C2cd2 (C2 calcium-dependent domain containing 2) - Rat Genome Database

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Gene: C2cd2 (C2 calcium-dependent domain containing 2) Rattus norvegicus
Analyze
Symbol: C2cd2
Name: C2 calcium-dependent domain containing 2
RGD ID: 735112
Description: Predicted to be located in membrane. Orthologous to human C2CD2 (C2 calcium dependent domain containing 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: C2 domain-containing protein 2; hypothetical protein LOC304055; MGC72630; RGD735112; similar to RIKEN cDNA 5830404H04
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81150,694,680 - 50,759,096 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1150,694,563 - 50,759,016 (-)EnsemblGRCr8
mRatBN7.21137,225,321 - 37,289,741 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1137,227,415 - 37,289,739 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1145,928,404 - 45,990,048 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01138,599,791 - 38,661,439 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01137,759,738 - 37,821,394 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01138,354,746 - 38,420,133 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1138,357,424 - 38,420,119 (-)Ensemblrn6Rnor6.0
Rnor_5.01141,867,286 - 41,929,981 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41137,873,369 - 37,935,054 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1137,112,352 - 37,174,079 (-)NCBICelera
RGSC_v3.11137,930,958 - 37,992,643 (-)NCBI
Cytogenetic Map11q12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2-hydroxypropanoic acid  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
alpha-pinene  (ISO)
amiodarone  (EXP)
amitrole  (EXP)
amphetamine  (EXP)
benzbromarone  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
C60 fullerene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
captan  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
clofibrate  (EXP,ISO)
coumarin  (ISO)
cyproconazole  (ISO)
cytarabine  (ISO)
dexamethasone  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
endosulfan  (EXP)
epoxiconazole  (ISO)
flutamide  (EXP)
folpet  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
indometacin  (ISO)
inulin  (ISO)
L-ethionine  (EXP)
levofloxacin  (EXP)
methamphetamine  (EXP)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N,N-diethyl-m-toluamide  (EXP)
omeprazole  (EXP)
ozone  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
permethrin  (EXP)
phenylmercury acetate  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (EXP,ISO)
propiconazole  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sulfadimethoxine  (EXP)
tamoxifen  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP)
thimerosal  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
valproic acid  (ISO)

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:16780588  


Genomics

Comparative Map Data
C2cd2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81150,694,680 - 50,759,096 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1150,694,563 - 50,759,016 (-)EnsemblGRCr8
mRatBN7.21137,225,321 - 37,289,741 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1137,227,415 - 37,289,739 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1145,928,404 - 45,990,048 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01138,599,791 - 38,661,439 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01137,759,738 - 37,821,394 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01138,354,746 - 38,420,133 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1138,357,424 - 38,420,119 (-)Ensemblrn6Rnor6.0
Rnor_5.01141,867,286 - 41,929,981 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41137,873,369 - 37,935,054 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1137,112,352 - 37,174,079 (-)NCBICelera
RGSC_v3.11137,930,958 - 37,992,643 (-)NCBI
Cytogenetic Map11q12NCBI
C2CD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382141,885,112 - 41,954,018 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2141,885,112 - 41,954,018 (-)Ensemblhg38GRCh38
GRCh372143,305,221 - 43,374,127 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362142,178,288 - 42,247,068 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342142,178,290 - 42,219,847NCBI
Celera2128,452,727 - 28,521,539 (-)NCBICelera
Cytogenetic Map21q22.3NCBI
HuRef2128,723,171 - 28,791,614 (-)NCBIHuRef
CHM1_12142,866,059 - 42,934,842 (-)NCBICHM1_1
T2T-CHM13v2.02140,275,427 - 40,344,241 (-)NCBIT2T-CHM13v2.0
C2cd2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391697,656,409 - 97,727,248 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1697,656,409 - 97,763,798 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381697,855,209 - 97,925,795 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1697,855,209 - 97,962,598 (-)Ensemblmm10GRCm38
MGSCv371698,076,816 - 98,144,243 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361698,013,678 - 98,077,513 (-)NCBIMGSCv36mm8
Celera1698,906,746 - 98,974,176 (-)NCBICelera
Cytogenetic Map16C4NCBI
cM Map1657.7NCBI
C2cd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540739,618,252 - 39,663,885 (+)Ensembl
ChiLan1.0NW_00495540739,627,435 - 39,665,156 (+)NCBIChiLan1.0ChiLan1.0
C2CD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22237,955,896 - 38,024,803 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12132,810,088 - 32,879,014 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02128,208,474 - 28,277,366 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12141,532,070 - 41,600,080 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2141,532,070 - 41,600,084 (-)EnsemblpanPan2panpan1.1
C2CD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13136,291,853 - 36,355,472 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3136,274,539 - 36,348,657 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3135,443,826 - 35,500,709 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03135,808,806 - 35,866,037 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3135,811,676 - 35,867,188 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13135,702,724 - 35,759,690 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03135,682,219 - 35,739,124 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03136,176,757 - 36,234,044 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
C2cd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497135,544,860 - 35,596,401 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365001,871,416 - 1,923,070 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365001,870,419 - 1,922,963 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C2CD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13205,246,716 - 205,313,717 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.113205,248,991 - 205,313,868 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213215,572,982 - 215,639,714 (-)NCBISscrofa10.2Sscrofa10.2susScr3
C2CD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1285,769,419 - 85,837,269 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl285,766,996 - 85,837,182 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605413,627,878 - 13,698,203 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
C2cd2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474528,346,570 - 28,389,961 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474528,346,470 - 28,393,529 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
C2cd2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1446,622,122 - 46,681,072 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in C2cd2
217 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:376
Count of miRNA genes:230
Interacting mature miRNAs:279
Transcripts:ENSRNOT00000002209
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)112252474682951192Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)114644316891443168Rat
1598841Memor7Memory QTL 7exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)113330600878306008Rat
1598811Bp291Blood pressure QTL 2911.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113330600878306008Rat
634339Niddm50Non-insulin dependent diabetes mellitus QTL 503.32blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)111080612555806125Rat
634341Bw121Body weight QTL 1213.56abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)113532319955805892Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113294306789836615Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)112995899657754989Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)113191546976915469Rat
2290451Scl58Serum cholesterol level QTL 583.48blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)112631803155806125Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)113642841681428416Rat
1600394Edcs1Endometrial carcinoma susceptibility QTL12.90.04uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)111282315257823152Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)113461876079618760Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112019354996351019Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)113674945981749459Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)113674945981749459Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
631510Spl2Serum phospholipid level QTL 24.1blood phospholipid amount (VT:0006084)serum phospholipid level (CMO:0001171)112755668572556685Rat

Markers in Region
RH131278  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21137,229,019 - 37,229,200 (+)MAPPERmRatBN7.2
Rnor_6.01138,358,445 - 38,358,625NCBIRnor6.0
Rnor_5.01141,868,308 - 41,868,488UniSTSRnor5.0
RGSC_v3.41137,874,391 - 37,874,571UniSTSRGSC3.4
Celera1137,113,374 - 37,113,554UniSTS
RH 3.4 Map11263.71UniSTS
Cytogenetic Map11q12UniSTS
RH132334  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21137,228,191 - 37,228,379 (+)MAPPERmRatBN7.2
Rnor_6.01138,357,617 - 38,357,804NCBIRnor6.0
Rnor_5.01141,867,480 - 41,867,667UniSTSRnor5.0
RGSC_v3.41137,873,563 - 37,873,750UniSTSRGSC3.4
Celera1137,112,546 - 37,112,733UniSTS
RH 3.4 Map11280.3UniSTS
Cytogenetic Map11q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
21 13 80 210 91 90 59 148 59 6 464 270 21 189 106 121 31 34 34

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_199391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010055959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC062389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000002209   ⟹   ENSRNOP00000002209
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1150,697,358 - 50,759,016 (-)Ensembl
mRatBN7.2 Ensembl1137,228,000 - 37,289,664 (-)Ensembl
Rnor_6.0 Ensembl1138,357,424 - 38,420,032 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000080681   ⟹   ENSRNOP00000068956
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1150,708,292 - 50,759,016 (-)Ensembl
mRatBN7.2 Ensembl1137,238,933 - 37,289,664 (-)Ensembl
Rnor_6.0 Ensembl1138,366,204 - 38,420,119 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093979   ⟹   ENSRNOP00000089092
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1150,694,695 - 50,759,016 (-)Ensembl
mRatBN7.2 Ensembl1137,227,415 - 37,289,664 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104065   ⟹   ENSRNOP00000078458
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1150,697,358 - 50,758,782 (-)Ensembl
mRatBN7.2 Ensembl1137,227,999 - 37,289,739 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000128416   ⟹   ENSRNOP00000106056
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1150,694,563 - 50,759,016 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000150619   ⟹   ENSRNOP00000105471
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1150,697,995 - 50,759,016 (-)Ensembl
RefSeq Acc Id: NM_199391   ⟹   NP_955423
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81150,697,357 - 50,759,016 (-)NCBI
mRatBN7.21137,227,998 - 37,289,652 (-)NCBI
Rnor_6.01138,357,423 - 38,420,032 (-)NCBI
Rnor_5.01141,867,286 - 41,929,981 (-)NCBI
RGSC_v3.41137,873,369 - 37,935,054 (-)RGD
Celera1137,112,352 - 37,174,079 (-)RGD
Sequence:
RefSeq Acc Id: XM_008768572   ⟹   XP_008766794
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81150,694,680 - 50,759,096 (-)NCBI
mRatBN7.21137,225,321 - 37,289,741 (-)NCBI
Rnor_6.01138,354,746 - 38,420,133 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008768573   ⟹   XP_008766795
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81150,694,680 - 50,759,096 (-)NCBI
mRatBN7.21137,225,321 - 37,289,741 (-)NCBI
Rnor_6.01138,354,746 - 38,420,133 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008768576   ⟹   XP_008766798
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81150,694,680 - 50,758,648 (-)NCBI
mRatBN7.21137,225,321 - 37,289,278 (-)NCBI
Rnor_6.01138,354,746 - 38,419,615 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008768577   ⟹   XP_008766799
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81150,694,680 - 50,758,652 (-)NCBI
mRatBN7.21137,225,321 - 37,289,288 (-)NCBI
Rnor_6.01138,354,746 - 38,419,608 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008768578   ⟹   XP_008766800
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81150,694,680 - 50,758,469 (-)NCBI
mRatBN7.21137,225,321 - 37,289,103 (-)NCBI
Rnor_6.01138,354,746 - 38,419,531 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598013   ⟹   XP_017453502
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81150,694,680 - 50,759,096 (-)NCBI
mRatBN7.21137,229,496 - 37,289,741 (-)NCBI
Rnor_6.01138,358,966 - 38,420,133 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598014   ⟹   XP_017453503
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81150,694,680 - 50,754,415 (-)NCBI
mRatBN7.21137,225,321 - 37,285,042 (-)NCBI
Rnor_6.01138,354,746 - 38,419,083 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039088395   ⟹   XP_038944323
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81150,699,030 - 50,759,096 (-)NCBI
mRatBN7.21137,229,672 - 37,289,741 (-)NCBI
RefSeq Acc Id: XM_039088396   ⟹   XP_038944324
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81150,694,680 - 50,759,079 (-)NCBI
mRatBN7.21137,225,321 - 37,289,741 (-)NCBI
RefSeq Acc Id: XM_039088398   ⟹   XP_038944326
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81150,694,680 - 50,728,754 (-)NCBI
mRatBN7.21137,225,321 - 37,261,540 (-)NCBI
RefSeq Acc Id: XR_010055959
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81150,716,090 - 50,759,096 (-)NCBI
RefSeq Acc Id: NP_955423   ⟸   NM_199391
- UniProtKB: Q6P691 (UniProtKB/TrEMBL),   A6IQH6 (UniProtKB/TrEMBL),   A0A8I5ZML0 (UniProtKB/TrEMBL),   F7F9E0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766795   ⟸   XM_008768573
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZML0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766794   ⟸   XM_008768572
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZML0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766798   ⟸   XM_008768576
- Peptide Label: isoform X6
- UniProtKB: A0A8I5ZML0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766799   ⟸   XM_008768577
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZML0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766800   ⟸   XM_008768578
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZML0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453503   ⟸   XM_017598014
- Peptide Label: isoform X6
- UniProtKB: A0A8I5ZML0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453502   ⟸   XM_017598013
- Peptide Label: isoform X5
- UniProtKB: A0A0G2JU40 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000068956   ⟸   ENSRNOT00000080681
Ensembl Acc Id: ENSRNOP00000002209   ⟸   ENSRNOT00000002209
RefSeq Acc Id: XP_038944324   ⟸   XM_039088396
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZML0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944326   ⟸   XM_039088398
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038944323   ⟸   XM_039088395
- Peptide Label: isoform X3
- UniProtKB: A0A0G2JU40 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000089092   ⟸   ENSRNOT00000093979
Ensembl Acc Id: ENSRNOP00000078458   ⟸   ENSRNOT00000104065
Ensembl Acc Id: ENSRNOP00000106056   ⟸   ENSRNOT00000128416
Ensembl Acc Id: ENSRNOP00000105471   ⟸   ENSRNOT00000150619
Protein Domains
C2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6P691-F1-model_v2 AlphaFold Q6P691 1-696 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698096
Promoter ID:EPDNEW_R8621
Type:multiple initiation site
Name:C2cd2_1
Description:C2 calcium-dependent domain containing 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01138,420,087 - 38,420,147EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:735112 AgrOrtholog
BioCyc Gene G2FUF-21670 BioCyc
Ensembl Genes ENSRNOG00000001621 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000002209 ENTREZGENE
  ENSRNOT00000002209.7 UniProtKB/TrEMBL
  ENSRNOT00000080681.3 UniProtKB/TrEMBL
  ENSRNOT00000093979.2 UniProtKB/TrEMBL
  ENSRNOT00000104065.2 UniProtKB/TrEMBL
  ENSRNOT00000128416 ENTREZGENE
  ENSRNOT00000128416.1 UniProtKB/TrEMBL
  ENSRNOT00000150619 ENTREZGENE
  ENSRNOT00000150619.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.150 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:5620907 IMAGE-MGC_LOAD
InterPro C2_dom UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  C2CD2/C2CD2L UniProtKB/TrEMBL
  SMP_C2CD2L UniProtKB/TrEMBL
KEGG Report rno:304055 UniProtKB/TrEMBL
MGC_CLONE MGC:72630 IMAGE-MGC_LOAD
NCBI Gene 304055 ENTREZGENE
PANTHER C2 DOMAIN-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
  PTHR21119 UniProtKB/TrEMBL
Pfam PF00168 UniProtKB/TrEMBL
  SMP_C2CD2L UniProtKB/TrEMBL
PhenoGen C2cd2 PhenoGen
PROSITE PS50004 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000001621 RatGTEx
Superfamily-SCOP SSF49562 UniProtKB/TrEMBL
UniProt A0A0G2JU40 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZML0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A9G0_RAT UniProtKB/TrEMBL
  A0ABK0L7D7_RAT UniProtKB/TrEMBL
  A0ABK0LXA0_RAT UniProtKB/TrEMBL
  A6IQH6 ENTREZGENE, UniProtKB/TrEMBL
  F7F9E0 ENTREZGENE, UniProtKB/TrEMBL
  Q6P691 ENTREZGENE
UniProt Secondary Q6P691 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-05-07 C2cd2  C2 calcium-dependent domain containing 2  RGD735112  similar to RIKEN cDNA 5830404H04  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-11-17 RGD735112  similar to RIKEN cDNA 5830404H04      Symbol updated 1299863 APPROVED
2005-09-30 MGC72630        Symbol and Name status set to provisional 70820 PROVISIONAL