Gpr108 (G protein-coupled receptor 108) - Rat Genome Database

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Gene: Gpr108 (G protein-coupled receptor 108) Rattus norvegicus
Analyze
Symbol: Gpr108
Name: G protein-coupled receptor 108
RGD ID: 735149
Description: Predicted to be involved in negative regulation of toll-like receptor signaling pathway. Predicted to be located in cis-Golgi network membrane and trans-Golgi network. Predicted to be active in Golgi apparatus and membrane. Orthologous to human GPR108 (G protein-coupled receptor 108); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2-nitrofluorene.
Type: protein-coding
RefSeq Status: PROVISIONAL
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr892,207,716 - 2,218,738 (-)NCBIGRCr8
mRatBN7.292,120,740 - 2,131,771 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl92,120,744 - 2,132,572 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx92,548,682 - 2,559,221 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.097,898,057 - 7,908,596 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.096,853,914 - 6,864,453 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.099,704,300 - 9,714,767 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl99,704,346 - 9,714,755 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.098,711,637 - 8,722,117 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera96,389,776 - 6,400,755 (+)NCBICelera
Cytogenetic Map9q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cis-Golgi network membrane  (IEA,ISO,ISS)
Golgi apparatus  (IBA,IEA,ISO,ISS)
Golgi membrane  (IEA)
membrane  (IBA,IEA)
trans-Golgi network  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334  


Genomics

Comparative Map Data
Gpr108
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr892,207,716 - 2,218,738 (-)NCBIGRCr8
mRatBN7.292,120,740 - 2,131,771 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl92,120,744 - 2,132,572 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx92,548,682 - 2,559,221 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.097,898,057 - 7,908,596 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.096,853,914 - 6,864,453 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.099,704,300 - 9,714,767 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl99,704,346 - 9,714,755 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.098,711,637 - 8,722,117 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera96,389,776 - 6,400,755 (+)NCBICelera
Cytogenetic Map9q11NCBI
GPR108
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38196,729,914 - 6,737,580 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl196,729,914 - 6,737,580 (-)EnsemblGRCh38hg38GRCh38
GRCh37196,729,925 - 6,737,591 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36196,680,925 - 6,688,633 (-)NCBINCBI36Build 36hg18NCBI36
Celera196,672,183 - 6,679,888 (-)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef196,492,417 - 6,500,113 (-)NCBIHuRef
CHM1_1196,729,775 - 6,737,483 (-)NCBICHM1_1
T2T-CHM13v2.0196,719,314 - 6,726,971 (-)NCBIT2T-CHM13v2.0
Gpr108
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391757,541,914 - 57,555,743 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1757,541,635 - 57,555,446 (-)EnsemblGRCm39 Ensembl
GRCm381757,234,914 - 57,248,743 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1757,234,635 - 57,248,446 (-)EnsemblGRCm38mm10GRCm38
MGSCv371757,374,337 - 57,387,064 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361756,920,249 - 56,932,976 (-)NCBIMGSCv36mm8
Celera1761,582,912 - 61,595,639 (-)NCBICelera
Cytogenetic Map17DNCBI
cM Map1729.74NCBI
Gpr108
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554952,782,606 - 2,789,815 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554952,782,549 - 2,789,470 (+)NCBIChiLan1.0ChiLan1.0
GPR108
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22011,143,245 - 11,151,087 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11910,369,357 - 10,377,051 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0195,762,576 - 5,770,169 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1196,684,024 - 6,691,620 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl196,684,024 - 6,691,620 (-)Ensemblpanpan1.1panPan2
GPR108
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12053,554,574 - 53,560,845 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2053,554,445 - 53,565,239 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2053,303,031 - 53,309,226 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02054,209,031 - 54,215,223 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2054,208,903 - 54,216,335 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12053,276,386 - 53,282,573 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02053,724,378 - 53,730,570 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02053,953,848 - 53,960,021 (+)NCBIUU_Cfam_GSD_1.0
Gpr108
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118213,800,582 - 213,807,713 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365884,027,392 - 4,034,162 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365884,027,068 - 4,034,188 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPR108
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl272,418,261 - 72,427,988 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1272,418,219 - 72,427,624 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2272,750,411 - 72,755,262 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GPR108
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.166,299,294 - 6,306,957 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl66,299,548 - 6,306,564 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660811,688,442 - 1,695,938 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gpr108
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248283,805,366 - 3,812,055 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248283,805,151 - 3,812,113 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gpr108
119 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:40
Count of miRNA genes:40
Interacting mature miRNAs:40
Transcripts:ENSRNOT00000075403
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9114209783Rat
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat

Markers in Region
RH131500  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.292,120,854 - 2,121,044 (-)MAPPERmRatBN7.2
Rnor_6.099,714,463 - 9,714,652NCBIRnor6.0
Rnor_5.098,721,791 - 8,721,980UniSTSRnor5.0
Celera96,400,461 - 6,400,650UniSTS
Cytogenetic Map9q11UniSTS
MARC_17747-17748:1031760580:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.292,122,288 - 2,122,790 (-)MAPPERmRatBN7.2
Rnor_6.099,712,717 - 9,713,218NCBIRnor6.0
Rnor_5.098,720,045 - 8,720,546UniSTSRnor5.0
Celera96,398,715 - 6,399,216UniSTS
Cytogenetic Map9q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 35 55 39 19 39 73 35 41 11
Low 8 2 2 2 8 11 1 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000075403   ⟹   ENSRNOP00000064473
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl92,120,747 - 2,131,741 (-)Ensembl
Rnor_6.0 Ensembl99,704,346 - 9,714,755 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099188   ⟹   ENSRNOP00000090899
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl92,120,757 - 2,132,572 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000111815   ⟹   ENSRNOP00000097991
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl92,120,744 - 2,131,749 (-)Ensembl
RefSeq Acc Id: NM_199399   ⟹   NP_955431
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr892,207,722 - 2,218,701 (-)NCBI
mRatBN7.292,120,750 - 2,131,730 (-)NCBI
Rnor_6.099,704,346 - 9,714,757 (+)NCBI
Rnor_5.098,711,637 - 8,722,117 (+)NCBI
Celera96,389,776 - 6,400,755 (+)RGD
Sequence:
RefSeq Acc Id: XM_006244285   ⟹   XP_006244347
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr892,207,716 - 2,218,738 (-)NCBI
mRatBN7.292,120,740 - 2,131,770 (-)NCBI
Rnor_6.099,704,300 - 9,714,767 (+)NCBI
Rnor_5.098,711,637 - 8,722,117 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006244286   ⟹   XP_006244348
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr892,207,716 - 2,218,575 (-)NCBI
mRatBN7.292,120,740 - 2,131,603 (-)NCBI
Rnor_6.099,704,493 - 9,714,767 (+)NCBI
Rnor_5.098,711,637 - 8,722,117 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039083463   ⟹   XP_038939391
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr892,207,716 - 2,218,730 (-)NCBI
mRatBN7.292,120,740 - 2,131,737 (-)NCBI
RefSeq Acc Id: XM_063267063   ⟹   XP_063123133
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr892,207,716 - 2,218,408 (-)NCBI
RefSeq Acc Id: XM_063267064   ⟹   XP_063123134
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr892,207,716 - 2,218,408 (-)NCBI
RefSeq Acc Id: XM_063267065   ⟹   XP_063123135
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr892,207,716 - 2,218,408 (-)NCBI
RefSeq Acc Id: XM_063267066   ⟹   XP_063123136
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr892,207,716 - 2,218,377 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_955431   ⟸   NM_199399
- Peptide Label: precursor
- UniProtKB: M0R518 (UniProtKB/Swiss-Prot),   Q6P6V6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006244347   ⟸   XM_006244285
- Peptide Label: isoform X1
- UniProtKB: Q6P6V6 (UniProtKB/Swiss-Prot),   M0R518 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006244348   ⟸   XM_006244286
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AEE0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000064473   ⟸   ENSRNOT00000075403
RefSeq Acc Id: XP_038939391   ⟸   XM_039083463
- Peptide Label: isoform X3
- UniProtKB: A0A8L2QWL5 (UniProtKB/TrEMBL),   A0A8I6AEE0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000090899   ⟸   ENSRNOT00000099188
RefSeq Acc Id: ENSRNOP00000097991   ⟸   ENSRNOT00000111815
RefSeq Acc Id: XP_063123135   ⟸   XM_063267065
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063123134   ⟸   XM_063267064
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063123133   ⟸   XM_063267063
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063123136   ⟸   XM_063267066
- Peptide Label: isoform X6

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6P6V6-F1-model_v2 AlphaFold Q6P6V6 1-577 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696434
Promoter ID:EPDNEW_R6958
Type:initiation region
Name:Gpr108_1
Description:G protein-coupled receptor 108
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.099,704,318 - 9,704,378EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:735149 AgrOrtholog
BioCyc Gene G2FUF-28482 BioCyc
Ensembl Genes ENSRNOG00000046128 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000075403.2 UniProtKB/TrEMBL
  ENSRNOT00000099188 ENTREZGENE
  ENSRNOT00000099188.1 UniProtKB/TrEMBL
  ENSRNOT00000111815.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:5599699 IMAGE-MGC_LOAD
InterPro GPR107-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:316136 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72562 IMAGE-MGC_LOAD
NCBI Gene 316136 ENTREZGENE
PANTHER PROTEIN GPR108 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR21229 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Lung_7-TM_R UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gpr108 PhenoGen
RatGTEx ENSRNOG00000046128 RatGTEx
UniProt A0A8I6AEE0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AVR5_RAT UniProtKB/TrEMBL
  A0A8L2QWL5 ENTREZGENE, UniProtKB/TrEMBL
  A6KQR0_RAT UniProtKB/TrEMBL
  A6KQR1_RAT UniProtKB/TrEMBL
  A6KQR2_RAT UniProtKB/TrEMBL
  GP108_RAT UniProtKB/Swiss-Prot
  M0R518 ENTREZGENE
  Q6P6V6 ENTREZGENE
UniProt Secondary M0R518 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Gpr108  G protein-coupled receptor 108      Symbol and Name status set to approved 1299863 APPROVED