Vwa5a (von Willebrand factor A domain containing 5A) - Rat Genome Database

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Gene: Vwa5a (von Willebrand factor A domain containing 5A) Rattus norvegicus
Analyze
Symbol: Vwa5a
Name: von Willebrand factor A domain containing 5A
RGD ID: 735145
Description: Orthologous to human VWA5A (von Willebrand factor A domain containing 5A); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC100909460; Loh11cr2a; loss of heterozygosity 11 chromosomal region 2 gene A protein homolog; loss of heterozygosity, 11, chromosomal region 2, gene A homolog; loss of heterozygosity, 11, chromosomal region 2, gene A homolog (human); masa-1; mast cell surface antigen 1; mast cell surface antigen-1; von Willebrand factor A domain-containing protein 5A; von Willebrand factor A domain-containing protein 5A-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8847,712,352 - 47,745,847 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl847,712,369 - 47,736,307 (+)EnsemblGRCr8
mRatBN7.2838,815,176 - 38,848,674 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl838,815,210 - 38,839,112 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx844,298,115 - 44,331,567 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0842,582,189 - 42,615,643 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0840,444,246 - 40,477,696 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0842,442,932 - 42,476,417 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl842,443,442 - 42,466,907 (+)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl3158,997,834 - 159,021,582 (+)Ensemblrn6Rnor6.0
Rnor_5.0842,430,316 - 42,463,799 (+)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.03165,209,720 - 165,233,657 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4840,850,240 - 40,884,975 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
RGSC_v3.1840,859,005 - 40,893,740 (+)NCBI
Cytogenetic Map8q22NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dimethoxyphenol  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (ISO)
antirheumatic drug  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
boron nitride  (ISO)
Brodifacoum  (EXP)
calcitriol  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
DDT  (EXP)
diallyl disulfide  (ISO)
diarsenic trioxide  (ISO)
diazinon  (EXP)
dieldrin  (EXP)
dimethylarsinic acid  (EXP)
endosulfan  (EXP)
esketamine  (ISO)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
furfural  (ISO)
gallic acid  (ISO)
genistein  (ISO)
gentamycin  (EXP)
lipopolysaccharide  (ISO)
methotrexate  (ISO)
methylmercury chloride  (ISO)
nickel dichloride  (EXP)
paracetamol  (EXP,ISO)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
rotenone  (EXP,ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
thiram  (ISO)
triphenyl phosphate  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Molecular cloning and characterization of LOH11CR2A, a new gene within a refined minimal region of LOH at 11q23. Monaco C, etal., Genomics 1997 Dec 1;46(2):217-22.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Vwa5a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8847,712,352 - 47,745,847 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl847,712,369 - 47,736,307 (+)EnsemblGRCr8
mRatBN7.2838,815,176 - 38,848,674 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl838,815,210 - 38,839,112 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx844,298,115 - 44,331,567 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0842,582,189 - 42,615,643 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0840,444,246 - 40,477,696 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0842,442,932 - 42,476,417 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl842,443,442 - 42,466,907 (+)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl3158,997,834 - 159,021,582 (+)Ensemblrn6Rnor6.0
Rnor_5.0842,430,316 - 42,463,799 (+)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.03165,209,720 - 165,233,657 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4840,850,240 - 40,884,975 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
RGSC_v3.1840,859,005 - 40,893,740 (+)NCBI
Cytogenetic Map8q22NCBI
VWA5A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811124,115,450 - 124,147,721 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11124,115,404 - 124,147,721 (+)Ensemblhg38GRCh38
GRCh3711123,986,157 - 124,018,428 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611123,491,321 - 123,522,829 (+)NCBIBuild 36Build 36hg18NCBI36
Build 3411123,491,320 - 123,500,752NCBI
Celera11121,145,259 - 121,176,768 (+)NCBICelera
Cytogenetic Map11q24.2NCBI
HuRef11119,926,988 - 119,958,495 (+)NCBIHuRef
CHM1_111123,872,246 - 123,903,752 (+)NCBICHM1_1
T2T-CHM13v2.011124,144,018 - 124,176,287 (+)NCBIT2T-CHM13v2.0
Vwa5a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39938,629,564 - 38,654,633 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl938,629,564 - 38,654,633 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38938,718,268 - 38,743,337 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl938,718,268 - 38,743,337 (+)Ensemblmm10GRCm38
MGSCv37938,525,853 - 38,550,922 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36938,468,869 - 38,493,908 (+)NCBIMGSCv36mm8
Celera935,961,879 - 35,986,971 (+)NCBICelera
Cytogenetic Map9A5.1NCBI
cM Map920.89NCBI
Vwa5a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541224,850,302 - 24,874,679 (+)Ensembl
ChiLan1.0NW_00495541224,850,301 - 24,874,498 (+)NCBIChiLan1.0ChiLan1.0
VWA5A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29124,812,097 - 124,843,315 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111125,916,591 - 125,947,808 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011118,943,755 - 118,974,886 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111122,860,181 - 122,891,317 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11122,860,255 - 122,891,317 (+)EnsemblpanPan2panpan1.1
VWA5A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1510,337,879 - 10,362,299 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl510,325,266 - 10,362,641 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha510,388,163 - 10,412,595 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0510,287,416 - 10,311,860 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl510,274,814 - 10,311,758 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1510,354,604 - 10,379,031 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0510,323,710 - 10,348,115 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0510,369,039 - 10,393,454 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
LOC101956908
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947105,997,348 - 106,026,915 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936743244,895 - 274,495 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936743244,921 - 274,477 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VWA5A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl951,052,174 - 51,100,045 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1951,052,113 - 51,100,049 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2956,523,864 - 56,571,792 (+)NCBISscrofa10.2Sscrofa10.2susScr3
VWA5A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11115,349,429 - 115,377,792 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1115,350,613 - 115,371,704 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604310,745,868 - 10,773,122 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vwa5a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624880882,901 - 912,620 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624880876,339 - 912,628 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Vwa5a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1832,449,222 - 32,469,386 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Vwa5a
128 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:161
Count of miRNA genes:132
Interacting mature miRNAs:138
Transcripts:ENSRNOT00000000211, ENSRNOT00000015986
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83975280384752803Rat
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)81799410550763951Rat
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83910625891341052Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)81699464261994642Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83910625891341052Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)839106363103375781Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)81595227960952279Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)81296416557964165Rat
11556286Cm81Cardiac mass QTL 810.01heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)83910625884106258Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)81296416557964165Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)81038254055382540Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)839106363103375781Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)84447792689477926Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)81699464261994642Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)81038254055382540Rat
61337Bp22Blood pressure QTL 225.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625851589833Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)839106258103375958Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)81296416557964165Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)81038254055382540Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83910625891341052Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)835464071107982864Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)84754141992541419Rat
2302278Gluco36Glucose level QTL 364.2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)83776085958991895Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)81038254055382540Rat
724514Uae15Urinary albumin excretion QTL 152.9urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)83776085961459705Rat
631648Stl5Serum triglyceride level QTL 540.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)83546407171842899Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83910625884106258Rat
631842Inf1Infertility severity QTL 14.10.001seminal gland mass (VT:0010524)seminal vesicle wet weight (CMO:0001603)83154366176543661Rat
1359033Bp273Blood pressure QTL 273arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625884106258Rat
61358Bp39Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84444783789447837Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)835464071107982864Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)81799386262252873Rat
1331744Bp217Blood pressure QTL 2173.398arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625867378345Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)839106363114525825Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83910625891341052Rat
724540Uae8Urinary albumin excretion QTL 85urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)839106258103375958Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)835464071107982864Rat
1359021Bp271Blood pressure QTL 2711.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)83412590255607752Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)81799410550763951Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)84447504389475043Rat
70206Alc20Alcohol consumption QTL 202drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)83910625849610361Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
13 15 91 155 100 103 78 98 78 414 211 11 143 99 99 25 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000000211   ⟹   ENSRNOP00000000211
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl847,712,369 - 47,736,301 (+)Ensembl
mRatBN7.2 Ensembl838,815,210 - 38,839,112 (+)Ensembl
Rnor_6.0 Ensembl3158,997,834 - 159,021,582 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000015986   ⟹   ENSRNOP00000015986
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl847,712,404 - 47,736,307 (+)Ensembl
mRatBN7.2 Ensembl838,815,221 - 38,839,107 (+)Ensembl
Rnor_6.0 Ensembl842,443,442 - 42,466,907 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000095314   ⟹   ENSRNOP00000089456
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl847,712,404 - 47,736,300 (+)Ensembl
mRatBN7.2 Ensembl838,815,210 - 38,839,112 (+)Ensembl
RefSeq Acc Id: NM_001393948   ⟹   NP_001380877
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8847,712,386 - 47,736,299 (+)NCBI
mRatBN7.2838,815,210 - 38,839,126 (+)NCBI
RefSeq Acc Id: NR_172059
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8847,712,406 - 47,745,847 (+)NCBI
mRatBN7.2838,815,230 - 38,848,674 (+)NCBI
RefSeq Acc Id: XM_039081323   ⟹   XP_038937251
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8847,712,352 - 47,736,299 (+)NCBI
mRatBN7.2838,815,176 - 38,839,130 (+)NCBI
RefSeq Acc Id: XM_063265315   ⟹   XP_063121385
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8847,712,352 - 47,736,299 (+)NCBI
RefSeq Acc Id: XM_063265316   ⟹   XP_063121386
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8847,712,376 - 47,736,299 (+)NCBI
RefSeq Acc Id: XM_063265317   ⟹   XP_063121387
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8847,712,352 - 47,736,299 (+)NCBI
RefSeq Acc Id: XM_063265318   ⟹   XP_063121388
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8847,712,382 - 47,736,299 (+)NCBI
RefSeq Acc Id: XM_063265319   ⟹   XP_063121389
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8847,712,359 - 47,736,299 (+)NCBI
Ensembl Acc Id: ENSRNOP00000000211   ⟸   ENSRNOT00000000211
Ensembl Acc Id: ENSRNOP00000015986   ⟸   ENSRNOT00000015986
RefSeq Acc Id: XP_038937251   ⟸   XM_039081323
- Peptide Label: isoform X3
- UniProtKB: A0A0H2UH90 (UniProtKB/TrEMBL),   A0A140TAB5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000089456   ⟸   ENSRNOT00000095314
RefSeq Acc Id: NP_001380877   ⟸   NM_001393948
- UniProtKB: A0A140TAB5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121385   ⟸   XM_063265315
- Peptide Label: isoform X1
- UniProtKB: A0A140TAB5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121387   ⟸   XM_063265317
- Peptide Label: isoform X2
- UniProtKB: Q75WE7 (UniProtKB/Swiss-Prot),   A0A140TAB5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121389   ⟸   XM_063265319
- Peptide Label: isoform X4
- UniProtKB: A0A140TAB5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121386   ⟸   XM_063265316
- Peptide Label: isoform X1
- UniProtKB: A0A140TAB5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121388   ⟸   XM_063265318
- Peptide Label: isoform X3
- UniProtKB: A0A0H2UH90 (UniProtKB/TrEMBL),   A0A140TAB5 (UniProtKB/TrEMBL)
Protein Domains
VIT   VWFA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q75WE7-F1-model_v2 AlphaFold Q75WE7 1-822 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:735145 AgrOrtholog
BioCyc Gene G2FUF-30939 BioCyc
Ensembl Genes ENSRNOG00000000195 Ensembl, ENTREZGENE
  ENSRNOG00000046414 Ensembl
Ensembl Transcript ENSRNOT00000000211 ENTREZGENE
  ENSRNOT00000015986 ENTREZGENE
Gene3D-CATH 3.40.50.410 UniProtKB/Swiss-Prot
InterPro VIT UniProtKB/Swiss-Prot
  VWF_A UniProtKB/Swiss-Prot
  vWFA_dom_sf UniProtKB/Swiss-Prot
NCBI Gene 301097 ENTREZGENE
PANTHER VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 5A UniProtKB/Swiss-Prot
  VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 5A UniProtKB/Swiss-Prot
Pfam VIT UniProtKB/Swiss-Prot
  VWA_3 UniProtKB/Swiss-Prot
PhenoGen Vwa5a PhenoGen
PROSITE VIT UniProtKB/Swiss-Prot
  VWFA UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000000195 RatGTEx
  ENSRNOG00000046414 RatGTEx
SMART VIT UniProtKB/Swiss-Prot
  VWA UniProtKB/Swiss-Prot
Superfamily-SCOP SSF53300 UniProtKB/Swiss-Prot
UniProt A0A0H2UH90 ENTREZGENE, UniProtKB/TrEMBL
  A0A140TAB5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ACP1_RAT UniProtKB/TrEMBL
  Q75WE7 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-29 Vwa5a  von Willebrand factor A domain containing 5A  LOC100909460  von Willebrand factor A domain-containing protein 5A-like  Data merged from RGD:6503678 737654 PROVISIONAL
2012-07-05 LOC100909460  von Willebrand factor A domain-containing protein 5A-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-09-18 Vwa5a  von Willebrand factor A domain containing 5A  Loh11cr2a  loss of heterozygosity, 11, chromosomal region 2, gene A homolog (human)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Loh11cr2a  loss of heterozygosity, 11, chromosomal region 2, gene A homolog (human)  masa-1  mast cell surface antigen-1  Symbol and Name updated 1299863 APPROVED