Idi2-ps1 (isopentenyl-diphosphate delta isomerase 2, pseudogene 1) - Rat Genome Database

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Gene: Idi2-ps1 (isopentenyl-diphosphate delta isomerase 2, pseudogene 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Idi2-ps1 (Ensembl: LOC103694120)
Name: isopentenyl-diphosphate delta isomerase 2, pseudogene 1 (Ensembl:isopentenyl-diphosphate delta-isomerase 2-like)
RGD ID: 9352023
Description: ENCODES a protein that exhibits isomerase activity (inferred); isopentenyl-diphosphate delta-isomerase activity (inferred); INVOLVED IN cholesterol biosynthetic process (inferred); cholesterol metabolic process (inferred); isoprenoid biosynthetic process (inferred); FOUND IN peroxisome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: isopentenyl-diphosphate delta-isomerase 2-like; LOC103694120; LOC307073; RGD1310647; similar to isopentenyl diphosphate delta-isomerase type 2
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21761,420,357 - 61,423,924 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.01757,814,239 - 57,816,277 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1757,814,539 - 57,816,256 (-)Ensemblrn6Rnor6.0
Rnor_5.01759,623,515 - 59,628,159 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41772,274,978 - 72,288,445 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
RGSC_v3.11772,284,139 - 72,299,278 (+)NCBI
Cytogenetic Map17q12.1NCBI



Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
peroxisome  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:137
Count of miRNA genes:112
Interacting mature miRNAs:127
Transcripts:ENSRNOT00000051570
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 21 53 51 50 19 25 19 6 117 69 33 12 32 31

Sequence


Ensembl Acc Id: ENSRNOT00000051570   ⟹   ENSRNOP00000045142
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1757,814,539 - 57,816,256 (-)Ensembl
RefSeq Acc Id: XM_008771843   ⟹   XP_008770065
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01757,814,239 - 57,816,277 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_063136777 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000102981
  ENSRNOP00000102981.1
RefSeq Acc Id: XP_008770065   ⟸   XM_008771843
- Sequence:
Ensembl Acc Id: ENSRNOP00000045142   ⟸   ENSRNOT00000051570

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AEN4-F1-model_v2 AlphaFold D4AEN4 1-180 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:9352023 AgrOrtholog
BioCyc Gene G2FUF-8892 BioCyc
Ensembl Genes ENSRNOG00000045919 Ensembl
  ENSRNOG00000076944 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000151129 ENTREZGENE
  ENSRNOT00000151129.1 UniProtKB/TrEMBL
NCBI Gene LOC103694120 ENTREZGENE
PhenoGen Idi2-ps1 PhenoGen
RatGTEx ENSRNOG00000045919 RatGTEx
  ENSRNOG00000076944 RatGTEx
UniProt A0ABK0LF56_RAT UniProtKB/TrEMBL
  D4AEN4 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Idi2-ps1  isopentenyl-diphosphate delta isomerase 2, pseudogene 1  LOC103694120  isopentenyl-diphosphate delta-isomerase 2-like  Symbol and Name Changed 1299863 APPROVED
2015-07-29 LOC103694120  isopentenyl-diphosphate delta-isomerase 2-like  RGD1310647  similar to isopentenyl diphosphate delta-isomerase type 2  Data merged from RGD:1310647 737654 PROVISIONAL
2014-08-25 LOC103694120  isopentenyl-diphosphate delta-isomerase 2-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 RGD1310647  similar to isopentenyl diphosphate delta-isomerase type 2   RGD1310647_predicted  similar to isopentenyl diphosphate delta-isomerase type 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1310647_predicted  similar to isopentenyl diphosphate delta-isomerase type 2 (predicted)  LOC307073_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC307073_predicted  similar to isopentenyl diphosphate delta-isomerase type 2 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL