Popdc2 (popeye domain cAMP effector 2) - Rat Genome Database

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Gene: Popdc2 (popeye domain cAMP effector 2) Rattus norvegicus
Analyze
Symbol: Popdc2
Name: popeye domain cAMP effector 2 (Ensembl:popeye domain containing 2)
RGD ID: 735226
Description: Predicted to enable cAMP binding activity. Predicted to be involved in several processes, including heart development; skeletal muscle tissue development; and striated muscle cell differentiation. Predicted to act upstream of or within regulation of heart rate and sinoatrial node cell development. Predicted to be located in membrane. Predicted to be active in sarcolemma. Orthologous to human POPDC2 (popeye domain cAMP effector 2); INTERACTS WITH 1,2-dimethylhydrazine; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC100910206; MGC72601; popeye domain containing 2; popeye domain-containing protein 2; popeye domain-containing protein 2-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81175,850,068 - 75,897,094 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1175,880,274 - 75,896,269 (-)EnsemblGRCr8
mRatBN7.21162,351,843 - 62,398,688 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1162,374,759 - 62,390,756 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1171,187,283 - 71,203,279 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01163,849,530 - 63,865,526 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01162,899,864 - 62,915,862 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01164,915,041 - 64,954,704 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1164,936,692 - 64,952,687 (-)Ensemblrn6Rnor6.0
Rnor_5.01167,129,306 - 67,151,642 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41164,154,286 - 64,170,282 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1161,876,220 - 61,892,242 (-)NCBICelera
RGSC_v3.11164,211,875 - 64,227,871 (-)NCBI
Cytogenetic Map11q21NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (EXP,ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,6-dinitrotoluene  (EXP)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (ISO)
alpha-Zearalanol  (EXP)
amphetamine  (EXP)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
Butylbenzyl phthalate  (ISO)
C60 fullerene  (EXP)
cadmium dichloride  (EXP)
carbon nanotube  (ISO)
cisplatin  (EXP,ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dimethylselenide  (ISO)
diuron  (EXP)
doxorubicin  (ISO)
formaldehyde  (ISO)
furan  (EXP)
gallium nitrate  (ISO)
Indeno[1,2,3-cd]pyrene  (ISO)
isotretinoin  (ISO)
lipopolysaccharide  (ISO)
methapyrilene  (ISO)
oxaliplatin  (EXP)
ozone  (EXP,ISO)
panobinostat  (ISO)
paracetamol  (ISO)
PCB138  (EXP)
perfluorooctanoic acid  (EXP)
potassium dichromate  (ISO)
quercetin  (ISO)
reactive oxygen species  (ISO)
rotenone  (EXP,ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium dichromate  (EXP)
sodium fluoride  (ISO)
sulforaphane  (ISO)
tamoxifen  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
thalidomide  (ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trichloroethene  (EXP)
triclosan  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (EXP)
triptonide  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA,ISO)
sarcolemma  (IBA,ISO)

Molecular Function
cAMP binding  (IBA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Isolation and characterization of the novel popeye gene family expressed in skeletal muscle and heart. Andree B, etal., Dev Biol 2000 Jul 15;223(2):371-82.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:17662479   PMID:22354168   PMID:26642364   PMID:28755400   PMID:31505169   PMID:33261556  


Genomics

Comparative Map Data
Popdc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81175,850,068 - 75,897,094 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1175,880,274 - 75,896,269 (-)EnsemblGRCr8
mRatBN7.21162,351,843 - 62,398,688 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1162,374,759 - 62,390,756 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1171,187,283 - 71,203,279 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01163,849,530 - 63,865,526 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01162,899,864 - 62,915,862 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01164,915,041 - 64,954,704 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1164,936,692 - 64,952,687 (-)Ensemblrn6Rnor6.0
Rnor_5.01167,129,306 - 67,151,642 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41164,154,286 - 64,170,282 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1161,876,220 - 61,892,242 (-)NCBICelera
RGSC_v3.11164,211,875 - 64,227,871 (-)NCBI
Cytogenetic Map11q21NCBI
POPDC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383119,642,056 - 119,660,883 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3119,636,457 - 119,665,324 (-)Ensemblhg38GRCh38
GRCh373119,360,903 - 119,379,436 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363120,843,596 - 120,862,094 (-)NCBIBuild 36Build 36hg18NCBI36
Build 343120,843,597 - 120,862,094NCBI
Celera3117,769,457 - 117,787,954 (-)NCBICelera
Cytogenetic Map3q13.33NCBI
HuRef3116,736,572 - 116,755,066 (-)NCBIHuRef
CHM1_13119,324,408 - 119,342,901 (-)NCBICHM1_1
T2T-CHM13v2.03122,361,759 - 122,380,618 (-)NCBIT2T-CHM13v2.0
Popdc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391638,182,523 - 38,198,578 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1638,182,571 - 38,198,578 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381638,362,161 - 38,378,216 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1638,362,209 - 38,378,216 (+)Ensemblmm10GRCm38
MGSCv371638,362,259 - 38,378,302 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361638,281,484 - 38,297,455 (+)NCBIMGSCv36mm8
Celera1638,772,441 - 38,788,493 (+)NCBICelera
Cytogenetic Map16B3NCBI
cM Map1626.79NCBI
Popdc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542719,345,226 - 19,367,759 (-)Ensembl
ChiLan1.0NW_00495542719,347,880 - 19,367,759 (-)NCBIChiLan1.0ChiLan1.0
POPDC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22117,616,288 - 117,634,891 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13117,621,068 - 117,639,660 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03116,761,474 - 116,780,369 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13123,673,815 - 123,692,684 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3123,673,815 - 123,692,684 (-)EnsemblpanPan2panpan1.1
POPDC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13323,275,666 - 23,295,413 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3323,276,455 - 23,295,088 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3323,306,245 - 23,325,293 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03323,513,597 - 23,533,028 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3323,514,929 - 23,548,542 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13323,316,273 - 23,335,538 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03323,352,389 - 23,370,898 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03323,921,853 - 23,941,107 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Popdc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602130,939,491 - 130,958,507 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365366,560,329 - 6,582,331 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365366,562,583 - 6,582,407 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POPDC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13140,601,515 - 140,620,789 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.113140,601,522 - 140,621,928 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213149,932,130 - 149,951,356 (+)NCBISscrofa10.2Sscrofa10.2susScr3
POPDC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12261,160,174 - 61,178,838 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2261,160,413 - 61,178,414 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666041105,133,456 - 105,151,992 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Popdc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473128,493,230 - 28,523,157 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473128,490,489 - 28,521,611 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Popdc2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1423,311,864 - 23,328,066 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Popdc2
377 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:328
Count of miRNA genes:188
Interacting mature miRNAs:223
Transcripts:ENSRNOT00000003999
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)117330848796070872Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)114644316891443168Rat
1598811Bp291Blood pressure QTL 2911.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113330600878306008Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)115892833699753367Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113294306789836615Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)113642841681428416Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)117385089499753367Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)115893182292356038Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)113461876079618760Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)115775483796071021Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112019354996351019Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)116796218499753367Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)117330831599753367Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)115107102196071021Rat
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)112252474682951192Rat
1598841Memor7Memory QTL 7exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)113330600878306008Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)113191546976915469Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)115441539196071021Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)113674945981749459Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)116859932196497754Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)113674945981749459Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)116985594399753367Rat

Markers in Region
RH129757  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21162,374,785 - 62,374,966 (+)MAPPERmRatBN7.2
Rnor_6.01164,936,719 - 64,936,899NCBIRnor6.0
Rnor_5.01167,149,589 - 67,149,769UniSTSRnor5.0
RGSC_v3.41164,154,314 - 64,154,494UniSTSRGSC3.4
Celera1161,876,248 - 61,876,428UniSTS
RH 3.4 Map11508.7UniSTS
Cytogenetic Map11q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000087892   ⟹   ENSRNOP00000071721
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1175,880,274 - 75,896,269 (-)Ensembl
mRatBN7.2 Ensembl1162,374,759 - 62,390,756 (-)Ensembl
Rnor_6.0 Ensembl1164,936,692 - 64,952,687 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095198   ⟹   ENSRNOP00000087674
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1175,884,278 - 75,896,269 (-)Ensembl
mRatBN7.2 Ensembl1162,375,545 - 62,390,756 (-)Ensembl
RefSeq Acc Id: NM_199113   ⟹   NP_954544
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,880,273 - 75,896,269 (-)NCBI
mRatBN7.21162,374,758 - 62,390,756 (-)NCBI
Rnor_6.01164,936,691 - 64,952,687 (-)NCBI
Rnor_5.01167,129,306 - 67,151,642 (+)NCBI
RGSC_v3.41164,154,286 - 64,170,282 (-)RGD
Celera1161,876,220 - 61,892,242 (-)RGD
Sequence:
RefSeq Acc Id: XM_008768733   ⟹   XP_008766955
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,880,278 - 75,897,094 (-)NCBI
mRatBN7.21162,371,985 - 62,391,589 (-)NCBI
Rnor_6.01164,936,696 - 64,954,704 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008768734   ⟹   XP_008766956
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,858,623 - 75,897,094 (-)NCBI
mRatBN7.21162,351,843 - 62,391,590 (-)NCBI
Rnor_6.01164,915,041 - 64,954,704 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598027   ⟹   XP_017453516
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,880,278 - 75,897,080 (-)NCBI
mRatBN7.21162,371,985 - 62,391,575 (-)NCBI
Rnor_6.01164,936,696 - 64,954,703 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039088491   ⟹   XP_038944419
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,887,592 - 75,897,088 (-)NCBI
mRatBN7.21162,382,081 - 62,391,585 (-)NCBI
RefSeq Acc Id: XM_063270639   ⟹   XP_063126709
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,880,278 - 75,897,001 (-)NCBI
RefSeq Acc Id: XM_063270640   ⟹   XP_063126710
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,850,068 - 75,897,001 (-)NCBI
RefSeq Acc Id: XR_005491039
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,880,278 - 75,897,094 (-)NCBI
mRatBN7.21162,371,985 - 62,391,590 (-)NCBI
RefSeq Acc Id: NP_954544   ⟸   NM_199113
- UniProtKB: Q6P722 (UniProtKB/TrEMBL),   A0A8I6GG90 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766956   ⟸   XM_008768734
- Peptide Label: isoform X1
- UniProtKB: A6IR71 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766955   ⟸   XM_008768733
- Peptide Label: isoform X1
- UniProtKB: A6IR71 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453516   ⟸   XM_017598027
- Peptide Label: isoform X1
- UniProtKB: A6IR71 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000071721   ⟸   ENSRNOT00000087892
RefSeq Acc Id: XP_038944419   ⟸   XM_039088491
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000087674   ⟸   ENSRNOT00000095198
RefSeq Acc Id: XP_063126710   ⟸   XM_063270640
- Peptide Label: isoform X2
- UniProtKB: Q6P722 (UniProtKB/TrEMBL),   A0A8I6GG90 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126709   ⟸   XM_063270639
- Peptide Label: isoform X2
- UniProtKB: Q6P722 (UniProtKB/TrEMBL),   A0A8I6GG90 (UniProtKB/TrEMBL)
Protein Domains
POPDC1-3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6P722-F1-model_v2 AlphaFold Q6P722 1-368 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698167
Promoter ID:EPDNEW_R8691
Type:single initiation site
Name:Popdc2_1
Description:popeye domain containing 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01164,952,697 - 64,952,757EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:735226 AgrOrtholog
BioCyc Gene G2FUF-21270 BioCyc
Ensembl Genes ENSRNOG00000058752 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000087892 ENTREZGENE
  ENSRNOT00000087892.3 UniProtKB/TrEMBL
  ENSRNOT00000095198 ENTREZGENE
  ENSRNOT00000095198.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:5599130 IMAGE-MGC_LOAD
InterPro cNMP_bd-like UniProtKB/TrEMBL
  POPDC1-3_dom UniProtKB/TrEMBL
  Popeye_prot UniProtKB/TrEMBL
  RmlC-like_jellyroll UniProtKB/TrEMBL
KEGG Report rno:360718 UniProtKB/TrEMBL
MGC_CLONE MGC:72601 IMAGE-MGC_LOAD
NCBI Gene 360718 ENTREZGENE
PANTHER Popeye UniProtKB/TrEMBL
  POPEYE DOMAIN-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
Pfam Popeye UniProtKB/TrEMBL
PhenoGen Popdc2 PhenoGen
RatGTEx ENSRNOG00000058752 RatGTEx
Superfamily-SCOP cNMP_binding UniProtKB/TrEMBL
UniProt A0A8I6GG90 ENTREZGENE, UniProtKB/TrEMBL
  A6IR71 ENTREZGENE, UniProtKB/TrEMBL
  Q6P722 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-11-12 Popdc2  popeye domain cAMP effector 2  Popdc2  popeye domain containing 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-07-29 Popdc2  popeye domain containing 2  LOC100910206  popeye domain-containing protein 2-like  Data merged from RGD:6499402 737654 PROVISIONAL
2012-07-05 LOC100910206  popeye domain-containing protein 2-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2004-09-10 Popdc2  popeye domain containing 2      Symbol and Name status set to approved 1299863 APPROVED