LOC103690796 (60S ribosomal protein L9-like) - Rat Genome Database

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Gene: LOC103690796 (60S ribosomal protein L9-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC103690796
Name: 60S ribosomal protein L9-like
RGD ID: 9453398
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to be located in cytoplasm and ribosome. Predicted to be part of cytosolic large ribosomal subunit.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L9 pseudogene; large ribosomal subunit protein uL6-like; LOC108353283; LOC314434; RGD1559566; similar to 60S ribosomal protein L9
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X3,939,713 - 3,940,382 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX3,939,685 - 3,940,380 (+)EnsemblGRCr8
mRatBN7.2X1,386,183 - 1,386,826 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX1,386,155 - 1,386,850 (+)EnsemblmRatBN7.2
Rnor_6.0X1,600,799 - 1,601,432 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX1,600,790 - 1,601,395 (+)Ensemblrn6Rnor6.0
Rnor_5.0X2,396,356 - 2,396,937 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X12,791,137 - 12,791,718 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX1,953,690 - 1,954,323 (+)NCBICelera
Cytogenetic MapXq11NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X197044046970440Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
sensory system
visual system
6 1 9 27 39 28 11 5 3 7 7

Sequence


Ensembl Acc Id: ENSRNOT00000072444   ⟹   ENSRNOP00000066866
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX1,600,790 - 1,601,395 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096576   ⟹   ENSRNOP00000092772
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX3,939,685 - 3,940,380 (+)Ensembl
mRatBN7.2 EnsemblX1,386,155 - 1,386,850 (+)Ensembl
RefSeq Acc Id: XM_039100279   ⟹   XP_038956207
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X3,939,713 - 3,940,382 (+)NCBI
mRatBN7.2X1,386,183 - 1,386,826 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038956207 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000092772
  ENSRNOP00000092772.1
Ensembl Acc Id: ENSRNOP00000066866   ⟸   ENSRNOT00000072444
RefSeq Acc Id: XP_038956207   ⟸   XM_039100279
- UniProtKB: A0A8I6AHN0 (UniProtKB/TrEMBL),   Q6P9U5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000092772   ⟸   ENSRNOT00000096576
Protein Domains
Large ribosomal subunit protein uL6 alpha-beta

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0RBD4-F1-model_v2 AlphaFold M0RBD4 1-201 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:9453398 AgrOrtholog
BioCyc Gene G2FUF-3192 BioCyc
Ensembl Genes ENSRNOG00000051858 Ensembl
  ENSRNOG00000065924 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000096576 ENTREZGENE
  ENSRNOT00000096576.2 UniProtKB/TrEMBL
Gene3D-CATH 3.90.930.12 UniProtKB/TrEMBL
InterPro Ribosomal_L6 UniProtKB/TrEMBL
  Ribosomal_L6_a/b-dom UniProtKB/TrEMBL
  Ribosomal_L6_a/b-dom_sf UniProtKB/TrEMBL
  Ribosomal_L6_CS2 UniProtKB/TrEMBL
NCBI Gene LOC103690796 ENTREZGENE
PANTHER LARGE RIBOSOMAL SUBUNIT PROTEIN UL6 UniProtKB/TrEMBL
  PTHR11655 UniProtKB/TrEMBL
Pfam Ribosomal_L6 UniProtKB/TrEMBL
PhenoGen LOC103690796 PhenoGen
PIRSF Ribosomal_L6 UniProtKB/TrEMBL
PROSITE RIBOSOMAL_L6_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000051858 RatGTEx
  ENSRNOG00000065924 RatGTEx
Superfamily-SCOP SSF56053 UniProtKB/TrEMBL
UniProt A0A8I6AHN0 ENTREZGENE, UniProtKB/TrEMBL
  Q6P9U5 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 LOC103690796  60S ribosomal protein L9-like  LOC108353283  60S ribosomal protein L9 pseudogene  Data merged from RGD:11468436 737654 PROVISIONAL
2016-08-02 LOC108353283  60S ribosomal protein L9 pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL
2015-07-29 LOC103690796  60S ribosomal protein L9-like  RGD1559566  similar to 60S ribosomal protein L9  Data merged from RGD:1559566 737654 PROVISIONAL
2014-08-25 LOC103690796  60S ribosomal protein L9-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 RGD1559566  similar to 60S ribosomal protein L9   RGD1559566_predicted  similar to 60S ribosomal protein L9 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1559566_predicted  similar to 60S ribosomal protein L9 (predicted)  LOC314434  similar to 60S ribosomal protein L9  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC314434  similar to 60S ribosomal protein L9      Symbol and Name status set to provisional 70820 PROVISIONAL