Mir103a2 (microRNA 103a-2) - Rat Genome Database

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Gene: Mir103a2 (microRNA 103a-2) Rattus norvegicus
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Symbol: Mir103a2
Name: microRNA 103a-2
RGD ID: 7489028
Description: Predicted to enable mRNA 3'-UTR binding activity and mRNA base-pairing post-transcriptional repressor activity. Predicted to be involved in miRNA-mediated gene silencing by inhibition of translation. Predicted to act upstream of or within several processes, including cellular response to cytokine stimulus; positive regulation of adipose tissue development; and positive regulation of transcription by RNA polymerase II. Predicted to be part of RISC complex. Orthologous to human MIR103A2 (microRNA 103a-2); INTERACTS WITH atrazine; bisphenol A; paracetamol.
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: microRNA 103-2; Mir103-2; rno-mir-103-2
RGD Orthologs
Human
Mouse
Dog
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83138,963,227 - 138,963,312 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3138,963,227 - 138,963,312 (+)EnsemblGRCr8
mRatBN7.23118,510,194 - 118,510,279 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3118,510,194 - 118,510,279 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3122,404,503 - 122,404,588 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03131,003,723 - 131,003,808 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03128,660,610 - 128,660,695 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03123,833,671 - 123,833,756 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3123,833,671 - 123,833,756 (+)Ensemblrn6Rnor6.0
Celera3117,318,107 - 117,318,192 (+)NCBICelera
Cytogenetic Map3q36NCBI
JBrowse:




References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14691248   PMID:16381832   PMID:16766679   PMID:17604727   PMID:19188425   PMID:20223197   PMID:20403161   PMID:20439489   PMID:20548288   PMID:24205035   PMID:26038570   PMID:26164754  
PMID:31650542   PMID:33583602   PMID:34888746   PMID:34923106   PMID:35617312   PMID:39051077  


Genomics

Comparative Map Data
Mir103a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83138,963,227 - 138,963,312 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3138,963,227 - 138,963,312 (+)EnsemblGRCr8
mRatBN7.23118,510,194 - 118,510,279 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3118,510,194 - 118,510,279 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3122,404,503 - 122,404,588 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03131,003,723 - 131,003,808 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03128,660,610 - 128,660,695 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03123,833,671 - 123,833,756 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3123,833,671 - 123,833,756 (+)Ensemblrn6Rnor6.0
Celera3117,318,107 - 117,318,192 (+)NCBICelera
Cytogenetic Map3q36NCBI
MIR103A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38203,917,494 - 3,917,571 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl203,917,494 - 3,917,571 (+)Ensemblhg38GRCh38
GRCh37203,898,141 - 3,898,218 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36203,846,140 - 3,846,217 (+)NCBIBuild 36Build 36hg18NCBI36
Celera203,960,014 - 3,960,091 (+)NCBICelera
Cytogenetic Map20p13NCBI
HuRef203,846,794 - 3,846,871 (+)NCBIHuRef
CHM1_1203,898,136 - 3,898,213 (+)NCBICHM1_1
T2T-CHM13v2.0203,948,404 - 3,948,481 (+)NCBIT2T-CHM13v2.0
Mir103-2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392131,129,972 - 131,130,057 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2131,129,972 - 131,130,057 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm382131,288,052 - 131,288,137 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2131,288,052 - 131,288,137 (+)Ensemblmm10GRCm38
MGSCv372131,113,788 - 131,113,873 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
Celera2132,514,231 - 132,514,316 (+)NCBICelera
Cytogenetic Map2F1NCBI
cM Map263.31NCBI
MIR103-2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12417,468,354 - 17,468,430 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2417,468,355 - 17,468,434 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2417,298,078 - 17,298,154 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02417,886,699 - 17,886,775 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2417,886,700 - 17,886,779 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12417,481,690 - 17,481,766 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02417,594,068 - 17,594,144 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02417,920,861 - 17,920,937 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
MIR103-2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1731,808,836 - 31,808,920 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11731,808,837 - 31,808,916 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21736,149,787 - 36,149,866 (-)NCBISscrofa10.2Sscrofa10.2susScr3

miRNA Target Status (No longer updated)

Predicted Targets
Summary Value
Count of predictions:6476
Count of gene targets:4642
Count of transcripts:5002
Interacting mature miRNAs:rno-miR-103-2-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582233Insul10Insulin level QTL 105.40.0015blood insulin amount (VT:0001560)serum insulin level times blood glucose level (CMO:0002040)3133259579178259579Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)396509147141509147Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)3129154923182114333Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)358601291153936591Rat
7387306Bw124Body weight QTL 1243.20.0003body mass (VT:0001259)body weight (CMO:0000012)3104545086149545086Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3133134628178134628Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)381425008141509147Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)3112250810157250810Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)396509147141509147Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)3117537367162537367Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3125116475170116475Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3110225882155225882Rat
1358204Insglur1Insulin/glucose ratio QTL 13.8blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)3136091420155634702Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)390755164141509147Rat
5686842Rf59Renal function QTL 59urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)3122395989167395989Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)3131036586176036586Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3137114333182114333Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)3131036586176036586Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)398651826167012663Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)3125814931139636791Rat
1331758Bp207Blood pressure QTL 2072.848arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3110634702155634702Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)3116188400161188400Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
6 7 25 81 31 34 13 19 13 2 102 54 69 22 35 21

Sequence


Ensembl Acc Id: ENSRNOT00000053619
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3138,963,227 - 138,963,312 (+)Ensembl
mRatBN7.2 Ensembl3118,510,194 - 118,510,279 (+)Ensembl
Rnor_6.0 Ensembl3123,833,671 - 123,833,756 (+)Ensembl
RefSeq Acc Id: NR_031860
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83138,963,227 - 138,963,312 (+)NCBI
mRatBN7.23118,510,194 - 118,510,279 (+)NCBI
Rnor_6.03123,833,671 - 123,833,756 (+)NCBI
Celera3117,318,107 - 117,318,192 (+)NCBI
Sequence:
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:7489028 AgrOrtholog
BioCyc Gene G2FUF-47814 BioCyc
Ensembl Genes ENSRNOG00000035496 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000053619 ENTREZGENE
miRBase MI0000887 ENTREZGENE
NCBI Gene Mir103-2 ENTREZGENE
PhenoGen Mir103a2 PhenoGen
RatGTEx ENSRNOG00000035496 RatGTEx
RNAcentral URS0000476BE1 RNACentral
  URS000075AC7F RNACentral
  URS000075E6B2 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-10 Mir103a2  microRNA 103a-2  Mir103-2  microRNA 103-2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-04-09 Mir103-2  microRNA 103-2  Mir103-2  microRNA mir-103-2  Name updated 61478 APPROVED
2013-12-10 Mir103-2  microRNA mir-103-2      Symbol and Name status set to provisional 70820 PROVISIONAL