LOC102551431 (profilin-2-like) - Rat Genome Database

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Gene: LOC102551431 (profilin-2-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC102551431
Name: profilin-2-like
RGD ID: 7509912
Description: Predicted to enable actin binding activity. Predicted to be involved in positive regulation of actin filament bundle assembly and regulation of actin filament polymerization. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC683685; similar to profilin 2
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X64,487,973 - 64,488,365 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX64,487,904 - 64,488,365 (+)EnsemblGRCr8
mRatBN7.2X60,478,445 - 60,478,837 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX60,478,376 - 60,478,837 (+)EnsemblmRatBN7.2
Rnor_6.0X67,294,395 - 67,294,787 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X68,112,636 - 68,113,332 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X83,168,230 - 83,168,722 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX60,896,596 - 60,897,057 (+)NCBICelera
Cytogenetic MapXq22NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)
cytoskeleton  (IEA)

Molecular Function
actin binding  (IBA,IEA)

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline

Genomics


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX45182909117740458Rat
70221Bp56Blood pressure QTL 564.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X6103585667175160Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X4493088389930883Rat


Expression

RNA-SEQ Expression

ectoderm
nervous system
sensory system
visual system
1 1 1 1

Sequence


Ensembl Acc Id: ENSRNOT00000105079   ⟹   ENSRNOP00000085054
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX64,487,904 - 64,488,365 (+)Ensembl
mRatBN7.2 EnsemblX60,478,376 - 60,478,837 (+)Ensembl
RefSeq Acc Id: XM_006257108   ⟹   XP_006257170
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X64,487,973 - 64,488,365 (+)NCBI
mRatBN7.2X60,478,445 - 60,478,837 (+)NCBI
Rnor_6.0X67,294,395 - 67,294,787 (+)NCBI
Rnor_5.0X68,112,636 - 68,113,332 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_006257170 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000085054
  ENSRNOP00000085054.1
RefSeq Acc Id: XP_006257170   ⟸   XM_006257108
- UniProtKB: A0A8I6A2G6 (UniProtKB/TrEMBL),   A6IQ28 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000085054   ⟸   ENSRNOT00000105079

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:7509912 AgrOrtholog
BioCyc Gene G2FUF-2206 BioCyc
Ensembl Genes ENSRNOG00000066828 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000105079 ENTREZGENE
  ENSRNOT00000105079.2 UniProtKB/TrEMBL
Gene3D-CATH Dynein light chain 2a, cytoplasmic UniProtKB/TrEMBL
InterPro PFN UniProtKB/TrEMBL
  PFN UniProtKB/TrEMBL
  PFN_sf UniProtKB/TrEMBL
  Profilin1/2/3_vertebrate UniProtKB/TrEMBL
NCBI Gene LOC102551431 ENTREZGENE
PANTHER PROFILIN UniProtKB/TrEMBL
  PROFILIN UniProtKB/TrEMBL
Pfam Profilin UniProtKB/TrEMBL
PhenoGen LOC102551431 PhenoGen
PRINTS PROFILINMAML UniProtKB/TrEMBL
RatGTEx ENSRNOG00000066828 RatGTEx
SMART PROF UniProtKB/TrEMBL
Superfamily-SCOP SSF55770 UniProtKB/TrEMBL
UniProt A0A8I6A2G6 ENTREZGENE, UniProtKB/TrEMBL
  A6IQ28 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-13 LOC102551431  profilin-2-like  LOC683685  similar to profilin 2  Data merged from RGD:1584468 737654 PROVISIONAL
2013-12-17 LOC102551431  profilin-2-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC683685  similar to profilin 2      Symbol and Name status set to provisional 70820 PROVISIONAL