYLFGVLHNIEQHSLSNQMTAFNLAVCIAPSILWPPASSSPELENEFTKKVSLLIQFLIENCC
RIFGEEITSLLGELSERSDREHTPDTSCFQLNDSSYDSLENELNEDADAPCSDLVKRLGQGSRS
MDPVLTLSDYDLEPPEAEGLLTLSSLDLDQSKEEHIRTKQPLETKPVSVFVAYRKVSLGEHTRA
PDGPGTPSCLPATASDARKVFRRHRRSSEPSIDYLDAKLSYLREFYQKKLRKSSCDAVLSRKDE
DYLKQTQPQKKGDQRCFKQSSVTGTDVSKRNTANENIKKKSLSGHEGNQETPFTKSKPVAISVA
SYMSSQDHSWEQPFEADACRFSPPHIADAQKSSRAHRRCSEPSIDDQNYKLSYLRGVYSKKQSK
TSCEAGLLHGEEDYLKRHKSLQMEGQKLINQSLVMGIEVGKSSSSTNQSTEKVLPPRLNLCPRA
SYSSLSSPGTSPSGSSVSSQDSAFSQICEHSVFTPTETSSPIDCTFRAQRKQEELSSDCDSPSL
VSGMPGPSMGQASSHLAYLRKGTTEQLPQMHSVTLHPSTWLRSGLVTLKNWSLKKKTKAARPED
RKDCSLKEPLELPACAAGTPEADSLQESQEDIHLGVDEEAGQTTCGLSSYACQDSEQHASSPFC
LAGSRLTLGIKLHEGEESGGQYPCDNPWEGATSGLETSEDAANTGVEPATVCNDGDRH

hide sequence

Ensembl Acc Id:

ENSRNOP00000034071 ⟸ ENSRNOT00000035989

Ensembl Acc Id:

ENSRNOP00000055856 ⟸ ENSRNOT00000059078

RefSeq Acc Id:	XP_063121948 ⟸ XM_063265878
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063121949 ⟸ XM_063265879
- Peptide Label:	isoform X2

Protein Domains

PH Ras-associating Rho-GAP

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6REY9-F1-model_v2	AlphaFold	Q6REY9	1-1182	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695970

Promoter ID:

EPDNEW_R6486

Type:

single initiation site

Name:

Arhgap20_2

Description:

Rho GTPase activating protein 20

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R6487

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	56,179,608 - 56,179,668	EPDNEW

RGD ID:

13695963

Promoter ID:

EPDNEW_R6487

Type:

single initiation site

Name:

Arhgap20_1

Description:

Rho GTPase activating protein 20

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R6486

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	56,179,838 - 56,179,898	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1303160	AgrOrtholog
BioCyc Gene	G2FUF-30490	BioCyc
Ensembl Genes	ENSRNOG00000025624	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000035989	ENTREZGENE
	ENSRNOT00000035989.6	UniProtKB/Swiss-Prot
	ENSRNOT00000059078.2	UniProtKB/Swiss-Prot
Gene3D-CATH	1.10.555.10	UniProtKB/Swiss-Prot
	2.30.29.30	UniProtKB/Swiss-Prot
InterPro	ARHGAP20-like_RhoGAP	UniProtKB/Swiss-Prot
	ARHGAP20_PH	UniProtKB/Swiss-Prot
	ARHGAP20_RA	UniProtKB/Swiss-Prot
	PH-like_dom_sf	UniProtKB/Swiss-Prot
	PH_domain	UniProtKB/Swiss-Prot
	RA_dom	UniProtKB/Swiss-Prot
	Rho_GTPase_activation_prot	UniProtKB/Swiss-Prot
	RhoGAP_dom	UniProtKB/Swiss-Prot
	Ubiquitin-like_domsf	UniProtKB/Swiss-Prot
KEGG Report	rno:367085	UniProtKB/Swiss-Prot
NCBI Gene	367085	ENTREZGENE
PANTHER	RHO GTPASE-ACTIVATING PROTEIN 20	UniProtKB/Swiss-Prot
	T-CELL ACTIVATION RHO GTPASE ACTIVATING PROTEIN-RELATED	UniProtKB/Swiss-Prot
Pfam	PF00788	UniProtKB/Swiss-Prot
	RHG20_PH	UniProtKB/Swiss-Prot
	RhoGAP	UniProtKB/Swiss-Prot
PhenoGen	Arhgap20	PhenoGen
PROSITE	PS50200	UniProtKB/Swiss-Prot
	RHOGAP	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000025624	RatGTEx
SMART	RhoGAP	UniProtKB/Swiss-Prot
	SM00233	UniProtKB/Swiss-Prot
Superfamily-SCOP	PH domain-like	UniProtKB/Swiss-Prot
	SSF48350	UniProtKB/Swiss-Prot
	SSF54236	UniProtKB/Swiss-Prot
UniProt	A6J4H7	ENTREZGENE, UniProtKB/TrEMBL
	Q6REY9	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-01-11	Arhgap20	Rho GTPase activating protein 20	RARhoGAP	RA and RhoGAP domain containing protein	Symbol and Name updated to reflect Human and Mouse nomenclature	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar