Rpl27al9 (ribosomal protein L27A like 9) - Rat Genome Database

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Gene: Rpl27al9 (ribosomal protein L27A like 9) Rattus norvegicus
Analyze
Symbol: Rpl27al9
Name: ribosomal protein L27A like 9
RGD ID: 9112006
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L27a pseudogene; 60S ribosomal protein L27a-like; large ribosomal subunit protein uL15-like; LOC103690495
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr898,843,631 - 8,844,697 (+)NCBIGRCr8GRCr8GRCr8
mRatBN7.298,516,429 - 8,517,495 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.096,173,352 - 6,279,299 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Celera94,339,109 - 4,340,175 (+)NCBICelera
Cytogenetic Map9q11NCBI
JBrowse:




References

Genomics

Variants

.
Variants in Rpl27al9
11 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)9671488884474983Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9534647950346479Rat
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9121707400Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9875049253750492Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)9131250552Rat
1578675Bss17Bone structure and strength QTL 173.8femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)9360535521031556Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)949664545496645Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9621499551214995Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9875049253750492Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9141763315Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9534647950416711Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9671488829567695Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)949664545496645Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)949664545496645Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9621499551214995Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
sensory system
visual system
6 5 19 26 19 13 1 2 2 2

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_039084958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_039084958   ⟹   XP_038940886
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr898,843,631 - 8,844,697 (+)NCBI
mRatBN7.298,516,429 - 8,517,495 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038940886 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_038940886   ⟸   XM_039084958


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-28375 BioCyc
NCBI Gene LOC103690495 ENTREZGENE
PhenoGen Rpl27al9 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-10-13 Rpl27al9  ribosomal protein L27A like 9  Rpl27al2  ribosomal protein L27a like 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2023-09-19 Rpl27al2  ribosomal protein L27a like 2  LOC103690495  60S ribosomal protein L27a pseudogene  Symbol and Name Changed 1299863 APPROVED
2014-08-25 LOC103690495  60S ribosomal protein L27a pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL