Rpl9l2 (ribosomal protein L9 like 2) - Rat Genome Database

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Gene: Rpl9l2 (ribosomal protein L9 like 2) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rpl9l2
Name: ribosomal protein L9 like 2
RGD ID: 9187595
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to be located in cytoplasm and ribosome. Predicted to be part of cytosolic large ribosomal subunit.
Type: protein-coding (Ensembl: pseudogene)
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L9 pseudogene; 60S ribosomal protein L9-like; large ribosomal subunit protein uL6-like; LOC100362211; LOC103692829; ribosomal protein L9-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8725,680,263 - 25,680,982 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl725,680,278 - 25,680,948 (-)EnsemblGRCr8
mRatBN7.2723,792,917 - 23,793,629 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl723,793,011 - 23,793,619 (-)EnsemblmRatBN7.2
Rnor_6.0729,948,928 - 29,949,628 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl729,949,037 - 29,949,603 (-)Ensemblrn6Rnor6.0
Rnor_5.0730,050,568 - 30,051,134 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4726,136,647 - 26,137,225 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera720,939,649 - 20,940,349 (-)NCBICelera
Cytogenetic Map7q13NCBI
JBrowse:




References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

Variants

.
Variants in Rpl9l2
4 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)72154197751639954Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72380760668807606Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7721609752216097Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)71051708662346019Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7170952746709527Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72417947886817926Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)71011291660150541Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7946087754460877Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7129716167Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)72154197751639954Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134650782Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)72154197735707405Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7132612984Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7166965846669658Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)7131777942Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7132612984Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)72154197786817926Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)71049882055498820Rat
61369Mcs2Mammary carcinoma susceptibility QTL 23.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72092049437412865Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71746044762460447Rat
70207Niddm31Non-insulin dependent diabetes mellitus QTL 313.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)72005723265057232Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
14 2 15 56 39 36 16 45 16 6 140 85 10 41 25 24 20 9 9

Sequence


Ensembl Acc Id: ENSRNOT00000009419   ⟹   ENSRNOP00000070224
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl725,680,278 - 25,680,948 (-)Ensembl
mRatBN7.2 Ensembl723,793,011 - 23,793,619 (-)Ensembl
Rnor_6.0 Ensembl729,949,037 - 29,949,603 (-)Ensembl
RefSeq Acc Id: XM_039080080   ⟹   XP_038936008
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8725,680,263 - 25,680,982 (-)NCBI
mRatBN7.2723,792,917 - 23,793,629 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038936008 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Acc Id: ENSRNOP00000070224   ⟸   ENSRNOT00000009419
RefSeq Acc Id: XP_038936008   ⟸   XM_039080080
- UniProtKB: A0A0G2JXD0 (UniProtKB/TrEMBL),   A6IFQ8 (UniProtKB/TrEMBL),   Q6P9U5 (UniProtKB/TrEMBL)
Protein Domains
Large ribosomal subunit protein uL6 alpha-beta

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JXD0-F1-model_v2 AlphaFold A0A0G2JXD0 1-188 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695143
Promoter ID:EPDNEW_R5659
Type:multiple initiation site
Name:LOC103692829_1
Description:60S ribosomal protein L9 pseudogene
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0729,949,629 - 29,949,689EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:9187595 AgrOrtholog
BioCyc Gene G2FUF-34494 BioCyc
Ensembl Genes ENSRNOG00000061320 Ensembl
Gene3D-CATH 3.90.930.12 UniProtKB/TrEMBL
InterPro Ribosomal_L6 UniProtKB/TrEMBL
  Ribosomal_L6_a/b-dom UniProtKB/TrEMBL
  Ribosomal_L6_a/b-dom_sf UniProtKB/TrEMBL
  Ribosomal_L6_CS2 UniProtKB/TrEMBL
NCBI Gene LOC103692829 ENTREZGENE
PANTHER LARGE RIBOSOMAL SUBUNIT PROTEIN UL6 UniProtKB/TrEMBL
  PTHR11655 UniProtKB/TrEMBL
Pfam Ribosomal_L6 UniProtKB/TrEMBL
PhenoGen Rpl9l2 PhenoGen
PIRSF Ribosomal_L6 UniProtKB/TrEMBL
PROSITE RIBOSOMAL_L6_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000061320 RatGTEx
Superfamily-SCOP SSF56053 UniProtKB/TrEMBL
UniProt A0A0G2JXD0 ENTREZGENE
  A6IFQ8 ENTREZGENE, UniProtKB/TrEMBL
  Q6P9U5 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Rpl9l2  ribosomal protein L9 like 2  LOC103692829  60S ribosomal protein L9 pseudogene  Symbol and Name Changed 1299863 APPROVED
2015-08-13 LOC103692829  60S ribosomal protein L9 pseudogene  LOC100362211  ribosomal protein L9-like  Data merged from RGD:2318574 737654 PROVISIONAL
2014-08-25 LOC103692829  60S ribosomal protein L9 pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-05-05 LOC100362211  ribosomal protein L9-like      Symbol and Name status set to provisional 70820 PROVISIONAL