LOC102548369 (40S ribosomal protein S16-like) - Rat Genome Database

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Gene: LOC102548369 (40S ribosomal protein S16-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC102548369 (Ensembl: AABR07019341.1)
Name: 40S ribosomal protein S16-like
RGD ID: 7517571
Description: Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in cytosolic ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS16 (ribosomal protein S16).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC691983; similar to 40S ribosomal protein S16; small ribosomal subunit protein uS9-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81598,666,920 - 98,667,428 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1598,666,973 - 98,667,413 (-)EnsemblGRCr8
mRatBN7.21592,259,763 - 92,260,218 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1592,259,763 - 92,260,203 (-)EnsemblmRatBN7.2
Rnor_6.015100,303,331 - 100,303,838 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.015103,760,163 - 103,760,647 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41599,937,431 - 99,937,988 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1591,124,175 - 91,124,681 (-)NCBICelera
Cytogenetic Map15q23NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in LOC102548369
3 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1544806773104695021Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)1560213984105213984Rat
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1582194914108192169Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1574735564106469153Rat
1300118Bp190Blood pressure QTL 1902.94arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)1588677086104695021Rat
1358354Srcrt5Stress Responsive Cort QTL 53.38blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1582503470108192169Rat
70182BpQTLcluster12Blood pressure QTL cluster 123.53arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)1572716871101425383Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1582714037106778197Rat
1300120Kidm7Kidney mass QTL 73.55kidney mass (VT:0002707)left kidney wet weight to body weight ratio (CMO:0001954)1588677086104695021Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1525285835104695021Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1564571127108192169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1525285835104695021Rat
7411646Foco21Food consumption QTL 2123.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)1584278281108192169Rat
631516Gluco31Glucose level QTL 317blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1572716871101425383Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)1561710951106710951Rat
1581519Cm59Cardiac mass QTL 592.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)1595260808102247606Rat
1331724Bp223Blood pressure QTL 2233.53715arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1575928947101425383Rat
1641889Colcr6Colorectal carcinoma resistance QTL 62.90.0126intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)1583700787108192169Rat
2317050Aia24Adjuvant induced arthritis QTL 242.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1559257087104257087Rat
2313080Bss65Bone structure and strength QTL 653.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)1567399137108192169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1525285835104695021Rat
2317055Aia10Adjuvant induced arthritis QTL 103.41joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1582194914108192169Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
12 1 7 43 24 22 11 44 11 6 113 61 2 40 29 39 11 9 9

Sequence


Ensembl Acc Id: ENSRNOT00000041344   ⟹   ENSRNOP00000065877
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1598,666,973 - 98,667,413 (-)Ensembl
mRatBN7.2 Ensembl1592,259,763 - 92,260,203 (-)Ensembl
Rnor_6.0 Ensembl15100,303,346 - 100,303,807 (-)Ensembl
RefSeq Acc Id: XM_039094078   ⟹   XP_038950006
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81598,666,920 - 98,667,428 (-)NCBI
mRatBN7.21592,259,763 - 92,260,218 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038950006 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000065877
  ENSRNOP00000065877.2
RefSeq Acc Id: XP_038950006   ⟸   XM_039094078
- UniProtKB: M0R8S7 (UniProtKB/TrEMBL),   Q5XFV9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000065877   ⟸   ENSRNOT00000041344

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R8S7-F1-model_v2 AlphaFold M0R8S7 1-153 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:7517571 AgrOrtholog
BioCyc Gene G2FUF-12478 BioCyc
Ensembl Genes ENSRNOG00000031960 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000041344 ENTREZGENE
  ENSRNOT00000041344.6 UniProtKB/TrEMBL
Gene3D-CATH 3.30.230.10 UniProtKB/TrEMBL
InterPro Ribosomal_S5_D2-typ_fold UniProtKB/TrEMBL
  Ribosomal_S5_D2-typ_fold_subgr UniProtKB/TrEMBL
  Ribosomal_S9 UniProtKB/TrEMBL
  Ribosomal_S9_CS UniProtKB/TrEMBL
NCBI Gene LOC102548369 ENTREZGENE
PANTHER PTHR21569 UniProtKB/TrEMBL
  RIBOSOMAL PROTEIN S16 UniProtKB/TrEMBL
  SMALL RIBOSOMAL SUBUNIT PROTEIN US9 UniProtKB/TrEMBL
Pfam Ribosomal_S9 UniProtKB/TrEMBL
PhenoGen LOC102548369 PhenoGen
PROSITE RIBOSOMAL_S9 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000031960 RatGTEx
Superfamily-SCOP SSF54211 UniProtKB/TrEMBL
UniProt M0R8S7 ENTREZGENE, UniProtKB/TrEMBL
  Q5XFV9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-29 LOC102548369  40S ribosomal protein S16-like  LOC691983  similar to 40S ribosomal protein S16  Data merged from RGD:1593309 737654 PROVISIONAL
2013-12-17 LOC102548369  40S ribosomal protein S16-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-01-09 LOC691983  similar to 40S ribosomal protein S16  LOC686806  similar to 40S ribosomal protein S16  Data merged from RGD:1592542 1643240 APPROVED
2006-11-20 LOC691983  similar to 40S ribosomal protein S16      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC686806  similar to 40S ribosomal protein S16      Symbol and Name status set to provisional 70820 PROVISIONAL