Rpl35al4 (ribosomal protein L35A like 4) - Rat Genome Database

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Gene: Rpl35al4 (ribosomal protein L35A like 4) Rattus norvegicus
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Symbol: Rpl35al4
Name: ribosomal protein L35A like 4
RGD ID: 9094000
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L35a pseudogene; 60S ribosomal protein L35a-like; large ribosomal subunit protein eL33-like; LOC103690851
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X70,846,049 - 70,847,062 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.2X66,806,626 - 66,807,086 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0X71,576,281 - 71,576,659 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
CeleraX67,161,946 - 67,162,324 (-)NCBICelera
Cytogenetic MapXq22NCBI
JBrowse:




References

Genomics

Variants

.
Variants in Rpl35al4
4 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX45182909117740458Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X4493088389930883Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
sensory system
visual system
6 9 34 55 88 64 42 18 26 14 14

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_039100408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_039100408   ⟹   XP_038956336
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X70,846,049 - 70,847,062 (-)NCBI
mRatBN7.2X66,806,626 - 66,807,086 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038956336 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_038956336   ⟸   XM_039100408
- UniProtKB: A6KB05 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-2091 BioCyc
Gene3D-CATH translation elongation factor selb, chain A, domain 4 UniProtKB/TrEMBL
InterPro L35A_sf UniProtKB/TrEMBL
  Ribosomal_L35A UniProtKB/TrEMBL
  Transl_B-barrel_sf UniProtKB/TrEMBL
NCBI Gene LOC103690851 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L35A UniProtKB/TrEMBL
Pfam Ribosomal_L35Ae UniProtKB/TrEMBL
PhenoGen Rpl35al4 PhenoGen
Superfamily-SCOP Translation proteins UniProtKB/TrEMBL
UniProt A6KB05 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Rpl35al4  ribosomal protein L35A like 4  LOC103690851  60S ribosomal protein L35a pseudogene  Symbol and Name Changed 1299863 APPROVED
2014-08-25 LOC103690851  60S ribosomal protein L35a pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL