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Gene: Fpgt (fucose-1-phosphate guanylyltransferase) Rattus norvegicus

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Symbol:

Fpgt

Name:

fucose-1-phosphate guanylyltransferase

RGD ID:

735121

Description:

Predicted to enable fucose-1-phosphate guanylyltransferase activity. Predicted to be involved in GDP-L-fucose salvage and L-fucose metabolic process. Orthologous to human FPGT (fucose-1-phosphate guanylyltransferase); PARTICIPATES IN fructose and mannose metabolic pathway; fructosuria pathway; hereditary fructose intolerance syndrome pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

gdp-L-fucose pyrophosphorylase

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FPGT (fucose-1-phosphate guanylyltransferase)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Fpgt (fucose-1-phosphate guanylyltransferase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Fpgt (fucose-1-phosphate guanylyltransferase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FPGT (fucose-1-phosphate guanylyltransferase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Fpgt (fucose-1-phosphate guanylyltransferase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FPGT (fucose-1-phosphate guanylyltransferase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FPGT (fucose-1-phosphate guanylyltransferase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Fpgt (fucose-1-phosphate guanylyltransferase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Fpgt (fucose-1-phosphate guanylyltransferase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	FPGT (fucose-1-phosphate guanylyltransferase)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Fpgt (fucose-1-phosphate guanylyltransferase)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	fpgt (fucose-1-phosphate guanylyltransferase)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	K03H1.13	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	fpgt	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	fpgt	Alliance	DIOPT (OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	LOC116410499	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	246,757,982 - 246,778,896 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	246,757,986 - 246,778,848 (-)	Ensembl				GRCr8
mRatBN7.2	2	244,099,031 - 244,119,967 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	244,099,076 - 244,119,899 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	251,861,151 - 251,882,057 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	249,754,957 - 249,775,861 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	244,695,344 - 244,716,234 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	261,382,015 - 261,402,950 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	261,382,060 - 261,402,903 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	280,053,847 - 280,074,755 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	252,878,847 - 252,885,883 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	235,972,365 - 235,979,401 (-)	NCBI		Celera
RGSC_v3.1	2	252,893,453 - 252,900,490 (-)	NCBI
Cytogenetic Map	2	q45	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

renal cell carcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4-dinitrotoluene (EXP)

3,4-methylenedioxymethamphetamine (ISO)

aristolochic acid A (ISO)

atrazine (EXP)

Azoxymethane (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (ISO)

carbamazepine (ISO)

choline (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dextran sulfate (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

folic acid (ISO)

formaldehyde (ISO)

hydrogen peroxide (ISO)

hydroquinone O-beta-D-glucopyranoside (ISO)

kojic acid (ISO)

L-methionine (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methoxychlor (EXP)

methylmercury chloride (ISO)

nickel atom (ISO)

nickel dichloride (ISO)

propiconazole (ISO)

quercetin (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

thiram (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

triphenyl phosphate (ISO)

urethane (ISO)

valproic acid (ISO)

vorinostat (ISO)

zalcitabine (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

GDP-L-fucose biosynthetic process (IEA)

GDP-L-fucose salvage (IEA,ISO)

L-fucose metabolic process (IEA,ISO)

Molecular Function

fucose-1-phosphate guanylyltransferase activity (IEA,ISO)

nucleotide binding (IEA)

transferase activity (IEA)

transferase activity, transferring phosphorus-containing groups (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

amino sugar metabolic pathway (IEA)

fructose and mannose metabolic pathway (IEA,ISO)

fructosuria pathway (ISO)

hereditary fructose intolerance syndrome pathway (ISO)

nucleotide sugar metabolic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	GDP-L-fucose pyrophosphorylase. Purification, cDNA cloning, and properties of the enzyme.	Pastuszak I, etal., J Biol Chem 1998 Nov 13;273(46):30165-74.
2.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
3.	SMPDB Annotation Import Pipeline	Pipeline to import SMPDB annotations from SMPDB into RGD
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Fpgt
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	246,757,982 - 246,778,896 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	246,757,986 - 246,778,848 (-)	Ensembl				GRCr8
mRatBN7.2	2	244,099,031 - 244,119,967 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	244,099,076 - 244,119,899 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	251,861,151 - 251,882,057 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	249,754,957 - 249,775,861 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	244,695,344 - 244,716,234 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	261,382,015 - 261,402,950 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	261,382,060 - 261,402,903 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	280,053,847 - 280,074,755 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	252,878,847 - 252,885,883 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	235,972,365 - 235,979,401 (-)	NCBI		Celera
RGSC_v3.1	2	252,893,453 - 252,900,490 (-)	NCBI
Cytogenetic Map	2	q45	NCBI

FPGT
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	74,198,242 - 74,208,702 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	74,198,238 - 74,234,086 (+)	Ensembl			hg38	GRCh38
GRCh37	1	74,663,926 - 74,674,386 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	74,436,514 - 74,445,708 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	74,375,946 - 74,384,845	NCBI
Celera	1	72,909,489 - 72,918,673 (+)	NCBI		Celera
Cytogenetic Map	1	p31.1	NCBI
HuRef	1	72,798,796 - 72,809,184 (+)	NCBI		HuRef
CHM1_1	1	74,779,575 - 74,790,046 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	74,039,794 - 74,050,235 (+)	NCBI		T2T-CHM13v2.0

Fpgt
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	154,790,552 - 154,799,024 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	154,790,555 - 154,799,040 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	3	155,084,915 - 155,093,387 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	155,084,918 - 155,093,403 (-)	Ensembl			mm10	GRCm38
MGSCv37	3	154,747,882 - 154,756,342 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	3	155,020,206 - 155,028,696 (-)	NCBI		MGSCv36	mm8
Celera	3	161,542,885 - 161,551,345 (-)	NCBI		Celera
Cytogenetic Map	3	H4	NCBI
cM Map	3	79.53	NCBI

Fpgt
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955423	18,431,717 - 18,439,673 (-)	Ensembl
ChiLan1.0	NW_004955423	18,430,520 - 18,438,760 (-)	NCBI	ChiLan1.0	ChiLan1.0

FPGT
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	72,107,789 - 72,138,834 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	72,124,609 - 72,138,778 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	74,798,273 - 74,804,448 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	72,703,766 - 72,734,815 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	72,720,531 - 72,734,832 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	72,249,615 - 72,255,781 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	72,168,805 - 72,174,986 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	72,664,485 - 72,670,660 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Fpgt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	86,012,381 - 86,020,340 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936571	1,522,741 - 1,530,725 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936571	1,522,765 - 1,530,418 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FPGT
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	138,940,486 - 138,950,356 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	138,941,832 - 138,950,340 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	128,714,260 - 128,722,771 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FPGT
(Chlorocebus sabaeus - green monkey)

No map positions available.

Fpgt
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624742	22,463,143 - 22,471,660 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624742	22,463,878 - 22,471,732 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Fpgt
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	6,356,342 - 6,365,216 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Fpgt
172 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	113
Count of miRNA genes:	95
Interacting mature miRNAs:	100
Transcripts:	ENSRNOT00000052396
Prediction methods:	Microtar, Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631501	Bp101	Blood pressure QTL 101	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	205135267	250135267	Rat
2307174	Activ3	Activity QTL 3	4.83	0.000058	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	210956252	251712708	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	143344967	251712708	Rat
1298075	Scl17	Serum cholesterol level QTL 17	3.4		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	214404877	251712708	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	143344967	251712708	Rat
2293833	Kiddil8	Kidney dilation QTL 8	2.9		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	220274283	249795005	Rat
1598835	Anxrr18	Anxiety related response QTL 18	2.98		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	2	203664411	248664411	Rat
1300126	Bp175	Blood pressure QTL 175	3.46		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	204795005	249795005	Rat
7207490	Bss111	Bone structure and strength QTL 111	6.4		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	2	214404877	251712708	Rat
7207484	Bss108	Bone structure and strength QTL 108	5.3		femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	2	214404877	251712708	Rat
2313073	Bmd75	Bone mineral density QTL 75	4.1	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	2	218051934	251712708	Rat
7207482	Bss107	Bone structure and strength QTL 107	7		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	2	214404877	251712708	Rat
2293844	Kiddil7	Kidney dilation QTL 7	3.5		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	220274283	249795005	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	151869660	251712708	Rat
2317752	Glom23	Glomerulus QTL 23	3.6		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	2	196140964	251540988	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	205135267	250135267	Rat
1549836	Bss2	Bone structure and strength QTL 2	7.5		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	2	214404877	251712708	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	2	205135267	250135267	Rat

Markers in Region

AI502340

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	244,117,738 - 244,117,919 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	261,400,743 - 261,400,923	NCBI	Rnor6.0
Rnor_5.0	2	280,072,551 - 280,072,731	UniSTS	Rnor5.0
RGSC_v3.4	2	252,883,725 - 252,883,905	UniSTS	RGSC3.4
Celera	2	235,977,243 - 235,977,423	UniSTS
Cytogenetic Map	2	q45	UniSTS

RH138982

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	244,111,959 - 244,112,128 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	261,394,964 - 261,395,132	NCBI	Rnor6.0
Rnor_5.0	2	280,066,772 - 280,066,940	UniSTS	Rnor5.0
RGSC_v3.4	2	252,877,946 - 252,878,114	UniSTS	RGSC3.4
Celera	2	235,971,464 - 235,971,632	UniSTS
RH 3.4 Map	2	1639.8	UniSTS
Cytogenetic Map	2	q45	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	91	59	6	355	191	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001389223	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_199494	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102485	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102488	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281980	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC128870	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJ276066	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC088089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC168244	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000052396 ⟹ ENSRNOP00000046627

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	246,768,685 - 246,778,848 (-)	Ensembl
mRatBN7.2 Ensembl	2	244,108,862 - 244,119,899 (-)	Ensembl
Rnor_6.0 Ensembl	2	261,395,865 - 261,402,880 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000077839 ⟹ ENSRNOP00000074607

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	246,757,986 - 246,778,848 (-)	Ensembl
mRatBN7.2 Ensembl	2	244,099,076 - 244,119,899 (-)	Ensembl
Rnor_6.0 Ensembl	2	261,382,060 - 261,402,903 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000088561 ⟹ ENSRNOP00000071383

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	246,770,167 - 246,778,848 (-)	Ensembl
mRatBN7.2 Ensembl	2	244,111,371 - 244,119,880 (-)	Ensembl
Rnor_6.0 Ensembl	2	261,394,222 - 261,402,903 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097419 ⟹ ENSRNOP00000076400

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	244,109,774 - 244,119,899 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000101945 ⟹ ENSRNOP00000080471

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	244,101,613 - 244,119,899 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000135367 ⟹ ENSRNOP00000099527

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	246,757,986 - 246,778,848 (-)	Ensembl

RefSeq Acc Id:

NM_001389223 ⟹ NP_001376152

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	246,757,986 - 246,778,848 (-)	NCBI
mRatBN7.2	2	244,099,031 - 244,119,901 (-)	NCBI

RefSeq Acc Id:

NM_199494 ⟹ NP_955788

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	246,770,167 - 246,778,848 (-)	NCBI
mRatBN7.2	2	244,111,220 - 244,119,901 (-)	NCBI
Rnor_6.0	2	261,395,865 - 261,402,901 (-)	NCBI
Rnor_5.0	2	280,053,847 - 280,074,755 (-)	NCBI
RGSC_v3.4	2	252,878,847 - 252,885,883 (-)	RGD
Celera	2	235,972,365 - 235,979,401 (-)	RGD

Sequence:

show sequence

GTGGGCTCCCGGAAGTCGGCCATGGAGACTCTCCGGGAAGCCACCCTGCGGAAACTGCGCAGAT
TTTCGGAGCTGAGAGGCAAACCTGTGGCAGCTGGAGAATTCTGGGATGTGGTTGCGATAACAGC
AGCCGATGAAAAGCAGGAGCTCGCTTACAAGCAGCAGTTGTCAGAAAAGCTGAGAAGAAAGGAA
TTGCCTCTTGGAGTTCAATACCATGTTTTTCCTGATCCTGCTGGGACCAAAATTGGAAATGGAG
GATCGACACTTTGTTCCCTTCAGTGCCTAAAAAGCCTCTATGGAGATGAATGGAATTCTTTCAA
GGTCCTGTTAATTCACTCCGGTGGCTACAGTCAACGCCTTCCCAATGCAAGTGCTTTAGGAAAG
ATCTTCACAGCCTTACCACTTGGTGAACCCATCTATCAGATGTTGGAGTTAAAACTAGCCATGT
ACGTGGATTTCCCCTCACACATGAAGCCTGGAGTCTTGGTCACCTGTGCAGATGACATTGAACT
GTACAGTGTTGGGGACTGTCAGTACATTGCCTTTGACCAGCCTGGCTTTACTGCCTTAGCCCAT
CCTTCCAGTCTGGCTGTAGGCACCACACACGGAGTATTTGTCTTGCACTCTGCCAGTTCCTTAC
AACATGGTGACCTTCAGTACAGACAATGCCACCGTTTCCTCCACAAGCCCACCATTGAAAACAT
GCATCAGTTTAATGCTGTGCAAAGACAAGGAAGCTTTGCTCAACAGGACTTCCCTGGAGGTGAC
ACCGCGTGTCTTCCATTGCACACTGAGTATGTCTACACAGATAGCCTGTTTTACATGGACCACA
AATCGGCCAAAAAGTTACTTGATTTCTATAAAAATGTAAACCAACTGAACTGTGAAATAGATGC
CTATGGTGACTTTCTGCAGGCACTGGGGCCTGGAGCAACTGCAGAGTATACCAGGAACACATCA
CATGTCACTAAAGAAGACTCCCAGTTGTTGGACATGAGGCAGAAAATATTCCACCTCCTCAAGG
GGACACCACTGAATGTTGTTGTTCTTAATAACTCCAGATTTTATCACATTGGAACAACACAAGA
ATATCTGCTTCATTTCACGTCTGATAGTACGTTAAGGTCAAGAGCTAGGCTTACAGTCCATAGC
TTTCAAGTGTCTCTCCAAGTATCCCTGAATCCTCCAATGAAACAGCCTGTATCATTCACAGTAT
ACTGGGATTCAGGATGCTGTGTGGCACCTGGCTCAGTTGTAGAGTATTCTAGACTGGGGCCTGA
GGTGTCCATTGGGGAAAACTGCATTGTCAGCAGCTCTGTCCTAGCAAACACTGCTGTGCCGGCA
TATTCTTTTGTGTGTTCTCTAAGTGTGAGGACAAATGGACTCTTGGAATATTCTACCATGGTGT
TTAGTGTGCAGGACAACTTGAAAGGCAGTGTTAAAACCCTGGAAGATATAAAGGCACTTCAGTT
CTTTGGAGTCTGTTTCTTGTCTTGTTTAGACATCTGGAACCTTAAAGCTACAGAGAAACTGTTC
TCTGGAAGTAAGAGGAACCTGAGCCTGTGGACTGCACGGATTTTCCCTGTCTGTCCTTCTCTGA
GTGAGTCAGTTACAGCATCCCTTGGGATGTTAAGTGCTGTAAGGAGCCATTCACCATTCAGCCT
AAGCAACTTTAAGCTGATGTCCATCCAGGAAATGCTTGTCTACAAAGATGTACAAGACATGCTA
GCTTATAGGGAGCAAATTTTTCTAGAAATTAATTCAAATAAAAAACAATCTGATTTAGAGAAAT
CTTAA

hide sequence

RefSeq Acc Id:

XM_039102485 ⟹ XP_038958413

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	246,770,167 - 246,778,693 (-)	NCBI
mRatBN7.2	2	244,111,220 - 244,119,812 (-)	NCBI

RefSeq Acc Id:

XM_039102488 ⟹ XP_038958416

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	246,768,486 - 246,778,896 (-)	NCBI
mRatBN7.2	2	244,104,195 - 244,119,967 (-)	NCBI

RefSeq Acc Id:

XM_063281980 ⟹ XP_063138050

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	246,770,167 - 246,778,555 (-)	NCBI

RefSeq Acc Id:

XM_063281981 ⟹ XP_063138051

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	246,760,543 - 246,778,896 (-)	NCBI

RefSeq Acc Id:

XM_063281982 ⟹ XP_063138052

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	246,757,982 - 246,778,896 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001376152	(Get FASTA)	NCBI Sequence Viewer
	NP_955788	(Get FASTA)	NCBI Sequence Viewer
	XP_038958413	(Get FASTA)	NCBI Sequence Viewer
	XP_038958416	(Get FASTA)	NCBI Sequence Viewer
	XP_063138050	(Get FASTA)	NCBI Sequence Viewer
	XP_063138051	(Get FASTA)	NCBI Sequence Viewer
	XP_063138052	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH88089	(Get FASTA)	NCBI Sequence Viewer
	AAI68244	(Get FASTA)	NCBI Sequence Viewer
	CAC81970	(Get FASTA)	NCBI Sequence Viewer
	EDL82545	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000046627.3
	ENSRNOP00000071383
	ENSRNOP00000071383.1
	ENSRNOP00000074607
	ENSRNOP00000074607.1
	ENSRNOP00000099527.1

RefSeq Acc Id:	NP_955788 ⟸ NM_199494
- Peptide Label:	isoform 1
- UniProtKB:	A0A0G2K0C0 (UniProtKB/TrEMBL), A6HWQ9 (UniProtKB/TrEMBL), B4F7E4 (UniProtKB/TrEMBL)
- Sequence:	show sequence METLREATLRKLRRFSELRGKPVAAGEFWDVVAITAADEKQELAYKQQLSEKLRRKELPLGVQY HVFPDPAGTKIGNGGSTLCSLQCLKSLYGDEWNSFKVLLIHSGGYSQRLPNASALGKIFTALPL GEPIYQMLELKLAMYVDFPSHMKPGVLVTCADDIELYSVGDCQYIAFDQPGFTALAHPSSLAVG TTHGVFVLHSASSLQHGDLQYRQCHRFLHKPTIENMHQFNAVQRQGSFAQQDFPGGDTACLPLH TEYVYTDSLFYMDHKSAKKLLDFYKNVNQLNCEIDAYGDFLQALGPGATAEYTRNTSHVTKEDS QLLDMRQKIFHLLKGTPLNVVVLNNSRFYHIGTTQEYLLHFTSDSTLRSRARLTVHSFQVSLQV SLNPPMKQPVSFTVYWDSGCCVAPGSVVEYSRLGPEVSIGENCIVSSSVLANTAVPAYSFVCSL SVRTNGLLEYSTMVFSVQDNLKGSVKTLEDIKALQFFGVCFLSCLDIWNLKATEKLFSGSKRNL SLWTARIFPVCPSLSESVTASLGMLSAVRSHSPFSLSNFKLMSIQEMLVYKDVQDMLAYREQIF LEINSNKKQSDLEKS hide sequence

Ensembl Acc Id:

ENSRNOP00000074607 ⟸ ENSRNOT00000077839

Ensembl Acc Id:

ENSRNOP00000046627 ⟸ ENSRNOT00000052396

Ensembl Acc Id:

ENSRNOP00000071383 ⟸ ENSRNOT00000088561

RefSeq Acc Id:	NP_001376152 ⟸ NM_001389223
- Peptide Label:	isoform 2
- UniProtKB:	Q5I0Q1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038958416 ⟸ XM_039102488
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZJ53 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038958413 ⟸ XM_039102485
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSRNOP00000080471 ⟸ ENSRNOT00000101945

Ensembl Acc Id:

ENSRNOP00000076400 ⟸ ENSRNOT00000097419

RefSeq Acc Id:	XP_063138052 ⟸ XM_063281982
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5ZJ53 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063138051 ⟸ XM_063281981
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZPW3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063138050 ⟸ XM_063281980
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSRNOP00000099527 ⟸ ENSRNOT00000135367

Protein Domains

GDP-fucose pyrophosphorylase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K0C0-F1-model_v2	AlphaFold	A0A0G2K0C0	1-590	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691841

Promoter ID:

EPDNEW_R2359

Type:

initiation region

Name:

Fpgt_1

Description:

fucose-1-phosphate guanylyltransferase

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	261,402,888 - 261,402,948	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:735121	AgrOrtholog
BioCyc Gene	G2FUF-50730	BioCyc
BioCyc Pathway	PWY-6 [GDP-L-fucose biosynthesis II (from L-fucose)]	BioCyc
BioCyc Pathway Image	PWY-6	BioCyc
Ensembl Genes	ENSRNOG00000009548	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000052396.5	UniProtKB/TrEMBL
	ENSRNOT00000077839	ENTREZGENE
	ENSRNOT00000077839.3	UniProtKB/TrEMBL
	ENSRNOT00000088561	ENTREZGENE
	ENSRNOT00000088561.3	UniProtKB/TrEMBL
	ENSRNOT00000135367.1	UniProtKB/TrEMBL
Gene3D-CATH	Hexapeptide repeat proteins	UniProtKB/TrEMBL
InterPro	Fucokinase	UniProtKB/TrEMBL
	Fucose-1-phosphate_GuaTrfase	UniProtKB/TrEMBL
	Trimer_LpxA-like	UniProtKB/TrEMBL
NCBI Gene	310935	ENTREZGENE
PANTHER	FUCOSE-1-PHOSPHATE GUANYLYLTRANSFERASE	UniProtKB/TrEMBL
	FUCOSE-1-PHOSPHATE GUANYLYLTRANSFERASE	UniProtKB/TrEMBL
Pfam	Fucokinase	UniProtKB/TrEMBL
PhenoGen	Fpgt	PhenoGen
PIRSF	FPGT	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000009548	RatGTEx
Superfamily-SCOP	SSF51161	UniProtKB/TrEMBL
UniProt	A0A0G2K0C0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZJ53	ENTREZGENE
	A0A8I5ZPW3	ENTREZGENE
	A0ABK0LFA5_RAT	UniProtKB/TrEMBL
	A6HWQ9	ENTREZGENE, UniProtKB/TrEMBL
	B4F7E4	ENTREZGENE, UniProtKB/TrEMBL
	E9PSM4_RAT	UniProtKB/TrEMBL
	Q5I0Q1	ENTREZGENE, UniProtKB/TrEMBL
	Q712G8_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-09-10	Fpgt	fucose-1-phosphate guanylyltransferase			Symbol and Name status set to approved	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

BioCyc Pathways

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Imported Disease Annotations - CTD

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

BioCyc Pathways