Smarca2 (SWI/SNF related BAF chromatin remodeling complex subunit ATPase 2) - Rat Genome Database

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Gene: Smarca2 (SWI/SNF related BAF chromatin remodeling complex subunit ATPase 2) Rattus norvegicus
Analyze
Symbol: Smarca2
Name: SWI/SNF related BAF chromatin remodeling complex subunit ATPase 2 (Ensembl:SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2)
RGD ID: 1302988
Description: Enables chromatin binding activity. Involved in spermatid development. Predicted to be located in nucleoplasm. Predicted to be part of SWI/SNF complex; nBAF complex; and npBAF complex. Predicted to be active in chromatin and nucleus. Human ortholog(s) of this gene implicated in Nicolaides-Baraitser syndrome and blepharophimosis-impaired intellectual development syndrome. Orthologous to human SMARCA2 (SWI/SNF related BAF chromatin remodeling complex subunit ATPase 2); PARTICIPATES IN histone modification pathway; SWI/SNF family mediated chromatin remodeling pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: probable global transcription activator SNF2L2; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81233,617,277 - 233,784,908 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1233,617,366 - 233,784,869 (+)EnsemblGRCr8
mRatBN7.21224,191,125 - 224,358,640 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1224,191,125 - 224,358,684 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1232,628,052 - 232,795,552 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01239,558,151 - 239,725,654 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01232,378,904 - 232,546,407 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01244,615,811 - 244,783,736 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1244,615,821 - 244,782,706 (+)Ensemblrn6Rnor6.0
Rnor_5.01251,867,320 - 252,035,241 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41230,015,057 - 230,183,451 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1221,383,226 - 221,550,796 (+)NCBICelera
RGSC_v3.11230,179,079 - 230,347,474 (+)NCBI
Cytogenetic Map1q52NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-epigallocatechin 3-gallate  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,4-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
acrylamide  (EXP,ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amitrole  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
choline  (ISO)
cobalt dichloride  (ISO)
cocaine  (EXP)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (EXP,ISO)
decabromodiphenyl ether  (EXP,ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
ethanol  (ISO)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
geldanamycin  (ISO)
geraniol  (ISO)
glafenine  (EXP)
hydrazine  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
mercury dibromide  (ISO)
methapyrilene  (ISO)
methimazole  (EXP)
methylmercury chloride  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
promegestone  (ISO)
rac-lactic acid  (ISO)
riddelliine  (ISO)
rimonabant  (ISO)
rotenone  (EXP,ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (EXP,ISO)
triptonide  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (IBA,IEA,ISO)
chromosome  (IEA)
nBAF complex  (ISO)
npBAF complex  (ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IEA,ISO)
RSC-type complex  (IEA)
SWI/SNF complex  (IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Insights into role of bromodomain, testis-specific (Brdt) in acetylated histone H4-dependent chromatin remodeling in mammalian spermiogenesis. Dhar S, etal., J Biol Chem. 2012 Feb 24;287(9):6387-405. doi: 10.1074/jbc.M111.288167. Epub 2012 Jan 3.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. ATP-dependent chromatin remodeling: genetics, genomics and mechanisms. Hargreaves DC and Crabtree GR, Cell Res. 2011 Mar;21(3):396-420. doi: 10.1038/cr.2011.32. Epub 2011 Mar 1.
4. Mammalian chromatin remodeling complex SWI/SNF is essential for enhanced expression of the albumin gene during liver development. Inayoshi Y, etal., J Biochem. 2006 Feb;139(2):177-88.
5. Chromatin remodeling and histone modification in the conversion of oligodendrocyte precursors to neural stem cells. Kondo T and Raff M, Genes Dev. 2004 Dec 1;18(23):2963-72.
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. Altered control of cellular proliferation in the absence of mammalian brahma (SNF2alpha). Reyes JC, etal., EMBO J 1998 Dec 1;17(23):6979-91.
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Comprehensive gene review and curation RGD comprehensive gene curation
12. The bromodomain: From epigenome reader to druggable target. Sanchez R, etal., Biochim Biophys Acta. 2014 Aug;1839(8):676-685. doi: 10.1016/j.bbagrm.2014.03.011. Epub 2014 Mar 28.
13. The spectrum of SWI/SNF mutations, ubiquitous in human cancers. Shain AH and Pollack JR, PLoS One. 2013;8(1):e55119. doi: 10.1371/journal.pone.0055119. Epub 2013 Jan 23.
Additional References at PubMed
PMID:8208605   PMID:9603422   PMID:11078522   PMID:12065415   PMID:12368262   PMID:14660596   PMID:15774904   PMID:17640523   PMID:17855369   PMID:17984088   PMID:19342595   PMID:22368283  
PMID:23785148   PMID:24137001   PMID:24335282  


Genomics

Comparative Map Data
Smarca2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81233,617,277 - 233,784,908 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1233,617,366 - 233,784,869 (+)EnsemblGRCr8
mRatBN7.21224,191,125 - 224,358,640 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1224,191,125 - 224,358,684 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1232,628,052 - 232,795,552 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01239,558,151 - 239,725,654 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01232,378,904 - 232,546,407 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01244,615,811 - 244,783,736 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1244,615,821 - 244,782,706 (+)Ensemblrn6Rnor6.0
Rnor_5.01251,867,320 - 252,035,241 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41230,015,057 - 230,183,451 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1221,383,226 - 221,550,796 (+)NCBICelera
RGSC_v3.11230,179,079 - 230,347,474 (+)NCBI
Cytogenetic Map1q52NCBI
SMARCA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3892,015,347 - 2,193,620 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl91,980,290 - 2,193,624 (+)Ensemblhg38GRCh38
GRCh3792,015,347 - 2,193,620 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3692,005,342 - 2,183,624 (+)NCBIBuild 36Build 36hg18NCBI36
Build 3492,005,341 - 2,183,624NCBI
Celera91,933,296 - 2,111,552 (+)NCBICelera
Cytogenetic Map9p24.3NCBI
HuRef91,969,240 - 2,147,484 (+)NCBIHuRef
CHM1_192,015,467 - 2,193,714 (+)NCBICHM1_1
T2T-CHM13v2.092,017,871 - 2,196,083 (+)NCBIT2T-CHM13v2.0
Smarca2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391926,582,578 - 26,755,721 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1926,582,450 - 26,755,722 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381926,605,073 - 26,778,321 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1926,605,050 - 26,778,322 (+)Ensemblmm10GRCm38
MGSCv371926,679,650 - 26,852,811 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361926,672,257 - 26,845,418 (+)NCBIMGSCv36mm8
Celera1927,388,592 - 27,561,569 (+)NCBICelera
Cytogenetic Map19C1NCBI
cM Map1921.17NCBI
Smarca2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554346,420,854 - 6,594,425 (+)Ensembl
ChiLan1.0NW_0049554346,420,850 - 6,592,797 (+)NCBIChiLan1.0ChiLan1.0
SMARCA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211122,394,494 - 122,574,119 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan19122,400,390 - 122,580,062 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v091,818,004 - 1,997,652 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.192,043,336 - 2,189,409 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl92,013,237 - 2,189,409 (+)EnsemblpanPan2panpan1.1
SMARCA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1190,709,221 - 90,884,295 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl190,712,520 - 90,883,622 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha191,177,680 - 91,352,646 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0191,256,337 - 91,431,025 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl191,270,959 - 91,431,021 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1190,903,604 - 91,078,531 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0190,622,040 - 90,796,824 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0191,390,477 - 91,565,374 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Smarca2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947138,171,713 - 138,337,488 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365032,835,496 - 3,001,381 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365032,835,512 - 3,001,365 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SMARCA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1219,573,535 - 219,815,421 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11219,624,773 - 219,815,438 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21245,489,523 - 245,677,930 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SMARCA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11277,364,468 - 77,546,356 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1277,375,500 - 77,546,314 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603865,710,587 - 65,892,953 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Smarca2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247366,695,658 - 6,865,809 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247366,681,491 - 6,863,403 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Smarca2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1226,661,872 - 26,810,885 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Smarca2
1473 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:93
Count of miRNA genes:83
Interacting mature miRNAs:88
Transcripts:ENSRNOT00000016740
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8693637Alc29Alcohol consumption QTL 292.70.258drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)1217412367243666627Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1160111531262090437Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1160573753266453731Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1207243873252243873Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1186658830266453731Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1210980612255980612Rat
61455Niddm7Non-insulin dependent diabetes mellitus QTL 75.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1223964326248681945Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1226175591270518180Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1205233991267096252Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1218829748263829748Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1186658830266453731Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1205233991267096252Rat
1600397Edcs4Endometrial carcinoma susceptibility QTL 42.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)1176288899270518180Rat
631838Niddm36Non-insulin dependent diabetes mellitus QTL 360.01insulin secretion trait (VT:0003564)calculated pancreatic islet insulin release measurement (CMO:0001217)1193964073238964073Rat
8693661Alc34Alcohol consumption QTL 342.20.611drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)1217412367238041033Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1162548015270518180Rat
152025235Bw194Body weight QTL 1944.86body mass (VT:0001259)1132966869252856240Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1205233991267096252Rat
2293694Bss38Bone structure and strength QTL 387.050.0001femur strength trait (VT:0010010)femur stiffness (CMO:0001674)1210980612255980612Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1152919152268496042Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1160111531262090437Rat
1300145Rf7Renal function QTL 72.96urine creatinine amount (VT:0010540)urine creatinine level (CMO:0000125)1194575422239575422Rat
8655655Arrd2Age-related retinal degeneration QTL 27.79retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1193400541238400541Rat
734767Niddm57Non-insulin dependent diabetes mellitus QTL 57body mass (VT:0001259)body weight (CMO:0000012)1233480549270108840Rat
1358898Bp255Blood pressure QTL 2553.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1200449456256003563Rat
7771612Cm80Cardiac mass QTL 808.4heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)1146080545243492863Rat
631843Bw116Body weight QTL 1164.10.016abdominal adipose amount (VT:1000220)abdominal fat pad weight (CMO:0000088)1233480549270108840Rat
731175Uae20Urinary albumin excretion QTL 203.50.0018urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1207163993269633915Rat
2300175Bmd40Bone mineral density QTL 4015.40.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)1210980612255980612Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1160573753266453731Rat
724538Kidm1Kidney mass QTL 13.2kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1223134011262090599Rat
1358886Bp260Blood pressure QTL 2603.67arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1160574007235238518Rat
2293655Bss36Bone structure and strength QTL 3610.660.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1210980612255980612Rat
1298084Thym4Thymus enlargement QTL 410.68thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1207243873252243873Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1160111426262090599Rat
2314011Gluco56Glucose level QTL 56blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1209203273254203273Rat
8552891Epfw5Epididymal fat weight QTL 54.4epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1202543537247543537Rat
734769Niddm58Non-insulin dependent diabetes mellitus QTL 58body mass (VT:0001259)body weight (CMO:0000012)1225108840270108840Rat
724533Rf51Renal function QTL 515.30.0002kidney plasma flow trait (VT:0005524)renal plasma flow (CMO:0001914)1228180370266453608Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1154961463266453731Rat
1358292Cm37Cardiac mass QTL 376.28e-07heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)1205674651250674651Rat
61376Bp42Blood pressure QTL 4223.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1207243873252243873Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1208479811269633915Rat
70211Niddm24Non-insulin dependent diabetes mellitus QTL 243.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1224633915269633915Rat
724552Glom2Glomerulus QTL 23.30.0001kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)1232312773270518180Rat
1358916Kidm22Kidney mass QTL 223.32kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1212738576257738576Rat
2312564Glom18Glomerulus QTL 182.40.003kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)1194786607262083703Rat
634321Hc1Hypercalciuria QTL 12.91urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1188241285250779312Rat
2292218Kidm35Kidney mass QTL 35kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1208798288253798288Rat
61400Niddm1Non-insulin dependent diabetes mellitus QTL 111blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1228180243255849249Rat
1331790Bp201Blood pressure QTL 2013.127arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1221820316234540296Rat
1300168Bp170Blood pressure QTL 1702.76arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1192995199237995199Rat
61403Niddm4Non-insulin dependent diabetes mellitus QTL 4blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1201464383246464383Rat
1641926Teswt2Testicular weight QTL 22.82testis mass (VT:1000644)both testes wet weight (CMO:0000175)1203675682248675682Rat
631658Cm7Cardiac mass QTL 75.320.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)1205674651250674651Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1160573753266453731Rat
2293700Bmd27Bone mineral density QTL 276.60.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1210980612255980612Rat
2293701Bmd34Bone mineral density QTL 348.30.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)1210980612255980612Rat
7387289Uae45Urinary albumin excretion QTL 452.860.0021urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1233204160270518180Rat
8655855Arrd3Age-related retinal degeneration QTL 33.07lens clarity trait (VT:0001304)cataract incidence/prevalence measurement (CMO:0001585)1193400541238400541Rat
634340Hcar5Hepatocarcinoma resistance QTL 58liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1223964326236074012Rat
1600374Mcs17Mammary carcinoma susceptibility QTL 173mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1207099883252099883Rat
1600363Hc6Hypercalciuria QTL 62.7urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1210980612255980612Rat
8693618Alc25Alcohol consumption QTL 2530.28drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)1217412367238041033Rat
2293083Iddm25Insulin dependent diabetes mellitus QTL 254.18blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1191260175236260175Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1185857683270518180Rat
2302040Pia35Pristane induced arthritis QTL 353.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1226175591270518180Rat
631669Iddm9Insulin dependent diabetes mellitus QTL 92.80.039blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1233349180270518180Rat
7394701Uae46Urinary albumin excretion QTL 463.60.0056urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1210980612255980612Rat
1598821Rf55Renal function QTL 556.3renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1228174566270518180Rat

Markers in Region
D1Rat474  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81233,688,361 - 233,688,780 (+)Marker Load Pipeline
mRatBN7.21224,262,121 - 224,262,540 (+)MAPPERmRatBN7.2
Rnor_6.01244,686,821 - 244,687,239NCBIRnor6.0
Rnor_5.01251,938,326 - 251,938,744UniSTSRnor5.0
RGSC_v3.41230,086,046 - 230,086,464UniSTSRGSC3.4
Celera1221,454,216 - 221,454,634UniSTS
RGSC_v3.11230,250,058 - 230,250,548RGD
FHH x ACI Map1111.18UniSTS
FHH x ACI Map1111.18RGD
Cytogenetic Map1q51UniSTS
AA943436  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,232,526 - 224,232,647 (+)MAPPERmRatBN7.2
Rnor_6.01244,657,228 - 244,657,348NCBIRnor6.0
Rnor_5.01251,908,733 - 251,908,853UniSTSRnor5.0
RGSC_v3.41230,056,453 - 230,056,573UniSTSRGSC3.4
Celera1221,424,623 - 221,424,743UniSTS
RH 3.4 Map11618.11UniSTS
Cytogenetic Map1q51UniSTS
AU048671  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,206,540 - 224,206,807 (+)MAPPERmRatBN7.2
Rnor_6.01244,631,248 - 244,631,514NCBIRnor6.0
Rnor_5.01251,882,753 - 251,883,019UniSTSRnor5.0
RGSC_v3.41230,030,473 - 230,030,739UniSTSRGSC3.4
Celera1221,398,642 - 221,398,908UniSTS
Cytogenetic Map1q51UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001004446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010055135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AY643746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000016740   ⟹   ENSRNOP00000016740
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1233,617,366 - 233,784,863 (+)Ensembl
mRatBN7.2 Ensembl1224,191,184 - 224,358,637 (+)Ensembl
Rnor_6.0 Ensembl1244,630,377 - 244,782,706 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000080124   ⟹   ENSRNOP00000069210
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1233,619,551 - 233,780,814 (+)Ensembl
mRatBN7.2 Ensembl1224,191,125 - 224,354,593 (+)Ensembl
Rnor_6.0 Ensembl1244,615,821 - 244,781,633 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000095776   ⟹   ENSRNOP00000095555
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1233,619,551 - 233,784,869 (+)Ensembl
mRatBN7.2 Ensembl1224,191,184 - 224,358,637 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000097032   ⟹   ENSRNOP00000079036
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1233,755,591 - 233,784,859 (+)Ensembl
mRatBN7.2 Ensembl1224,329,374 - 224,358,684 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000110315   ⟹   ENSRNOP00000080701
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1233,617,430 - 233,784,067 (+)Ensembl
mRatBN7.2 Ensembl1224,191,184 - 224,358,637 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000114205   ⟹   ENSRNOP00000082355
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1233,757,878 - 233,784,859 (+)Ensembl
mRatBN7.2 Ensembl1224,331,655 - 224,358,684 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000116235   ⟹   ENSRNOP00000089540
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1233,756,137 - 233,784,859 (+)Ensembl
mRatBN7.2 Ensembl1224,329,911 - 224,358,684 (+)Ensembl
RefSeq Acc Id: NM_001004446   ⟹   NP_001004446
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,617,371 - 233,784,861 (+)NCBI
mRatBN7.21224,191,125 - 224,358,640 (+)NCBI
Rnor_6.01244,615,832 - 244,783,689 (+)NCBI
Rnor_5.01251,867,320 - 252,035,241 (+)NCBI
RGSC_v3.41230,015,057 - 230,183,451 (+)RGD
Celera1221,383,226 - 221,550,796 (+)RGD
Sequence:
RefSeq Acc Id: XM_063268502   ⟹   XP_063124572
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,619,391 - 233,784,908 (+)NCBI
RefSeq Acc Id: XM_063268505   ⟹   XP_063124575
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,617,352 - 233,784,908 (+)NCBI
RefSeq Acc Id: XM_063268509   ⟹   XP_063124579
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,618,712 - 233,784,908 (+)NCBI
RefSeq Acc Id: XM_063268513   ⟹   XP_063124583
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,617,534 - 233,784,908 (+)NCBI
RefSeq Acc Id: XM_063268522   ⟹   XP_063124592
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,618,170 - 233,784,908 (+)NCBI
RefSeq Acc Id: XM_063268525   ⟹   XP_063124595
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,618,047 - 233,784,908 (+)NCBI
RefSeq Acc Id: XM_063268527   ⟹   XP_063124597
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,619,597 - 233,784,908 (+)NCBI
RefSeq Acc Id: XM_063268529   ⟹   XP_063124599
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,619,161 - 233,784,908 (+)NCBI
RefSeq Acc Id: XM_063268533   ⟹   XP_063124603
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,618,718 - 233,784,908 (+)NCBI
RefSeq Acc Id: XM_063268536   ⟹   XP_063124606
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,617,277 - 233,784,908 (+)NCBI
RefSeq Acc Id: XM_063268545   ⟹   XP_063124615
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,635,353 - 233,784,908 (+)NCBI
RefSeq Acc Id: XM_063268547   ⟹   XP_063124617
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,617,277 - 233,782,647 (+)NCBI
RefSeq Acc Id: XM_063268552   ⟹   XP_063124622
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,617,277 - 233,782,647 (+)NCBI
RefSeq Acc Id: XM_063268556   ⟹   XP_063124626
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,755,584 - 233,784,908 (+)NCBI
RefSeq Acc Id: XM_063268559   ⟹   XP_063124629
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,755,584 - 233,784,908 (+)NCBI
RefSeq Acc Id: XM_063268562   ⟹   XP_063124632
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,755,584 - 233,784,908 (+)NCBI
RefSeq Acc Id: XM_063268564   ⟹   XP_063124634
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,755,580 - 233,784,908 (+)NCBI
RefSeq Acc Id: XR_010055135
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,617,325 - 233,759,169 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001004446 (Get FASTA)   NCBI Sequence Viewer  
  NP_001416062 (Get FASTA)   NCBI Sequence Viewer  
  NP_001416063 (Get FASTA)   NCBI Sequence Viewer  
  NP_001416064 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124572 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124575 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124579 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124583 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124592 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124595 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124597 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124599 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124603 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124606 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124615 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124617 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124622 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124626 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124629 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124632 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124634 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAT67217 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000016740
  ENSRNOP00000016740.3
  ENSRNOP00000069210
  ENSRNOP00000069210.2
  ENSRNOP00000079036
  ENSRNOP00000079036.2
  ENSRNOP00000080701
  ENSRNOP00000080701.2
  ENSRNOP00000082355.1
  ENSRNOP00000089540
  ENSRNOP00000089540.1
  ENSRNOP00000095555
  ENSRNOP00000095555.2
RefSeq Acc Id: NP_001004446   ⟸   NM_001004446
- UniProtKB: E9PTG1 (UniProtKB/TrEMBL),   Q6DUH4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000069210   ⟸   ENSRNOT00000080124
Ensembl Acc Id: ENSRNOP00000016740   ⟸   ENSRNOT00000016740
Ensembl Acc Id: ENSRNOP00000095555   ⟸   ENSRNOT00000095776
Ensembl Acc Id: ENSRNOP00000082355   ⟸   ENSRNOT00000114205
Ensembl Acc Id: ENSRNOP00000080701   ⟸   ENSRNOT00000110315
Ensembl Acc Id: ENSRNOP00000089540   ⟸   ENSRNOT00000116235
Ensembl Acc Id: ENSRNOP00000079036   ⟸   ENSRNOT00000097032
RefSeq Acc Id: XP_063124606   ⟸   XM_063268536
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063124617   ⟸   XM_063268547
- Peptide Label: isoform X4
- UniProtKB: A0A0G2JUS4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124622   ⟸   XM_063268552
- Peptide Label: isoform X5
- UniProtKB: A0A0G2JUS4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124575   ⟸   XM_063268505
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063124583   ⟸   XM_063268513
- Peptide Label: isoform X1
- UniProtKB: E9PTG1 (UniProtKB/TrEMBL),   Q6DUH4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124595   ⟸   XM_063268525
- Peptide Label: isoform X1
- UniProtKB: E9PTG1 (UniProtKB/TrEMBL),   Q6DUH4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124592   ⟸   XM_063268522
- Peptide Label: isoform X1
- UniProtKB: E9PTG1 (UniProtKB/TrEMBL),   Q6DUH4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124579   ⟸   XM_063268509
- Peptide Label: isoform X1
- UniProtKB: E9PTG1 (UniProtKB/TrEMBL),   Q6DUH4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124603   ⟸   XM_063268533
- Peptide Label: isoform X1
- UniProtKB: E9PTG1 (UniProtKB/TrEMBL),   Q6DUH4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124599   ⟸   XM_063268529
- Peptide Label: isoform X1
- UniProtKB: E9PTG1 (UniProtKB/TrEMBL),   Q6DUH4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124572   ⟸   XM_063268502
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063124597   ⟸   XM_063268527
- Peptide Label: isoform X1
- UniProtKB: E9PTG1 (UniProtKB/TrEMBL),   Q6DUH4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124615   ⟸   XM_063268545
- Peptide Label: isoform X3
- UniProtKB: Q6DUH4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124634   ⟸   XM_063268564
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063124626   ⟸   XM_063268556
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063124632   ⟸   XM_063268562
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063124629   ⟸   XM_063268559
- Peptide Label: isoform X6
Protein Domains
Bromo   Helicase ATP-binding   Helicase C-terminal   HSA   QLQ

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9PTG1-F1-model_v2 AlphaFold E9PTG1 1-1597 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690852
Promoter ID:EPDNEW_R1360
Type:initiation region
Name:Smarca2_1
Description:SWI/SNF related, matrix associated, actin dependent regulatorof chromatin, subfamily a, member 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01244,615,891 - 244,615,951EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1302988 AgrOrtholog
BioCyc Gene G2FUF-56050 BioCyc
Ensembl Genes ENSRNOG00000011931 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000016740 ENTREZGENE
  ENSRNOT00000016740.7 UniProtKB/TrEMBL
  ENSRNOT00000080124 ENTREZGENE
  ENSRNOT00000080124.3 UniProtKB/TrEMBL
  ENSRNOT00000095776 ENTREZGENE
  ENSRNOT00000095776.2 UniProtKB/TrEMBL
  ENSRNOT00000097032 ENTREZGENE
  ENSRNOT00000097032.2 UniProtKB/TrEMBL
  ENSRNOT00000110315 ENTREZGENE
  ENSRNOT00000110315.2 UniProtKB/TrEMBL
  ENSRNOT00000114205.2 UniProtKB/TrEMBL
  ENSRNOT00000116235 ENTREZGENE
  ENSRNOT00000116235.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/TrEMBL
  1.20.920.10 UniProtKB/TrEMBL
  3.40.5.120 UniProtKB/TrEMBL
  3.40.50.10810 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro BRK_domain UniProtKB/TrEMBL
  BRK_sf UniProtKB/TrEMBL
  Bromodomain UniProtKB/TrEMBL
  Bromodomain-like_sf UniProtKB/TrEMBL
  Bromodomain_CS UniProtKB/TrEMBL
  DEAD-like_helicase UniProtKB/TrEMBL
  Gln-Leu-Gln_QLQ UniProtKB/TrEMBL
  Helicase/SANT-assoc_DNA-bd UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Rsc/polybromo UniProtKB/TrEMBL
  SnAC UniProtKB/TrEMBL
  SNF2-like_sf UniProtKB/TrEMBL
  SNF2/RAD54-like_C UniProtKB/TrEMBL
  SNF2_N UniProtKB/TrEMBL
KEGG Report rno:361745 UniProtKB/TrEMBL
NCBI Gene 361745 ENTREZGENE
PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASH1L UniProtKB/TrEMBL
  SNF2/RAD54 HELICASE FAMILY UniProtKB/TrEMBL
  SWI/SNF-RELATED UniProtKB/TrEMBL
Pfam BRK UniProtKB/TrEMBL
  Bromodomain UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  HSA UniProtKB/TrEMBL
  QLQ UniProtKB/TrEMBL
  SnAC UniProtKB/TrEMBL
  SNF2_N UniProtKB/TrEMBL
PhenoGen Smarca2 PhenoGen
PRINTS BROMODOMAIN UniProtKB/TrEMBL
PROSITE BROMODOMAIN_1 UniProtKB/TrEMBL
  BROMODOMAIN_2 UniProtKB/TrEMBL
  HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
  HSA UniProtKB/TrEMBL
  QLQ UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011931 RatGTEx
SMART BRK UniProtKB/TrEMBL
  BROMO UniProtKB/TrEMBL
  DEXDc UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
  HSA UniProtKB/TrEMBL
  QLQ UniProtKB/TrEMBL
  SnAC UniProtKB/TrEMBL
Superfamily-SCOP Bromodomain UniProtKB/TrEMBL
  SSF160481 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A0G2JUS4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZML8_RAT UniProtKB/TrEMBL
  A0A8I5ZRE0_RAT UniProtKB/TrEMBL
  A0A8I5ZUT5_RAT UniProtKB/TrEMBL
  A0A8I6A8Z4_RAT UniProtKB/TrEMBL
  A0A8I6ARN7 ENTREZGENE, UniProtKB/TrEMBL
  E9PTG1 ENTREZGENE, UniProtKB/TrEMBL
  Q6DUH4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-11-08 Smarca2  SWI/SNF related BAF chromatin remodeling complex subunit ATPase 2  Smarca2  SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Smarca2  SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2      Symbol and Name status set to approved 1299863 APPROVED
2005-02-14 Smarca2  SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2      Symbol and Name status set to provisional 70820 PROVISIONAL