Rpl13l1 (ribosomal protein L13 like 1) - Rat Genome Database

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Gene: Rpl13l1 (ribosomal protein L13 like 1) Rattus norvegicus
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Symbol: Rpl13l1
Name: ribosomal protein L13 like 1
RGD ID: 9200139
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN translation (inferred); FOUND IN ribonucleoprotein complex (inferred); ribosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L13 pseudogene; 60S ribosomal protein L13-like; large ribosomal subunit protein eL13-like; LOC100909502; LOC102551057; LOC103690331; LOC294344; RGD1563194; similar to ribosomal protein L13
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82012,646,234 - 12,650,359 (+)NCBIGRCr8GRCr8GRCr8
mRatBN7.22012,648,365 - 12,652,576 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.02013,587,910 - 13,589,372 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02015,743,976 - 15,744,677 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42013,047,856 - 13,048,557 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2014,140,006 - 14,141,468 (+)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Rpl13l1
65 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20126925056Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126128279Rat
4889870Pur30Proteinuria QTL 30190.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20804392029865039Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124164241Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129193376Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20127341128Rat
1598870Bp289Blood pressure QTL 2892.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)20821635953216359Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129193376Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129193376Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129193376Rat
1581577Pur15Proteinuria QTL 154.380.0002urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)20804392015089182Rat
1598858Cm61Cardiac mass QTL 613.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)20821635953216359Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129193376Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20114100378Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)201224324249189476Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
1 1 12 16 16 60 35 8 18 24 28 9 9

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_039099291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_039099291   ⟹   XP_038955219
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82012,646,234 - 12,650,359 (+)NCBI
mRatBN7.22012,648,365 - 12,652,576 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038955219 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000099606
  ENSRNOP00000099606.1
RefSeq Acc Id: XP_038955219   ⟸   XM_039099291

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-4174 BioCyc
Ensembl Genes ENSRNOG00000083002 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000127780 ENTREZGENE
  ENSRNOT00000127780.1 UniProtKB/TrEMBL
NCBI Gene LOC103690331 ENTREZGENE
PhenoGen Rpl13l1 PhenoGen
RatGTEx ENSRNOG00000083002 RatGTEx
UniProt A0ABK0LFK0_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Rpl13l1  ribosomal protein L13 like 1  LOC103690331  60S ribosomal protein L13 pseudogene  Symbol and Name Changed 1299863 APPROVED
2021-03-09 LOC103690331  60S ribosomal protein L13 pseudogene  LOC102551057  60S ribosomal protein L13-like  Data merged from RGD:7661811 737654 PROVISIONAL
2015-07-29 LOC103690331  60S ribosomal protein L13 pseudogene  LOC100909502  60S ribosomal protein L13-like  Data merged from RGD:6503304 737654 PROVISIONAL
2015-07-29 LOC103690331  60S ribosomal protein L13 pseudogene  RGD1563194  similar to ribosomal protein L13  Data merged from RGD:1563194 737654 PROVISIONAL
2014-08-25 LOC103690331  60S ribosomal protein L13 pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-12-18 LOC102551057  60S ribosomal protein L13-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2012-07-05 LOC100909502  60S ribosomal protein L13-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 RGD1563194  similar to ribosomal protein L13   RGD1563194_predicted  similar to ribosomal protein L13 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1563194_predicted  similar to ribosomal protein L13 (predicted)  LOC294344  similar to ribosomal protein L13  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC294344  similar to ribosomal protein L13      Symbol and Name status set to provisional 70820 PROVISIONAL