Babam2 (BRISC and BRCA1 A complex member 2) - Rat Genome Database

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Gene: Babam2 (BRISC and BRCA1 A complex member 2) Rattus norvegicus
Analyze
Symbol: Babam2
Name: BRISC and BRCA1 A complex member 2
RGD ID: 735111
Description: Predicted to enable polyubiquitin modification-dependent protein binding activity and tumor necrosis factor receptor binding activity. Predicted to be involved in several processes, including cellular response to ionizing radiation; mitotic G2 DNA damage checkpoint signaling; and positive regulation of DNA repair. Predicted to be located in cytoplasm and nucleus. Predicted to be part of BRCA1-A complex; BRISC complex; and nuclear ubiquitin ligase complex. Orthologous to human BABAM2 (BRISC and BRCA1 A complex member 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: brain and reproductive organ-expressed (TNFRSF1A modulator); brain and reproductive organ-expressed protein; BRCA1-A complex subunit BRE; BRCA1/BRCA2-containing complex subunit 45; Bre; BRISC and BRCA1-A complex member 2; LOC362704
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8630,089,065 - 30,467,508 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl630,071,611 - 30,467,341 (-)EnsemblGRCr8
mRatBN7.2624,369,021 - 24,788,416 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl624,369,022 - 24,833,951 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx624,668,565 - 25,048,192 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0624,984,452 - 25,364,083 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0624,473,585 - 24,843,247 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0625,666,654 - 26,135,888 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl625,666,655 - 26,051,229 (-)Ensemblrn6Rnor6.0
Rnor_5.0635,490,053 - 35,875,866 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4624,406,837 - 24,791,918 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera623,862,750 - 24,241,551 (-)NCBICelera
RGSC_v3.1624,409,789 - 24,794,871 (-)NCBI
Cytogenetic Map6q14NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-fluoro-2,4-dinitrobenzene  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2,4-dinitrotoluene  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
4-hydroxynon-2-enal  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
biochanin A  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
diazinon  (EXP)
Dibutyl phosphate  (ISO)
dicrotophos  (ISO)
dieldrin  (EXP)
epoxiconazole  (ISO)
fenvalerate  (EXP)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
genistein  (EXP)
glycidyl methacrylate  (ISO)
hydrogen peroxide  (ISO)
ivermectin  (ISO)
Lasiocarpine  (ISO)
leflunomide  (EXP)
Methylazoxymethanol acetate  (EXP)
monocrotaline  (ISO)
N,N-diethyl-m-toluamide  (EXP)
O-methyleugenol  (ISO)
p-menthan-3-ol  (ISO)
paracetamol  (ISO)
PCB138  (ISO)
permethrin  (EXP)
riddelliine  (ISO)
rotenone  (ISO)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
theophylline  (ISO)
thioacetamide  (EXP)
triphenyl phosphate  (ISO)
urethane  (ISO)
usnic acid  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
BRCA1-A complex  (IBA,IEA,ISO,ISS)
BRISC complex  (IEA,ISO,ISS)
cytoplasm  (IEA,ISO,ISS)
cytosol  (IEA,ISO)
nuclear ubiquitin ligase complex  (IEA,ISO,ISS)
nucleus  (IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:7826398   PMID:9737713   PMID:14636569   PMID:15465831   PMID:15489334   PMID:17525341   PMID:19214193   PMID:19261746   PMID:19261748   PMID:19261749   PMID:24075985  


Genomics

Comparative Map Data
Babam2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8630,089,065 - 30,467,508 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl630,071,611 - 30,467,341 (-)EnsemblGRCr8
mRatBN7.2624,369,021 - 24,788,416 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl624,369,022 - 24,833,951 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx624,668,565 - 25,048,192 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0624,984,452 - 25,364,083 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0624,473,585 - 24,843,247 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0625,666,654 - 26,135,888 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl625,666,655 - 26,051,229 (-)Ensemblrn6Rnor6.0
Rnor_5.0635,490,053 - 35,875,866 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4624,406,837 - 24,791,918 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera623,862,750 - 24,241,551 (-)NCBICelera
RGSC_v3.1624,409,789 - 24,794,871 (-)NCBI
Cytogenetic Map6q14NCBI
BABAM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38227,888,709 - 28,338,901 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl227,888,667 - 28,338,901 (+)Ensemblhg38GRCh38
GRCh37228,111,576 - 28,561,768 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36227,966,986 - 28,415,272 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34228,025,132 - 28,473,416NCBI
Celera227,958,500 - 28,406,802 (+)NCBICelera
Cytogenetic Map2p23.2NCBI
HuRef227,854,307 - 28,301,995 (+)NCBIHuRef
CHM1_1228,044,115 - 28,492,521 (+)NCBICHM1_1
T2T-CHM13v2.0227,931,830 - 28,382,185 (+)NCBIT2T-CHM13v2.0
Babam2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39531,855,394 - 32,242,083 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl531,855,028 - 32,242,306 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38531,697,978 - 32,084,950 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl531,697,684 - 32,084,962 (+)Ensemblmm10GRCm38
MGSCv37532,000,423 - 32,387,112 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36531,974,631 - 32,361,320 (+)NCBIMGSCv36mm8
Celera529,176,721 - 29,556,517 (+)NCBICelera
Cytogenetic Map5B1NCBI
cM Map517.27NCBI
Babam2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554699,831,488 - 10,246,899 (+)Ensembl
ChiLan1.0NW_0049554699,831,488 - 10,246,631 (+)NCBIChiLan1.0ChiLan1.0
BABAM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21298,175,541 - 98,629,202 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A98,179,513 - 98,633,172 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A27,884,907 - 28,338,302 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A27,970,968 - 28,420,907 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A27,974,917 - 28,420,519 (+)EnsemblpanPan2panpan1.1
BABAM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11721,886,127 - 22,288,513 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1721,889,862 - 22,288,504 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1721,679,521 - 22,084,070 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01722,446,454 - 22,852,029 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1722,447,269 - 22,851,961 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11721,748,114 - 22,151,817 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01721,799,373 - 22,203,815 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01721,913,671 - 22,320,313 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Babam2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629266,034,063 - 66,464,102 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364934,375,393 - 4,768,399 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364934,375,393 - 4,863,050 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BABAM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3110,897,256 - 111,328,385 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.13110,897,250 - 111,328,414 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23118,002,748 - 118,129,321 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BABAM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11479,277,238 - 79,732,996 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1479,289,043 - 79,732,891 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604532,412,927 - 32,865,505 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Babam2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247389,914,314 - 10,323,610 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247389,910,963 - 10,322,917 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Babam2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1722,080,897 - 22,463,300 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Babam2
1562 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:41
Count of miRNA genes:35
Interacting mature miRNAs:41
Transcripts:ENSRNOT00000005855
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6197587946975879Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6197587946975879Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6144788383Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6197587946975879Rat
2292616Ept15Estrogen-induced pituitary tumorigenesis QTL 154.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6144788383Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6197587946975879Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
8552910Pigfal5Plasma insulin-like growth factor 1 level QTL 54.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)62265388967653889Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6186868070Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6323998948239989Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6323998948239989Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6140163351Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)61459947363457687Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6323998948239989Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)61608937261967788Rat
1358190Ept1Estrogen-induced pituitary tumorigenesis QTL 14.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6144788383Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6323998948239989Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6197587946975879Rat
1359023Bp272Blood pressure QTL 2722.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)62228825732981219Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)62228825767288257Rat

Markers in Region
D6Rat157  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8630,090,810 - 30,091,017 (+)Marker Load Pipeline
mRatBN7.2624,370,766 - 24,370,973 (+)MAPPERmRatBN7.2
Rnor_6.0625,668,400 - 25,668,606NCBIRnor6.0
Rnor_5.0635,491,799 - 35,492,005UniSTSRnor5.0
RGSC_v3.4624,408,581 - 24,408,788RGDRGSC3.4
RGSC_v3.4624,408,582 - 24,408,788UniSTSRGSC3.4
Celera623,864,495 - 23,864,701UniSTS
RGSC_v3.1624,411,366 - 24,411,752RGD
FHH x ACI Map622.72UniSTS
FHH x ACI Map622.72RGD
Cytogenetic Map6q13UniSTS
D6Rat178  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8630,450,734 - 30,450,977 (+)Marker Load Pipeline
mRatBN7.2624,730,737 - 24,730,980 (+)MAPPERmRatBN7.2
Rnor_6.0626,034,623 - 26,034,865NCBIRnor6.0
Rnor_5.0635,858,936 - 35,859,178UniSTSRnor5.0
RGSC_v3.4624,775,311 - 24,775,554RGDRGSC3.4
RGSC_v3.4624,775,312 - 24,775,554UniSTSRGSC3.4
Celera624,224,945 - 24,225,187UniSTS
RGSC_v3.1624,778,264 - 24,778,507RGD
FHH x ACI Map622.72UniSTS
FHH x ACI Map622.72RGD
Cytogenetic Map6q13UniSTS
D6Got301  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2624,667,954 - 24,668,055 (+)MAPPERmRatBN7.2
Rnor_6.0625,965,915 - 25,966,015NCBIRnor6.0
Rnor_5.0635,789,262 - 35,789,362UniSTSRnor5.0
RGSC_v3.4624,710,233 - 24,710,333UniSTSRGSC3.4
Celera624,161,523 - 24,161,623UniSTS
Cytogenetic Map6q13UniSTS
RH130268  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2624,369,124 - 24,369,324 (+)MAPPERmRatBN7.2
Rnor_6.0625,666,758 - 25,666,957NCBIRnor6.0
Rnor_5.0635,490,157 - 35,490,356UniSTSRnor5.0
RGSC_v3.4624,406,940 - 24,407,139UniSTSRGSC3.4
Celera623,862,853 - 23,863,052UniSTS
Cytogenetic Map6q13UniSTS
BI302086  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2624,493,058 - 24,493,229 (+)MAPPERmRatBN7.2
Rnor_6.0625,790,742 - 25,790,912NCBIRnor6.0
Rnor_5.0635,614,328 - 35,614,498UniSTSRnor5.0
RGSC_v3.4624,533,023 - 24,533,193UniSTSRGSC3.4
Celera623,986,856 - 23,987,026UniSTS
RH 3.4 Map6118.38UniSTS
Cytogenetic Map6q13UniSTS
BE100943  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2624,389,195 - 24,389,346 (+)MAPPERmRatBN7.2
Rnor_6.0625,687,014 - 25,687,164NCBIRnor6.0
Rnor_5.0635,510,413 - 35,510,563UniSTSRnor5.0
RGSC_v3.4624,427,011 - 24,427,161UniSTSRGSC3.4
Celera623,882,888 - 23,883,038UniSTS
RH 3.4 Map689.0UniSTS
Cytogenetic Map6q13UniSTS
Kcmf1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2624,368,731 - 24,369,194 (+)MAPPERmRatBN7.2
Rnor_6.0625,666,365 - 25,666,827NCBIRnor6.0
Rnor_5.0635,489,764 - 35,490,226UniSTSRnor5.0
Celera623,862,460 - 23,862,922UniSTS
Cytogenetic Map6q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000005855   ⟹   ENSRNOP00000005855
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl630,071,611 - 30,467,341 (-)Ensembl
mRatBN7.2 Ensembl624,369,022 - 24,747,411 (-)Ensembl
Rnor_6.0 Ensembl625,666,655 - 26,051,229 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000101187   ⟹   ENSRNOP00000077529
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl630,101,386 - 30,467,341 (-)Ensembl
mRatBN7.2 Ensembl624,439,083 - 24,833,951 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111673   ⟹   ENSRNOP00000077931
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl630,089,066 - 30,467,341 (-)Ensembl
mRatBN7.2 Ensembl624,369,024 - 24,747,389 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116481   ⟹   ENSRNOP00000088211
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl630,109,020 - 30,467,341 (-)Ensembl
mRatBN7.2 Ensembl624,388,976 - 24,747,389 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000144524   ⟹   ENSRNOP00000110748
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl630,088,197 - 30,467,341 (-)Ensembl
RefSeq Acc Id: NM_199270   ⟹   NP_954891
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8630,089,066 - 30,467,341 (-)NCBI
mRatBN7.2624,369,022 - 24,747,345 (-)NCBI
Rnor_6.0625,666,655 - 26,051,229 (-)NCBI
Rnor_5.0635,490,053 - 35,875,866 (-)NCBI
RGSC_v3.4624,406,837 - 24,791,918 (-)RGD
Celera623,862,750 - 24,241,551 (-)RGD
Sequence:
RefSeq Acc Id: XM_006239802   ⟹   XP_006239864
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8630,089,065 - 30,467,418 (-)NCBI
mRatBN7.2624,369,021 - 24,747,422 (-)NCBI
Rnor_6.0625,666,654 - 26,051,270 (-)NCBI
Rnor_5.0635,490,053 - 35,875,866 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039112461   ⟹   XP_038968389
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8630,089,065 - 30,467,508 (-)NCBI
mRatBN7.2624,369,021 - 24,747,397 (-)NCBI
RefSeq Acc Id: XM_039112463   ⟹   XP_038968391
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8630,089,065 - 30,410,715 (-)NCBI
mRatBN7.2624,369,021 - 24,690,715 (-)NCBI
RefSeq Acc Id: XM_039112464   ⟹   XP_038968392
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8630,089,065 - 30,467,428 (-)NCBI
mRatBN7.2624,369,021 - 24,747,431 (-)NCBI
RefSeq Acc Id: XM_039112465   ⟹   XP_038968393
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8630,089,065 - 30,463,525 (-)NCBI
mRatBN7.2624,369,021 - 24,743,541 (-)NCBI
RefSeq Acc Id: XM_039112468   ⟹   XP_038968396
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8630,089,065 - 30,368,365 (-)NCBI
mRatBN7.2624,369,021 - 24,648,364 (-)NCBI
RefSeq Acc Id: XM_063262050   ⟹   XP_063118120
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8630,089,065 - 30,467,508 (-)NCBI
RefSeq Acc Id: XR_010052101
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8630,334,843 - 30,434,764 (-)NCBI
RefSeq Acc Id: XR_010052102
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8630,160,234 - 30,467,428 (-)NCBI
RefSeq Acc Id: NP_954891   ⟸   NM_199270
- UniProtKB: Q6P7Q1 (UniProtKB/Swiss-Prot),   A6HA33 (UniProtKB/TrEMBL),   A0A8I6A9B7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239864   ⟸   XM_006239802
- Peptide Label: isoform X1
- UniProtKB: Q6P7Q1 (UniProtKB/Swiss-Prot),   A6HA33 (UniProtKB/TrEMBL),   A0A8I6A9B7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000005855   ⟸   ENSRNOT00000005855
RefSeq Acc Id: XP_038968392   ⟸   XM_039112464
- Peptide Label: isoform X3
- UniProtKB: A0A8I5Y9T9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968389   ⟸   XM_039112461
- Peptide Label: isoform X1
- UniProtKB: Q6P7Q1 (UniProtKB/Swiss-Prot),   A6HA33 (UniProtKB/TrEMBL),   A0A8I6A9B7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968393   ⟸   XM_039112465
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038968391   ⟸   XM_039112463
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038968396   ⟸   XM_039112468
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000077931   ⟸   ENSRNOT00000111673
Ensembl Acc Id: ENSRNOP00000077529   ⟸   ENSRNOT00000101187
Ensembl Acc Id: ENSRNOP00000088211   ⟸   ENSRNOT00000116481
RefSeq Acc Id: XP_063118120   ⟸   XM_063262050
- Peptide Label: isoform X3
- UniProtKB: A0A8I5Y9T9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000110748   ⟸   ENSRNOT00000144524

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6P7Q1-F1-model_v2 AlphaFold Q6P7Q1 1-383 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694428
Promoter ID:EPDNEW_R4953
Type:initiation region
Name:Babam2_1
Description:BRISC and BRCA1 A complex member 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0626,051,257 - 26,051,317EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:735111 AgrOrtholog
BioCyc Gene G2FUF-38371 BioCyc
Ensembl Genes ENSRNOG00000004364 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000005855 ENTREZGENE
  ENSRNOT00000005855.5 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6887072 IMAGE-MGC_LOAD
InterPro BRE UniProtKB/Swiss-Prot
KEGG Report rno:362704 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72967 IMAGE-MGC_LOAD
NCBI Gene 362704 ENTREZGENE
PANTHER BRISC AND BRCA1-A COMPLEX MEMBER 2 UniProtKB/Swiss-Prot
  PTHR15189 UniProtKB/Swiss-Prot
Pfam BRE UniProtKB/Swiss-Prot
PhenoGen Babam2 PhenoGen
RatGTEx ENSRNOG00000004364 RatGTEx
UniProt A0A8I5Y7V2_RAT UniProtKB/TrEMBL
  A0A8I5Y9T9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A9B7 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0M5A9_RAT UniProtKB/TrEMBL
  A6HA33 ENTREZGENE, UniProtKB/TrEMBL
  BABA2_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-04-05 Babam2  BRISC and BRCA1 A complex member 2  Bre  brain and reproductive organ-expressed (TNFRSF1A modulator)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-01-14 Bre  brain and reproductive organ-expressed (TNFRSF1A modulator)  Bre  brain and reproductive organ-expressed protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-08 Bre  brain and reproductive organ-expressed protein  LOC362704    Symbol updated 1299863 APPROVED