LOC103690878 (syntaxin-3-like) - Rat Genome Database

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Gene: LOC103690878 (syntaxin-3-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC103690878
Name: syntaxin-3-like
RGD ID: 9098358
Description: Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in several processes, including intracellular protein transport; vesicle docking; and vesicle fusion. Predicted to be part of SNARE complex. Predicted to be active in endomembrane system and plasma membrane.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC302365; RGD1564704; similar to syntaxin 3A
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X77,770,801 - 77,771,694 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.2X73,695,215 - 73,696,108 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX73,695,215 - 73,696,108 (-)EnsemblmRatBN7.2
Rnor_6.0X79,742,224 - 79,743,117 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX79,742,224 - 79,743,117 (-)Ensemblrn6Rnor6.0
RGSC_v3.4X96,922,170 - 96,923,063 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX74,973,921 - 74,974,814 (-)NCBICelera
Cytogenetic MapXq22NCBI
JBrowse:




References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in LOC103690878
6 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:10
Count of miRNA genes:10
Interacting mature miRNAs:10
Transcripts:ENSRNOT00000044808
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX45182909117740458Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X4493088389930883Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
reproductive system
respiratory system
16 14 17 61 67 54 4 50 5 89 23 1 9 25 17

Sequence


Ensembl Acc Id: ENSRNOT00000044808   ⟹   ENSRNOP00000051292
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX73,695,215 - 73,696,108 (-)Ensembl
Rnor_6.0 EnsemblX79,742,224 - 79,743,117 (-)Ensembl
RefSeq Acc Id: XM_008773369   ⟹   XP_008771591
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X77,770,801 - 77,771,694 (-)NCBI
mRatBN7.2X73,695,215 - 73,696,108 (-)NCBI
Rnor_6.0X79,742,224 - 79,743,117 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008771591 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_008771591   ⟸   XM_008773369
- UniProtKB: D3ZUH2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000051292   ⟸   ENSRNOT00000044808

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZUH2-F1-model_v2 AlphaFold D3ZUH2 1-297 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:9098358 AgrOrtholog
BioCyc Gene G2FUF-1881 BioCyc
Ensembl Genes ENSRNOG00000031283 Ensembl
NCBI Gene LOC103690878 ENTREZGENE
PhenoGen LOC103690878 PhenoGen
RatGTEx ENSRNOG00000031283 RatGTEx
UniProt D3ZUH2 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-29 LOC103690878  syntaxin-3-like  RGD1564704  similar to syntaxin 3A  Data merged from RGD:1564704 737654 PROVISIONAL
2014-08-25 LOC103690878  syntaxin-3-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 RGD1564704  similar to syntaxin 3A   RGD1564704_predicted  similar to syntaxin 3A (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1564704_predicted  similar to syntaxin 3A (predicted)  LOC302365  similar to syntaxin 3A  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC302365  similar to syntaxin 3A      Symbol and Name status set to provisional 70820 PROVISIONAL