LOC103693700 (60S ribosomal protein L36a-like) - Rat Genome Database

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Gene: LOC103693700 (60S ribosomal protein L36a-like) Rattus norvegicus
Analyze
Symbol: LOC103693700
Name: 60S ribosomal protein L36a-like
RGD ID: 9288957
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: large ribosomal subunit protein eL42-like; LOC501876; RGD1563431; similar to large subunit ribosomal protein L36a
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81396,098,500 - 96,105,721 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.21393,566,842 - 93,574,024 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.013100,456,718 - 100,465,714 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.013106,654,963 - 106,655,310 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41397,841,395 - 97,888,434 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1393,103,994 - 93,111,180 (-)NCBICelera
Cytogenetic Map13q26NCBI
JBrowse:




References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in LOC103693700
65 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
738027Lnnr6Liver neoplastic nodule remodeling QTL 63.3liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)1365613454109350286Rat
7387280Uae43Urinary albumin excretion QTL 435.690.4174urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1368983334109350286Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1367635937109350286Rat
1576318Schws5Schwannoma susceptibility QTL 50.0351nervous system integrity trait (VT:0010566)post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)1364497900109350286Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1338975045103588154Rat
8655951Rf63Renal function QTL 6312.2blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)1371610804109350286Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1383286150109350286Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137298450699745408Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1367635937109350286Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1364375743109350286Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1367635937109350286Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
7 1 16 30 16 1 4 7 14

Sequence


RefSeq Acc Id: XM_039091156   ⟹   XP_038947084
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81396,098,500 - 96,105,721 (-)NCBI
mRatBN7.21393,566,842 - 93,574,024 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038947084 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_038947084   ⟸   XM_039091156


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-17089 BioCyc
NCBI Gene LOC103693700 ENTREZGENE
PhenoGen LOC103693700 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-29 LOC103693700  60S ribosomal protein L36a-like  RGD1563431  similar to large subunit ribosomal protein L36a  Data merged from RGD:1563431 737654 PROVISIONAL
2014-08-25 LOC103693700  60S ribosomal protein L36a-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 RGD1563431  similar to large subunit ribosomal protein L36a   RGD1563431_predicted  similar to large subunit ribosomal protein L36a (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1563431_predicted  similar to large subunit ribosomal protein L36a (predicted)  LOC501876  similar to large subunit ribosomal protein L36a  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC501876  similar to large subunit ribosomal protein L36a      Symbol and Name status set to provisional 70820 PROVISIONAL