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Gene: Tp53inp2 (tumor protein p53 inducible nuclear protein 2) Rattus norvegicus

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Symbol:

Tp53inp2

Name:

tumor protein p53 inducible nuclear protein 2

RGD ID:

735085

Description:

Predicted to enable ubiquitin binding activity. Predicted to be involved in autophagosome assembly and positive regulation of DNA-templated transcription. Predicted to act upstream of or within several processes, including osteoblast differentiation; tissue homeostasis; and ubiquitin-dependent protein catabolic process. Predicted to be located in cytosol. Predicted to be active in autophagosome and nucleus. Orthologous to human TP53INP2 (tumor protein p53 inducible nuclear protein 2); INTERACTS WITH (+)-schisandrin B; 1,2-dimethylhydrazine; 17beta-estradiol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

diabetes and obesity-regulated; LOC362246; Trp53inp2; tumor protein p53-inducible nuclear protein 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	164,341,618 - 164,350,270 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	164,343,205 - 164,350,225 (+)	Ensembl				GRCr8
mRatBN7.2	3	143,881,427 - 143,890,104 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	143,882,021 - 143,890,097 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	147,748,945 - 147,756,921 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	156,366,216 - 156,374,192 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	154,105,748 - 154,113,724 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	150,910,398 - 150,918,525 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	150,910,398 - 150,918,525 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	157,278,515 - 157,286,642 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	145,878,005 - 145,886,088 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	142,607,828 - 142,615,961 (+)	NCBI		Celera
RGSC_v3.1	3	145,783,626 - 145,788,521 (+)	NCBI
Cytogenetic Map	3	q41	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (EXP,ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dinitrotoluene (EXP)

2-palmitoylglycerol (ISO)

3-methylcholanthrene (ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

actinomycin D (ISO)

aflatoxin B1 (ISO)

amitrole (EXP)

ammonium chloride (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzene (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (EXP)

bisphenol F (EXP)

C60 fullerene (EXP)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

calcitriol (ISO)

camptothecin (ISO)

capsaicin (ISO)

captan (ISO)

carbon nanotube (ISO)

chlordecone (ISO)

clofibrate (ISO)

cobalt dichloride (EXP)

cocaine (ISO)

copper atom (ISO)

copper(0) (ISO)

coumestrol (ISO)

crocidolite asbestos (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

DDE (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

dicrotophos (ISO)

diethylstilbestrol (ISO)

dioxygen (ISO)

diuron (EXP)

Doramectin (EXP)

endosulfan (EXP)

epoxiconazole (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

fenthion (ISO)

flutamide (EXP)

folic acid (ISO)

folpet (ISO)

formaldehyde (ISO)

genistein (ISO)

gentamycin (EXP)

hexadecanoic acid (ISO)

inulin (ISO)

lipopolysaccharide (ISO)

methapyrilene (EXP)

methidathion (ISO)

methimazole (EXP)

methyl methanesulfonate (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N-methyl-4-phenylpyridinium (EXP)

nefazodone (EXP)

nickel atom (ISO)

Nutlin-3 (ISO)

okadaic acid (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

parathion (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

resorcinol (ISO)

rotenone (EXP)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium dichromate (EXP,ISO)

sunitinib (ISO)

temozolomide (ISO)

Tesaglitazar (EXP)

testosterone (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

topotecan (EXP)

tributylstannane (EXP)

triphenyl phosphate (ISO)

tunicamycin (ISO)

valproic acid (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

autophagosome assembly (IBA,IEA,ISO,ISS)

autophagy (IEA)

DNA-templated transcription (IEA)

positive regulation of DNA-templated transcription (IBA,IEA,ISO,ISS)

Cellular Component

autophagosome (IBA,IEA,ISO,ISS)

cytoplasmic vesicle (IEA)

cytosol (IEA,ISO,ISS)

nucleus (IBA,IEA,ISO,ISS)

PML body (IEA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	CDC91L1 (PIG-U) is a newly discovered oncogene in human bladder cancer.	Guo Z, etal., Nat Med 2004 Apr;10(4):374-81. Epub 2004 Mar 14.
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:19056683	PMID:21467300	PMID:22470510	PMID:23728790	PMID:24713655	PMID:28235788	PMID:30853298	PMID:36933242

Genomics

Comparative Map Data

Tp53inp2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	164,341,618 - 164,350,270 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	164,343,205 - 164,350,225 (+)	Ensembl				GRCr8
mRatBN7.2	3	143,881,427 - 143,890,104 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	143,882,021 - 143,890,097 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	147,748,945 - 147,756,921 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	156,366,216 - 156,374,192 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	154,105,748 - 154,113,724 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	150,910,398 - 150,918,525 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	150,910,398 - 150,918,525 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	157,278,515 - 157,286,642 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	145,878,005 - 145,886,088 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	142,607,828 - 142,615,961 (+)	NCBI		Celera
RGSC_v3.1	3	145,783,626 - 145,788,521 (+)	NCBI
Cytogenetic Map	3	q41	NCBI

TP53INP2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	34,704,344 - 34,713,436 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	34,701,662 - 34,713,439 (+)	Ensembl			hg38	GRCh38
GRCh37	20	33,292,148 - 33,301,240 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	32,755,809 - 32,764,898 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	20	32,755,808 - 32,764,898	NCBI
Celera	20	30,041,236 - 30,050,322 (+)	NCBI		Celera
Cytogenetic Map	20	q11.22	NCBI
HuRef	20	30,071,142 - 30,080,228 (+)	NCBI		HuRef
CHM1_1	20	33,193,630 - 33,202,719 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	36,425,010 - 36,434,099 (+)	NCBI		T2T-CHM13v2.0

Trp53inp2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	155,223,742 - 155,231,767 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	155,222,979 - 155,231,770 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	155,381,811 - 155,389,847 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	155,381,059 - 155,389,850 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	155,207,592 - 155,215,583 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	155,073,297 - 155,081,288 (+)	NCBI		MGSCv36	mm8
Celera	2	161,314,382 - 161,322,371 (+)	NCBI		Celera
Cytogenetic Map	2	H1	NCBI
cM Map	2	77.26	NCBI

Tp53inp2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	26,640,239 - 26,649,291 (-)	Ensembl
ChiLan1.0	NW_004955422	26,640,239 - 26,649,291 (-)	NCBI	ChiLan1.0	ChiLan1.0

TP53INP2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	40,438,314 - 40,447,459 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	40,431,438 - 40,440,564 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	31,033,855 - 31,042,976 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	32,160,155 - 32,169,227 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	32,160,155 - 32,169,227 (+)	Ensembl			panPan2	panpan1.1

TP53INP2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	23,768,208 - 23,801,268 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	23,792,687 - 23,799,331 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	23,413,778 - 23,446,850 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	24,458,763 - 24,492,030 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	24,487,400 - 24,488,930 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	23,746,851 - 23,779,874 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	23,841,988 - 23,875,011 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	24,280,850 - 24,313,887 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Tp53inp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	172,756,985 - 172,765,507 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936561	5,984,079 - 5,992,536 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936561	5,984,044 - 5,992,536 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TP53INP2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	38,104,200 - 38,113,166 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	17	38,104,189 - 38,113,167 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	43,299,873 - 43,308,842 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TP53INP2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	39,002,619 - 39,011,751 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	39,007,023 - 39,008,613 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666050	87,821,995 - 87,831,175 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tp53inp2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624842	4,666,640 - 4,675,556 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624842	4,666,638 - 4,675,576 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Tp53inp2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	134,729,249 - 134,737,123 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Tp53inp2
59 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	56
Count of miRNA genes:	47
Interacting mature miRNAs:	55
Transcripts:	ENSRNOT00000055310
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
12879876	Bw182	Body weight QTL 182		0.003	body mass (VT:0001259)	body weight (CMO:0000012)	3	141555229	186555229	Rat
2301411	Bp320	Blood pressure QTL 320		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	141555229	186555229	Rat
1582233	Insul10	Insulin level QTL 10	5.4	0.0015	blood insulin amount (VT:0001560)	serum insulin level times blood glucose level (CMO:0002040)	3	133259579	178259579	Rat
12879872	Cm97	Cardiac mass QTL 97		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	141555229	186555229	Rat
12879873	Cm96	Cardiac mass QTL 96		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	141555229	186555229	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	151075912	189428310	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	129154923	182114333	Rat
12879874	Cm98	Cardiac mass QTL 98		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	141555229	186555229	Rat
12879875	Kidm64	Kidney mass QTL 64		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	141555229	186555229	Rat
1298068	Bp167	Blood pressure QTL 167		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	161492708	189428310	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	67641776	167835660	Rat
61335	Bp20	Blood pressure QTL 20	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	161799493	176036425	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	133134628	178134628	Rat
1331726	Bp208	Blood pressure QTL 208	3.129		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	161799270	187311134	Rat
1582213	Insul6	Insulin level QTL 6	3.7	0.0009	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
1300173	Rf11	Renal function QTL 11	3.38		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	141508991	166376254	Rat
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	152055202	189428310	Rat
10755461	Coatc16	Coat color QTL 16			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	3	142898802	187898802	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	145335553	189428310	Rat
2303620	Vencon4	Ventilatory control QTL 4	3.9		respiration trait (VT:0001943)	tidal volume (CMO:0000222)	3	125116475	170116475	Rat
1582256	Insul9	Insulin level QTL 9	4.4	0.0016	blood insulin amount (VT:0001560)	absolute change in serum insulin level (CMO:0002038)	3	155759447	189428310	Rat
1576306	Schws3	Schwannoma susceptibility QTL 3		0.001	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	3	139299381	184299381	Rat
5686842	Rf59	Renal function QTL 59			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	3	122395989	167395989	Rat
1300159	Kidm4	Kidney mass QTL 4	3.83		kidney mass (VT:0002707)	right kidney wet weight to body weight ratio (CMO:0001953)	3	141508991	177728348	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	131036586	176036586	Rat
631673	Iddm13	Insulin dependent diabetes mellitus QTL 13	1.3	0.663	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	3	137114333	182114333	Rat
1582248	Insul7	Insulin level QTL 7	3.9	0.0041	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	131036586	176036586	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	98651826	167012663	Rat
1578666	Vnigr1	Vascular neointimal growth QTL 1	4.6		artery morphology trait (VT:0002191)	artery lumen area (CMO:0001409)	3	151075912	189428310	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	151075912	189428310	Rat
12879871	Am7	Aortic mass QTL 7		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	141555229	186555229	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	144575244	189428310	Rat
2293087	Iddm27	Insulin dependent diabetes mellitus QTL 27	2.68		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	160357340	167835660	Rat

Markers in Region

RH128655

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	143,889,875 - 143,890,057 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	150,918,297 - 150,918,478	NCBI	Rnor6.0
Rnor_5.0	3	157,286,414 - 157,286,595	UniSTS	Rnor5.0
RGSC_v3.4	3	145,885,860 - 145,886,041	UniSTS	RGSC3.4
Celera	3	142,615,733 - 142,615,914	UniSTS
RH 3.4 Map	3	1305.7	UniSTS
Cytogenetic Map	3	q42	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001270947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003749598	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105489	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105490	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105491	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284178	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AJ297794	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474050	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000055310 ⟹ ENSRNOP00000052180

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	164,343,205 - 164,350,225 (+)	Ensembl
mRatBN7.2 Ensembl	3	143,882,021 - 143,890,097 (+)	Ensembl
Rnor_6.0 Ensembl	3	150,910,398 - 150,918,525 (+)	Ensembl

RefSeq Acc Id:

NM_001270947 ⟹ NP_001257876

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	164,342,137 - 164,350,270 (+)	NCBI
mRatBN7.2	3	143,881,970 - 143,890,104 (+)	NCBI
Rnor_6.0	3	150,910,398 - 150,918,525 (+)	NCBI
Rnor_5.0	3	157,278,515 - 157,286,642 (+)	NCBI
Celera	3	142,607,828 - 142,615,961 (+)	NCBI

Sequence:

show sequence

ACAATCAGCTGTTGAAGCGTTCGGATTTGTGCCCTGAGCCCCGGCTGCAGCGGCCGCAGCAGCT
CCGGGCGTCCGTTCGCGAGCCCCGCCGTCTCTCGGCCTGTCCCCGGTATGCAGCTCCGGTTGTG
AGCACCGGCGACCCGGGGACGCCCGGCCGCACAACTACCTCAGCGCAGCGGTTGCTGCAGCGGC
CCCAGGTCTTTGAACTGCCATAGGGCGCCCCCTTGAGGTTGCTTCACCCGCTGACCATGTTCCA
GCGCTTCACCAGCCTTTTCTTTAGCACCCCCGCACCTCCTGAAGACTCCAACTGTCCGGGGGCC
TTTGTCTCTGAGGAGGATGAAGTGGACGGCTGGCTCATCATTGACCTACAGGACAGCTATACAG
CTCCACCCGACCCCAGGGCCTCTCCTGCTCCTGCAGGCCGCCCCCCACCCGCGCCCTCCTTGAT
GGACGAGAGCTGGTTTGTTACCCCTCCCGCCTGTTTTACTGCAGAGGGGCCCGGCCTTGGGCCT
GCCCGCCTCCAGAGCAATCCCCTGGAGGACCTCCTCATTGAGCATCCCAGCATGTCCGTTTATG
TCACCGGCAGCACCATAGTGCTGGAGTCTGGGCCACCTTCCCCTCACCCTGAAGCTGCCTTGCC
TGATCAGGACCTCAGCGATGGAGAGCTGGCGCCTGCCCGCCGGGAGCCTAGGGCCCTGCACCAC
GCAGCTGCCCCTATGCCGGCTCGAGCTGTGCTGCTGGAGAAGGCTGGCCAGGTGCGGAGGCTGC
AGAGAGCCCGACAGCGCGCCGAGCGCCACACACTGAGTGCTAAAGTGTTGCAACGGCAGAATCG
CGCCCGGGAGAGCCGTTCGCGCCGGCCCAAGCACCAGGGCAGCTTCATTTACCAGCCGTGCCAG
CGCCAGTTCAACTACTGAGCGCCCCCGCTGCACCGCGAATCCCTCGTCGTCTCTTGGTCCCTTC
TGCCTCCTCTGTAGCAGCCAGTGTGCTGCTCAAGGGGTATTCAGGGTCCGCCCGCCTCCATCCG
GATACCACAACCTCCCTCCTTCCTAAGTTTTGAGGTGGGATGATGGCCCTCTACTTCCCTGTTT
CTGATCTAACTCACCTATTAACCTCTCTCATCCTCGTCCTCCCTCCCCAAGTGTCTGACTCACA
CTCCCCACGCCTCGTCTCCCATGCTTCCTTTTCAGACCCCTATTTCTGTCTCTCGCTCCTTCAC
TTTTTCCCTCTTAGCCCACCGGATTTCTAAGAGCCTCTCACACCCTGACCTGGCGCATTCTCCA
CTTTCAGCTCCTACTTTCCAAGACTTACTCTTCTCTGTTTGGGATCGCTCCCACTCCTGTTCCT
TTTTTTTTTTTCATTCCTGGCAATTCCCTCCCAATCCTGCAGGTACAGCCTGCCAGGCCTGGGC
CATTGTCCTTACCCTGCAGTCAGGGATCAGGCACGGTTTTGATTTCAGCTTTCCCCTTTTCTCT
GCCCTGGGGGCTGGGCTCCTTCTTGCTGCTTAGGCCTAGAAAGTTTAAGTATGTGGAAGAGGAC
GGTGAGTTGTAAGTTAGATAAGGTGAAGGGAATGGAGGGAAAAAAGCAGCCTATTGGGAGACTC
AGGCAGGGGCAGATGGGTTGAGAAGCAGAAGGGAGCAGGGCATCTTGAGAGCTGGCATTGTGCT
TGGTCAGAGGAGCTAAGCCCTGGTCTTAGGCCTGAGCCTGGAGTCTGCCCCCATTTCCTTTTCC
TATAATCCTGCCTTCCAGGTTTTTTTCCTGAAGTCTGTCCCTCTTCAGGAGTAACCCCTACCCA
TCCCCACCCCTGTGAGTCTGGAGTCCGAAGGGCTTGTACCTTGTCACCTTACCTTGACATGCCA
CCCCAGGAGTAGAAGCTGGGTAAGGCCCCAATATCCTGGCCATCTCTGTTCATATGCCCAAGGT
GCTAGAATTAGCTTAGGAGAGATGCAGGCCAGAGGGTTTGCAGGCAGGGAGAAGGACACCTTAC
CCCAAGGCAAGAATGCAGAGAGGCATGATGCTAAGGAGGAATTAATGATGCTAAGGAGGGATTA
TGGGGTAAAGCCGTCCCCAGACTGACAGTCCCCTGCCTTCATCTTGCCTCTGGCCTTATATTTC
ATACTCTGTTCAATATGGCTGGGGAATAAACACTCCTGGGTAGAGGAGGTCAGGAGCCTCAGTG
TCCAGATTCCCAAATTTTTCTTACAGAGATTCAGGGCCTTCAAGAGTCTTCTTAATGTTCTCCC
ACAGGGCTCTTTCTTTGAGTGCCCTATGATCCCTCTTCCCTTTCTAGTTAAATATCAGGAGTAA
GGAATTTCTTGGTTAGGACACAGGGATGGGGTAGCCAGCTTCTCCCTTCTTGTGGTGGGGCTCA
GACACCAGCAACAGCCTCTTGGGATGCCCCAAGTTGTCTCCAGTTCTTTCTAGCTGTCCTTTTT
TAAGTGTGTGCTCTTCCTTCCTTAAAACCCCTAGATTTCCTGTTACATACTAACACAGGTCTTC
CCTTTCACTCCAACCCCAGGTTTCAGGCCTCAGAGCCATGCTGGGGTTGGAGAAAACTGCATTC
CTATGAGGGTAAAAAGTAGCTGCCCTCTCTGACCCTTTCTTGCTAGGCTTCATGCGGGATGGGA
GAGGGTATCCCCAGGATGGGGACAGAGGAAGCCTGGCTAGGGCCTTCTAGCCCAATAAGCCAAA
CAGGAACTATAAGCAGATCAAAATCCTACACTAGCTTATTAGGGCCCTGTTAGTTGAAAACCTT
GTTGCTGTCCCAAGTTCTTCAGTTACAACCGAGTACACTTACTCTTCCAACTGTCCTAAGGGTC
ACTACCCAGCCAGCTTTGGATCTTCAGCACTTTTAAAAGCTGAAACTCCCTCTTGCCCTTCTTG
TCTATTCCTCACTGCCAGTTGGGGCCTAGGCTCAGTCCTGGGCAAATGCCCATGATCCTGCTGC
TGTGGGAAGTTTGATAGGGCATTTGGCTCAAATTTCAAAAGGCCTCGCTCCTGACCTGATTTCT
CGAAGCTCCAGTAGTTCTAGACCCCTCCAATCTCTCATCTGACTGGTTGCAAGGCTTATTTTTC
TTTTGTACTTTCCTATAGAGCATTTCTGTAGCATTTGAGTGTGGCGATATTTTTGTTGTGTGTA
GATTTCTAAGAACCAACACTACTCAGTCTCCTGCTAGTCTGACTCCTGAAGCATCAGACCTCGT
CATACGGTATTGACTGTGTATGTGCCTTTCACCTTGAGCATGCTTCAGGATTTTTTTTCTTAAA
CCACAGAACTTGAATACACAAGGGAACCAGAATTCACAAAGTCCTATGCAACCCTAGACAGGAG
GAGGTTAGAGAGTCTGTCTTGATTGGTGATTTCAGAGACCCTAGAGAAATTTGTACCAGTTTGT
ATTAATGTCAGTACTACCAGCACTTTGCCAAAACTAAGGATGTCAGAGGGACCTGTTTCTAGAG
TGAGTCCCAATTACATCAAAGGGCAACTTACAGCTTTCTCCAGTAAGTCTGAGTGGTTCTCTTG
AGCTGGTGTCACTTTCTAACCTTTGCCAGTCTAGCCCAGCAGGGCCCTGTGTGTGTGAGTGCAG
TTTGGTGCTGTTTTGGAGTATGCCTGCTCCCCAGCCTGGAACCCTCTCAGCAACTTGCTGGGAC
CTATAATGTCTTAGGTGCAACAAGGACCCTACCAGAGCTCCTGGGTGGCTTTCAAGATCCACGT
AGCTTTGTGTGAGGGGACTGAATGCAGACAAACCACAGCCTGCTTCAAATACCTTCTTTCCCTA
CCACCTAGTTCCAAATGGAACCAACAAGTTGAGTGCATCTCTGTTGGGTGTTTTGTGTTGAGAC
TGGCTGAAGTGAAAACTCTTTGACTGACCATGTTGTGATGTGTCGACAGACTCAAGGACACAAC
CACCTCGACCTGGTCATGTGGCATGCCTGTGTATGTGTGTAACAGGATTCTGAATGTTAGGTTG
TAATGCTATTCCTGTATGGGAGAAAAAAATAATATAAACAAATAAAAATCTATTTAAAGCACAT
TAA

hide sequence

RefSeq Acc Id:

XM_003749598 ⟹ XP_003749646

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	164,342,378 - 164,350,270 (+)	NCBI
mRatBN7.2	3	143,882,211 - 143,890,098 (+)	NCBI
Rnor_6.0	3	150,910,601 - 150,918,519 (+)	NCBI
Rnor_5.0	3	157,278,515 - 157,286,642 (+)	NCBI

Sequence:

show sequence

CCCGACCTCGGGGTTGGGGGCTCCGGGCACCCCCAGGACACGCCCTGCGCCCCCCTCTCCCGTT
CTTTGTCTGTCTCCGCCGGCGGCAGCCGGAGCTGCGTTCTTGGCTCCCTATTGGTTGCCCTAAG
CCGGTAGGCCATGACGTCGCGTTATTTGCATATGACATTGAGACGTCACCAAGGCCAGCCCCGC
CTTCCAGGCTTGCTTGGGTGCTTGTCCTCTGGTGACCCGGTGGGCGCTATGTTGTGCCCGGCCG
GTCGAGGGTTGAGAGACGCTGAAAGGCAAGCGAGACCCGAGGGCACTCGGCGGTTCCCCGAGCT
AATCTAGGGACTGAGGTCTTTGAACTGCCATAGGGCGCCCCCTTGAGGTTGCTTCACCCGCTGA
CCATGTTCCAGCGCTTCACCAGCCTTTTCTTTAGCACCCCCGCACCTCCTGAAGACTCCAACTG
TCCGGGGGCCTTTGTCTCTGAGGAGGATGAAGTGGACGGCTGGCTCATCATTGACCTACAGGAC
AGCTATACAGCTCCACCCGACCCCAGGGCCTCTCCTGCTCCTGCAGGCCGCCCCCCACCCGCGC
CCTCCTTGATGGACGAGAGCTGGTTTGTTACCCCTCCCGCCTGTTTTACTGCAGAGGGGCCCGG
CCTTGGGCCTGCCCGCCTCCAGAGCAATCCCCTGGAGGACCTCCTCATTGAGCATCCCAGCATG
TCCGTTTATGTCACCGGCAGCACCATAGTGCTGGAGTCTGGGCCACCTTCCCCTCACCCTGAAG
CTGCCTTGCCTGATCAGGACCTCAGCGATGGAGAGCTGGCGCCTGCCCGCCGGGAGCCTAGGGC
CCTGCACCACGCAGCTGCCCCTATGCCGGCTCGAGCTGTGCTGCTGGAGAAGGCTGGCCAGGTG
CGGAGGCTGCAGAGAGCCCGACAGCGCGCCGAGCGCCACACACTGAGTGCTAAAGTGTTGCAAC
GGCAGAATCGCGCCCGGGAGAGCCGTTCGCGCCGGCCCAAGCACCAGGGCAGCTTCATTTACCA
GCCGTGCCAGCGCCAGTTCAACTACTGAGCGCCCCCGCTGCACCGCGAATCCCTCGTCGTCTCT
TGGTCCCTTCTGCCTCCTCTGTAGCAGCCAGTGTGCTGCTCAAGGGGTATTCAGGGTCCGCCCG
CCTCCATCCGGATACCACAACCTCCCTCCTTCCTAAGTTTTGAGGTGGGATGATGGCCCTCTAC
TTCCCTGTTTCTGATCTAACTCACCTATTAACCTCTCTCATCCTCGTCCTCCCTCCCCAAGTGT
CTGACTCACACTCCCCACGCCTCGTCTCCCATGCTTCCTTTTCAGACCCCTATTTCTGTCTCTC
GCTCCTTCACTTTTTCCCTCTTAGCCCACCGGATTTCTAAGAGCCTCTCACACCCTGACCTGGC
GCATTCTCCACTTTCAGCTCCTACTTTCCAAGACTTACTCTTCTCTGTTTGGGATCGCTCCCAC
TCCTGTTCCTTTTTTTTTTTTCATTCCTGGCAATTCCCTCCCAATCCTGCAGGTACAGCCTGCC
AGGCCTGGGCCATTGTCCTTACCCTGCAGTCAGGGATCAGGCACGGTTTTGATTTCAGCTTTCC
CCTTTTCTCTGCCCTGGGGGCTGGGCTCCTTCTTGCTGCTTAGGCCTAGAAAGTTTAAGTATGT
GGAAGAGGACGGTGAGTTGTAAGTTAGATAAGGTGAAGGGAATGGAGGGAAAAAAGCAGCCTAT
TGGGAGACTCAGGCAGGGGCAGATGGGTTGAGAAGCAGAAGGGAGCAGGGCATCTTGAGAGCTG
GCATTGTGCTTGGTCAGAGGAGCTAAGCCCTGGTCTTAGGCCTGAGCCTGGAGTCTGCCCCCAT
TTCCTTTTCCTATAATCCTGCCTTCCAGGTTTTTTTCCTGAAGTCTGTCCCTCTTCAGGAGTAA
CCCCTACCCATCCCCACCCCTGTGAGTCTGGAGTCCGAAGGGCTTGTACCTTGTCACCTTACCT
TGACATGCCACCCCAGGAGTAGAAGCTGGGTAAGGCCCCAATATCCTGGCCATCTCTGTTCATA
TGCCCAAGGTGCTAGAATTAGCTTAGGAGAGATGCAGGCCAGAGGGTTTGCAGGCAGGGAGAAG
GACACCTTACCCCAAGGCAAGAATGCAGAGAGGCATGATGCTAAGGAGGAATTAATGATGCTAA
GGAGGGATTATGGGGTAAAGCCGTCCCCAGACTGACAGTCCCCTGCCTTCATCTTGCCTCTGGC
CTTATATTTCATACTCTGTTCAATATGGCTGGGGAATAAACACTCCTGGGTAGAGGAGGTCAGG
AGCCTCAGTGTCCAGATTCCCAAATTTTTCTTACAGAGATTCAGGGCCTTCAAGAGTCTTCTTA
ATGTTCTCCCACAGGGCTCTTTCTTTGAGTGCCCTATGATCCCTCTTCCCTTTCTAGTTAAATA
TCAGGAGTAAGGAATTTCTTGGTTAGGACACAGGGATGGGGTAGCCAGCTTCTCCCTTCTTGTG
GTGGGGCTCAGACACCAGCAACAGCCTCTTGGGATGCCCCAAGTTGTCTCCAGTTCTTTCTAGC
TGTCCTTTTTTAAGTGTGTGCTCTTCCTTCCTTAAAACCCCTAGATTTCCTGTTACATACTAAC
ACAGGTCTTCCCTTTCACTCCAACCCCAGGTTTCAGGCCTCAGAGCCATGCTGGGGTTGGAGAA
AACTGCATTCCTATGAGGGTAAAAAGTAGCTGCCCTCTCTGACCCTTTCTTGCTAGGCTTCATG
CGGGATGGGAGAGGGTATCCCCAGGATGGGGACAGAGGAAGCCTGGCTAGGGCCTTCTAGCCCA
ATAAGCCAAACAGGAACTATAAGCAGATCAAAATCCTACACTAGCTTATTAGGGCCCTGTTAGT
TGAAAACCTTGTTGCTGTCCCAAGTTCTTCAGTTACAACCGAGTACACTTACTCTTCCAACTGT
CCTAAGGGTCACTACCCAGCCAGCTTTGGATCTTCAGCACTTTTAAAAGCTGAAACTCCCTCTT
GCCCTTCTTGTCTATTCCTCACTGCCAGTTGGGGCCTAGGCTCAGTCCTGGGCAAATGCCCATG
ATCCTGCTGCTGTGGGAAGTTTGATAGGGCATTTGGCTCAAATTTCAAAAGGCCTCGCTCCTGA
CCTGATTTCTCGAAGCTCCAGTAGTTCTAGACCCCTCCAATCTCTCATCTGACTGGTTGCAAGG
CTTATTTTTCTTTTGTACTTTCCTATAGAGCATTTCTGTAGCATTTGAGTGTGGCGATATTTTT
GTTGTGTGTAGATTTCTAAGAACCAACACTACTCAGTCTCCTGCTAGTCTGACTCCTGAAGCAT
CAGACCTCGTCATACGGTATTGACTGTGTATGTGCCTTTCACCTTGAGCATGCTTCAGGATTTT
TTTTCTTAAACCACAGAACTTGAATACACAAGGGAACCAGAATTCACAAAGTCCTATGCAACCC
TAGACAGGAGGAGGTTAGAGAGTCTGTCTTGATTGGTGATTTCAGAGACCCTAGAGAAATTTGT
ACCAGTTTGTATTAATGTCAGTACTACCAGCACTTTGCCAAAACTAAGGATGTCAGAGGGACCT
GTTTCTAGAGTGAGTCCCAATTACATCAAAGGGCAACTTACAGCTTTCTCCAGTAAGTCTGAGT
GGTTCTCTTGAGCTGGTGTCACTTTCTAACCTTTGCCAGTCTAGCCCAGCAGGGCCCTGTGTGT
GTGAGTGCAGTTTGGTGCTGTTTTGGAGTATGCCTGCTCCCCAGCCTGGAACCCTCTCAGCAAC
TTGCTGGGACCTATAATGTCTTAGGTGCAACAAGGACCCTACCAGAGCTCCTGGGTGGCTTTCA
AGATCCACGTAGCTTTGTGTGAGGGGACTGAATGCAGACAAACCACAGCCTGCTTCAAATACCT
TCTTTCCCTACCACCTAGTTCCAAATGGAACCAACAAGTTGAGTGCATCTCTGTTGGGTGTTTT
GTGTTGAGACTGGCTGAAGTGAAAACTCTTTGACTGACCATGTTGTGATGTGTCGACAGACTCA
AGGACACAACCACCTCGACCTGGTCATGTGGCATGCCTGTGTATGTGTGTAACAGGATTCTGAA
TGTTAGGTTGTAATGCTATTCCTGTATGGGAGAAAAAAATAATATAAACAAATAAAAATCTATT
TAAAGCA

hide sequence

RefSeq Acc Id:

XM_039105489 ⟹ XP_038961417

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	164,342,378 - 164,350,270 (+)	NCBI
mRatBN7.2	3	143,882,211 - 143,890,098 (+)	NCBI

RefSeq Acc Id:

XM_039105490 ⟹ XP_038961418

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	164,341,618 - 164,350,270 (+)	NCBI
mRatBN7.2	3	143,881,427 - 143,890,098 (+)	NCBI

RefSeq Acc Id:

XM_039105491 ⟹ XP_038961419

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	164,345,803 - 164,350,270 (+)	NCBI
mRatBN7.2	3	143,885,635 - 143,890,098 (+)	NCBI

RefSeq Acc Id:

XM_063284177 ⟹ XP_063140247

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	164,342,378 - 164,350,270 (+)	NCBI

RefSeq Acc Id:

XM_063284178 ⟹ XP_063140248

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	164,342,378 - 164,350,270 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001257876	(Get FASTA)	NCBI Sequence Viewer
	XP_003749646	(Get FASTA)	NCBI Sequence Viewer
	XP_038961417	(Get FASTA)	NCBI Sequence Viewer
	XP_038961418	(Get FASTA)	NCBI Sequence Viewer
	XP_038961419	(Get FASTA)	NCBI Sequence Viewer
	XP_063140247	(Get FASTA)	NCBI Sequence Viewer
	XP_063140248	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	CAC82596	(Get FASTA)	NCBI Sequence Viewer
	EDL85921	(Get FASTA)	NCBI Sequence Viewer
	EDL85922	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000052180
GenBank Protein	Q8CHM3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_003749646 ⟸ XM_003749598
- Peptide Label:	isoform X1
- UniProtKB:	Q8CHM3 (UniProtKB/Swiss-Prot), G3V9L6 (UniProtKB/TrEMBL), A6KI33 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFQRFTSLFFSTPAPPEDSNCPGAFVSEEDEVDGWLIIDLQDSYTAPPDPRASPAPAGRPPPAP SLMDESWFVTPPACFTAEGPGLGPARLQSNPLEDLLIEHPSMSVYVTGSTIVLESGPPSPHPEA ALPDQDLSDGELAPARREPRALHHAAAPMPARAVLLEKAGQVRRLQRARQRAERHTLSAKVLQR QNRARESRSRRPKHQGSFIYQPCQRQFNY hide sequence

RefSeq Acc Id:

NP_001257876 ⟸ NM_001270947

- UniProtKB:

Q8CHM3 (UniProtKB/Swiss-Prot), G3V9L6 (UniProtKB/TrEMBL), A6KI33 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MFQRFTSLFFSTPAPPEDSNCPGAFVSEEDEVDGWLIIDLQDSYTAPPDPRASPAPAGRPPPAP
SLMDESWFVTPPACFTAEGPGLGPARLQSNPLEDLLIEHPSMSVYVTGSTIVLESGPPSPHPEA
ALPDQDLSDGELAPARREPRALHHAAAPMPARAVLLEKAGQVRRLQRARQRAERHTLSAKVLQR
QNRARESRSRRPKHQGSFIYQPCQRQFNY

hide sequence

Ensembl Acc Id:

ENSRNOP00000052180 ⟸ ENSRNOT00000055310

RefSeq Acc Id:	XP_038961418 ⟸ XM_039105490
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038961417 ⟸ XM_039105489
- Peptide Label:	isoform X1
- UniProtKB:	Q8CHM3 (UniProtKB/Swiss-Prot), G3V9L6 (UniProtKB/TrEMBL), A6KI33 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038961419 ⟸ XM_039105491
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063140247 ⟸ XM_063284177
- Peptide Label:	isoform X1
- UniProtKB:	Q8CHM3 (UniProtKB/Swiss-Prot), A6KI33 (UniProtKB/TrEMBL), G3V9L6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140248 ⟸ XM_063284178
- Peptide Label:	isoform X1
- UniProtKB:	Q8CHM3 (UniProtKB/Swiss-Prot), A6KI33 (UniProtKB/TrEMBL), G3V9L6 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8CHM3-F1-model_v2	AlphaFold	Q8CHM3	1-199	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692583

Promoter ID:

EPDNEW_R3108

Type:

initiation region

Name:

Tp53inp2_1

Description:

tumor protein p53 inducible nuclear protein 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	150,910,426 - 150,910,486	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:735085	AgrOrtholog
BioCyc Gene	G2FUF-47140	BioCyc
Ensembl Genes	ENSRNOG00000018225	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000055310	ENTREZGENE
InterPro	TP53INP	UniProtKB/Swiss-Prot
NCBI Gene	362246	ENTREZGENE
PANTHER	PTHR31671	UniProtKB/Swiss-Prot
	PTHR31671:SF2	UniProtKB/Swiss-Prot
Pfam	DOR	UniProtKB/Swiss-Prot
PhenoGen	Tp53inp2	PhenoGen
RatGTEx	ENSRNOG00000018225	RatGTEx
UniProt	A6KI33	ENTREZGENE, UniProtKB/TrEMBL
	G3V9L6	ENTREZGENE, UniProtKB/TrEMBL
	Q8CHM3	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2010-05-25	Tp53inp2	tumor protein p53 inducible nuclear protein 2	Trp53inp2	tumor protein p53 inducible nuclear protein 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-07-08	Trp53inp2	tumor protein p53 inducible nuclear protein 2	LOC362246	hypothetical protein	Symbol and Name updated	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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