Oit3 (oncoprotein induced transcript 3) - Rat Genome Database

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Gene: Oit3 (oncoprotein induced transcript 3) Rattus norvegicus
Analyze
Symbol: Oit3
Name: oncoprotein induced transcript 3
RGD ID: 735082
Description: Predicted to enable calcium ion binding activity. Predicted to act upstream of or within renal system process. Predicted to be located in nuclear envelope. Predicted to be active in cell surface and extracellular space. Orthologous to human OIT3 (oncoprotein induced transcript 3); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: liver-specific zona pellucida domain-containing protein; Lzp; oncoprotein-induced transcript 3 protein; similar to oncoprotein-induced transcript 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82027,933,106 - 27,953,683 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2027,933,106 - 27,953,683 (-)EnsemblGRCr8
mRatBN7.22027,390,113 - 27,410,692 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2027,390,113 - 27,410,692 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2028,400,328 - 28,420,842 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02027,786,586 - 27,807,100 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02028,531,213 - 28,551,727 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02029,009,330 - 29,029,905 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2029,009,330 - 29,029,905 (-)Ensemblrn6Rnor6.0
Rnor_5.02030,813,656 - 30,834,231 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera2028,833,503 - 28,854,112 (-)NCBICelera
Cytogenetic Map20q11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Liver-specific ZP domain-containing protein (LZP) as a new partner of Tamm-Horsfall protein harbors on renal tubules. Shen HL, etal., Mol Cell Biochem. 2009 Jan;321(1-2):73-83. Epub 2008 Oct 2.
7. Identification of LZP gene from Mus musculus and Rattus norvegicus coding for a novel liver-specific ZP domain-containing secretory protein. Xu ZG, etal., DNA Seq 2004 Apr;15(2):81-7.
8. A novel liver-specific zona pellucida domain containing protein that is expressed rarely in hepatocellular carcinoma. Xu ZG, etal., Hepatology 2003 Sep;38(3):735-44.
Additional References at PubMed
PMID:22306318  


Genomics

Comparative Map Data
Oit3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82027,933,106 - 27,953,683 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2027,933,106 - 27,953,683 (-)EnsemblGRCr8
mRatBN7.22027,390,113 - 27,410,692 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2027,390,113 - 27,410,692 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2028,400,328 - 28,420,842 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02027,786,586 - 27,807,100 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02028,531,213 - 28,551,727 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02029,009,330 - 29,029,905 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2029,009,330 - 29,029,905 (-)Ensemblrn6Rnor6.0
Rnor_5.02030,813,656 - 30,834,231 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera2028,833,503 - 28,854,112 (-)NCBICelera
Cytogenetic Map20q11NCBI
OIT3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381072,893,739 - 72,933,036 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1072,893,573 - 72,933,036 (+)Ensemblhg38GRCh38
GRCh371074,653,497 - 74,692,794 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361074,323,345 - 74,362,793 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341074,323,344 - 74,362,793NCBI
Celera1067,938,478 - 67,977,926 (+)NCBICelera
Cytogenetic Map10q22.1NCBI
HuRef1068,647,180 - 68,686,628 (+)NCBIHuRef
CHM1_11074,935,069 - 74,974,517 (+)NCBICHM1_1
T2T-CHM13v2.01073,765,121 - 73,804,414 (+)NCBIT2T-CHM13v2.0
Oit3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391059,258,782 - 59,277,601 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1059,258,780 - 59,277,600 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381059,422,960 - 59,441,779 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1059,422,958 - 59,441,778 (-)Ensemblmm10GRCm38
MGSCv371058,885,708 - 58,904,527 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361058,818,317 - 58,837,136 (-)NCBIMGSCv36mm8
Celera1060,523,229 - 60,542,048 (-)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1029.54NCBI
Oit3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543718,718,242 - 18,745,434 (-)Ensembl
ChiLan1.0NW_00495543718,721,556 - 18,745,369 (-)NCBIChiLan1.0ChiLan1.0
OIT3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2885,069,150 - 85,113,754 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11085,072,594 - 85,113,387 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01069,440,607 - 69,480,590 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11071,904,414 - 71,943,923 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1071,904,656 - 71,943,418 (+)EnsemblpanPan2panpan1.1
OIT3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1423,513,591 - 23,539,610 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl423,513,680 - 23,538,923 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha423,652,036 - 23,678,078 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0423,799,593 - 23,826,095 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl423,799,664 - 23,825,413 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1423,698,806 - 23,724,862 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0423,897,552 - 23,923,836 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0424,252,621 - 24,278,872 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Oit3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721357,605,060 - 57,631,190 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365216,098,111 - 6,123,745 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365216,098,071 - 6,123,740 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OIT3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1475,726,364 - 75,754,331 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11475,726,353 - 75,753,461 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21481,796,365 - 81,818,787 (+)NCBISscrofa10.2Sscrofa10.2susScr3
OIT3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1958,338,703 - 58,378,492 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl958,337,958 - 58,377,734 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604818,937,802 - 18,978,339 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Oit3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247546,624,353 - 6,654,282 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247546,624,612 - 6,652,039 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Oit3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11825,270,691 - 25,291,733 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Oit3
103 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:351
Count of miRNA genes:204
Interacting mature miRNAs:226
Transcripts:ENSRNOT00000075682
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202668936256021148Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
4889870Pur30Proteinuria QTL 30190.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20804392029865039Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129193376Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)202074558556021148Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202668936256021148Rat
1598870Bp289Blood pressure QTL 2892.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)20821635953216359Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129193376Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129193376Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129193376Rat
1598858Cm61Cardiac mass QTL 613.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)20821635953216359Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129193376Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202679235356021148Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)201224324249189476Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202668936256021148Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202668936256021148Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
14 9 47 100 85 87 59 55 59 3 245 125 5 88 40 72 28 4 4

Sequence


Ensembl Acc Id: ENSRNOT00000075682   ⟹   ENSRNOP00000065864
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2027,933,106 - 27,953,683 (-)Ensembl
mRatBN7.2 Ensembl2027,390,113 - 27,410,692 (-)Ensembl
Rnor_6.0 Ensembl2029,009,330 - 29,029,905 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112351   ⟹   ENSRNOP00000080380
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2027,933,106 - 27,951,205 (-)Ensembl
mRatBN7.2 Ensembl2027,390,113 - 27,408,214 (-)Ensembl
RefSeq Acc Id: NM_001001507   ⟹   NP_001001507
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82027,933,106 - 27,953,683 (-)NCBI
mRatBN7.22027,390,113 - 27,410,692 (-)NCBI
Rnor_6.02029,009,330 - 29,029,905 (-)NCBI
Rnor_5.02030,813,656 - 30,834,231 (-)NCBI
Celera2028,833,503 - 28,854,112 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001001507 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAQ55823 (Get FASTA)   NCBI Sequence Viewer  
  AAQ62080 (Get FASTA)   NCBI Sequence Viewer  
  EDL93072 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000065864
  ENSRNOP00000065864.2
GenBank Protein Q6V0K7 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001001507   ⟸   NM_001001507
- Peptide Label: precursor
- UniProtKB: Q6V0K7 (UniProtKB/Swiss-Prot),   M0R8R4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000065864   ⟸   ENSRNOT00000075682
Ensembl Acc Id: ENSRNOP00000080380   ⟸   ENSRNOT00000112351
Protein Domains
EGF-like   ZP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6V0K7-F1-model_v2 AlphaFold Q6V0K7 1-546 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701589
Promoter ID:EPDNEW_R12113
Type:single initiation site
Name:Oit3_1
Description:oncoprotein induced transcript 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02029,029,890 - 29,029,950EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:735082 AgrOrtholog
BioCyc Gene G2FUF-3765 BioCyc
Ensembl Genes ENSRNOG00000046365 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000075682 ENTREZGENE
  ENSRNOT00000075682.2 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.4100 UniProtKB/Swiss-Prot
  Laminin UniProtKB/Swiss-Prot
  Zona pellucida, ZP-N domain UniProtKB/Swiss-Prot
InterPro EGF-like_Ca-bd_dom UniProtKB/Swiss-Prot
  EGF-like_dom UniProtKB/Swiss-Prot
  ZP-C UniProtKB/Swiss-Prot
  ZP-C UniProtKB/Swiss-Prot
  ZP-N UniProtKB/Swiss-Prot
  ZP_chr UniProtKB/Swiss-Prot
  ZP_dom UniProtKB/Swiss-Prot
KEGG Report rno:294559 UniProtKB/Swiss-Prot
NCBI Gene 294559 ENTREZGENE
PANTHER ENDOGLIN/TGF-BETA RECEPTOR TYPE III UniProtKB/Swiss-Prot
  ONCOPROTEIN-INDUCED TRANSCRIPT 3 PROTEIN UniProtKB/Swiss-Prot
Pfam D8C_UMOD UniProtKB/Swiss-Prot
  FXa_inhibition UniProtKB/Swiss-Prot
  Zona_pellucida UniProtKB/Swiss-Prot
  ZP-N UniProtKB/Swiss-Prot
PhenoGen Oit3 PhenoGen
PRINTS ZPELLUCIDA UniProtKB/Swiss-Prot
PROSITE ZP_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000046365 RatGTEx
SMART EGF UniProtKB/Swiss-Prot
  EGF_CA UniProtKB/Swiss-Prot
  SM00241 UniProtKB/Swiss-Prot
Superfamily-SCOP EGF/Laminin UniProtKB/Swiss-Prot
UniProt A0A8I6G6I4_RAT UniProtKB/TrEMBL
  A6K3V0_RAT UniProtKB/TrEMBL
  M0R8R4 ENTREZGENE, UniProtKB/TrEMBL
  OIT3_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Oit3  oncoprotein induced transcript 3    similar to oncoprotein-induced transcript 3  Name updated 1299863 APPROVED
2004-09-10 Oit3  similar to oncoprotein-induced transcript 3  Lzp    Symbol and Name updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_cellular_localization mouse homolog localizes to the nuclear envelope and may also be secreted in a truncated form 1302861
gene_domains zona pellucida domain-containing 1302861