Rbmy1j (RNA binding motif protein, Y-linked, family 1, member J) - Rat Genome Database

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Gene: Rbmy1j (RNA binding motif protein, Y-linked, family 1, member J) Rattus norvegicus
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Symbol: Rbmy1j
Name: RNA binding motif protein, Y-linked, family 1, member J
RGD ID: 9125062
Description: Predicted to enable identical protein binding activity and mRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in nucleolus and nucleoplasm. Predicted to be part of spliceosomal complex. Orthologous to several human genes including RBMY1J (RNA binding motif protein Y-linked family 1 member J); INTERACTS WITH benzo[a]pyrene (ortholog); temozolomide (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC103694544; RBMY; RNA binding motif protein Y-linked; RNA binding motif protein, Y-linked; RNA-binding motif protein, Y chromosome, family 1 member B; RNA-binding motif protein, Y chromosome, family 1 member B-like
RGD Orthologs
Human
Mouse
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8Y438,897 - 449,195 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblY438,897 - 449,195 (+)EnsemblGRCr8
mRatBN7.2Y415,160 - 425,460 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblY415,178 - 425,426 (+)EnsemblmRatBN7.2
Rnor_6.0Y380,337 - 390,669 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblY380,382 - 390,667 (+)Ensemblrn6Rnor6.0
Cytogenetic MapYq11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:24759410   PMID:25416956  


Genomics

Comparative Map Data
Rbmy1j
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8Y438,897 - 449,195 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblY438,897 - 449,195 (+)EnsemblGRCr8
mRatBN7.2Y415,160 - 425,460 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblY415,178 - 425,426 (+)EnsemblmRatBN7.2
Rnor_6.0Y380,337 - 390,669 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblY380,382 - 390,667 (+)Ensemblrn6Rnor6.0
Cytogenetic MapYq11NCBI
RBMY1J
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38Y22,403,410 - 22,424,870 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblY22,403,410 - 22,417,881 (+)Ensemblhg38GRCh38
GRCh38.p14 EnsemblY22,168,542 - 22,182,982 (-)Ensemblhg38GRCh38
GRCh37Y24,549,557 - 24,564,028 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36Y22,959,011 - 22,973,416 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34Y22,887,747 - 22,902,153NCBI
CeleraY8,917,868 - 8,932,267 (-)NCBICelera
Cytogenetic MapYq11.223NCBI
HuRefY17,710,494 - 17,726,230 (+)NCBIHuRef
T2T-CHM13v2.0Y22,997,071 - 23,018,537 (-)NCBIT2T-CHM13v2.0
Rbmyf2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39Y2,862,139 - 2,873,496 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblY2,830,699 - 2,873,492 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38Y2,862,139 - 2,873,496 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblY2,830,699 - 2,873,492 (+)Ensemblmm10GRCm38
MGSCv37Y2,118,066 - 2,129,203 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36Y2,118,049 - 2,129,406 (+)NCBIMGSCv36mm8
Cytogenetic MapYpterNCBI
LOC110257929
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1Y41,171,519 - 41,182,903 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1

Variants

.
Variants in Rbmy1j
36 total Variants

Expression

RNA-SEQ Expression

appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
2 2 15 2 3 1 2 1 14 5 14 6 37 2

Sequence


Ensembl Acc Id: ENSRNOT00000092110   ⟹   ENSRNOP00000074643
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblY438,897 - 449,195 (+)Ensembl
mRatBN7.2 EnsemblY415,178 - 425,426 (+)Ensembl
Rnor_6.0 EnsemblY380,382 - 390,667 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000164414   ⟹   ENSRNOP00000106300
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblY438,897 - 449,195 (+)Ensembl
RefSeq Acc Id: NM_001408913   ⟹   NP_001395842
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8Y438,897 - 449,195 (+)NCBI
mRatBN7.2Y415,160 - 425,460 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001395842 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AEP25787 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000074643
  ENSRNOP00000074643.1
  ENSRNOP00000106300.1
GenBank Protein JAC06677 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Acc Id: ENSRNOP00000074643   ⟸   ENSRNOT00000092110
RefSeq Acc Id: NP_001395842   ⟸   NM_001408913
- UniProtKB: W8CC80 (UniProtKB/TrEMBL),   G4XKZ1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000106300   ⟸   ENSRNOT00000164414
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-W8CC80-F1-model_v2 AlphaFold W8CC80 1-388 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:9125062 AgrOrtholog
BioCyc Gene G2FUF-595 BioCyc
Ensembl Genes ENSRNOG00000060963 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000092110 ENTREZGENE
  ENSRNOT00000092110.4 UniProtKB/TrEMBL
  ENSRNOT00000164414.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RBM UniProtKB/TrEMBL
  RBM1CTR UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
NCBI Gene LOC103694544 ENTREZGENE
PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED UniProtKB/TrEMBL
Pfam RBM1CTR UniProtKB/TrEMBL
  RRM_1 UniProtKB/TrEMBL
PhenoGen Rbmy1j PhenoGen
PROSITE RRM UniProtKB/TrEMBL
RatGTEx ENSRNOG00000060963 RatGTEx
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0ABK0LKN9_RAT UniProtKB/TrEMBL
  G4XKZ1 ENTREZGENE, UniProtKB/TrEMBL
  W8CC80 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-06-08 Rbmy1j  RNA binding motif protein, Y-linked, family 1, member J  LOC103694544  RNA-binding motif protein, Y chromosome, family 1 member B-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-08-25 LOC103694544  RNA-binding motif protein, Y chromosome, family 1 member B-like      Symbol and Name status set to provisional 70820 PROVISIONAL