LOC102551819 (U3 small nucleolar RNA-associated protein 14 homolog B-like) - Rat Genome Database

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Gene: LOC102551819 (U3 small nucleolar RNA-associated protein 14 homolog B-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC102551819
Name: U3 small nucleolar RNA-associated protein 14 homolog B-like
RGD ID: 7514331
Description: Predicted to be involved in rRNA processing. Predicted to be located in nucleus. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Orthologous to human UTP14A (UTP14A small subunit processome component).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: U3 small nucleolar RNA-associated protein 14 homolog B
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8987,569,060 - 87,577,603 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl987,563,566 - 87,589,432 (+)EnsemblGRCr8
mRatBN7.2980,120,622 - 80,129,166 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl980,115,077 - 80,129,504 (+)EnsemblmRatBN7.2
Rnor_6.0984,549,610 - 84,554,263 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl984,550,603 - 84,552,964 (+)Ensemblrn6Rnor6.0
Rnor_5.0984,307,300 - 84,311,894 (+)NCBIRnor_5.0Rnor_5.0rn5
Celera977,627,431 - 77,632,374 (+)NCBICelera
Cytogenetic Map9q34NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleolus  (IBA,IEA)
small-subunit processome  (IBA,IEA)

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in LOC102551819
26 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:133
Count of miRNA genes:111
Interacting mature miRNAs:118
Transcripts:ENSRNOT00000006672
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)956047863101047863Rat
1582203Gluco19Glucose level QTL 193.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)963376862108376862Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94445825699506504Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)965657365108376720Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)986720043110356905Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)986720043121768150Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)964220169109220169Rat
6903941Pur31Proteinuria QTL 310.036urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)98672213292642305Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)964220169109220169Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)964220169109220169Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)968875497121768150Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)983161999118999486Rat
4889852Pur26Proteinuria QTL 26150.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)985262459109044727Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)985262459118999486Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)948718864108376862Rat
4889943Bss90Bone structure and strength QTL 904.1tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)95450650499506504Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)964220169109220169Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 11 67 165 91 90 59 90 59 6 353 189 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000006672
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl984,550,603 - 84,552,964 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000104667   ⟹   ENSRNOP00000084067
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl987,563,566 - 87,589,432 (+)Ensembl
mRatBN7.2 Ensembl980,115,077 - 80,129,504 (+)Ensembl
RefSeq Acc Id: XM_039084660   ⟹   XP_038940588
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8987,569,060 - 87,577,603 (+)NCBI
mRatBN7.2980,120,622 - 80,129,166 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001420340 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940588 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000084067
  ENSRNOP00000084067.1
RefSeq Acc Id: XP_038940588   ⟸   XM_039084660
Ensembl Acc Id: ENSRNOP00000084067   ⟸   ENSRNOT00000104667

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:7514331 AgrOrtholog
BioCyc Gene G2FUF-27022 BioCyc
Ensembl Genes ENSRNOG00000025970 Ensembl
  ENSRNOG00000063437 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000104667 ENTREZGENE
  ENSRNOT00000104667.2 UniProtKB/TrEMBL
InterPro SSU_processome_Utp14 UniProtKB/TrEMBL
NCBI Gene LOC102551819 ENTREZGENE
PANTHER PTHR14150 UniProtKB/TrEMBL
  U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 14 HOMOLOG B UniProtKB/TrEMBL
Pfam Utp14 UniProtKB/TrEMBL
PhenoGen LOC102551819 PhenoGen
RatGTEx ENSRNOG00000025970 RatGTEx
  ENSRNOG00000063437 RatGTEx
UniProt A0A8I6A0H2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-17 LOC102551819  U3 small nucleolar RNA-associated protein 14 homolog B-like      Symbol and Name status set to provisional 70820 PROVISIONAL