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Gene: Zbtb25 (zinc finger and BTB domain containing 25) Rattus norvegicus

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Symbol:

Zbtb25

Name:

zinc finger and BTB domain containing 25

RGD ID:

735076

Description:

Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II; regulation of cytokine production; and regulation of immune system process. Predicted to be located in nucleus. Predicted to be active in nucleoplasm. Orthologous to human ZBTB25 (zinc finger and BTB domain containing 25); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amphetamine; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

KUP; Zfp50; zinc finger and BTB domain-containing protein 25; zinc finger protein 46; zinc finger protein 50; Znf46

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	100,807,083 - 100,831,555 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	100,810,961 - 100,830,135 (-)	Ensembl				GRCr8
mRatBN7.2	6	95,070,699 - 95,095,888 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	95,075,331 - 95,095,755 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	95,468,256 - 95,477,103 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	95,766,769 - 95,775,616 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	95,195,583 - 95,204,430 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	99,376,415 - 99,400,834 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	99,380,301 - 99,400,822 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	108,787,966 - 108,812,387 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	98,947,494 - 98,956,229 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	93,500,009 - 93,508,742 (-)	NCBI		Celera
RGSC_v3.1	6	98,950,952 - 98,959,685 (-)	NCBI
Cytogenetic Map	6	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

4,4'-sulfonyldiphenol (ISO)

acrylamide (ISO)

amphetamine (EXP)

arsane (ISO)

arsenic atom (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

cobalt dichloride (ISO)

cyclosporin A (ISO)

doxorubicin (ISO)

fulvestrant (ISO)

gentamycin (EXP)

hydrogen peroxide (ISO)

leflunomide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

nitrofen (EXP)

okadaic acid (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

theophylline (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA-templated transcription (IEA)

Cellular Component

nucleoplasm (IEA,ISO)

nucleus (IEA)

Molecular Function

DNA binding (IEA)

metal ion binding (IEA)

protein binding (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	The KUP gene, located on human chromosome 14, encodes a protein with two distant zinc fingers.	Chardin P, etal., Nucleic Acids Res 1991 Apr 11;19(7):1431-6.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data

Zbtb25
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	100,807,083 - 100,831,555 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	100,810,961 - 100,830,135 (-)	Ensembl				GRCr8
mRatBN7.2	6	95,070,699 - 95,095,888 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	95,075,331 - 95,095,755 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	95,468,256 - 95,477,103 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	95,766,769 - 95,775,616 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	95,195,583 - 95,204,430 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	99,376,415 - 99,400,834 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	99,380,301 - 99,400,822 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	108,787,966 - 108,812,387 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	98,947,494 - 98,956,229 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	93,500,009 - 93,508,742 (-)	NCBI		Celera
RGSC_v3.1	6	98,950,952 - 98,959,685 (-)	NCBI
Cytogenetic Map	6	q24	NCBI

ZBTB25
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	64,449,106 - 64,505,213 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	64,449,106 - 64,505,232 (-)	Ensembl			hg38	GRCh38
GRCh37	14	64,915,824 - 64,971,931 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	64,023,308 - 64,040,307 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	14	64,023,309 - 64,040,307	NCBI
Celera	14	45,011,284 - 45,028,284 (-)	NCBI		Celera
Cytogenetic Map	14	q23.3	NCBI
HuRef	14	45,126,180 - 45,143,181 (-)	NCBI		HuRef
CHM1_1	14	64,893,250 - 64,910,227 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	58,629,558 - 58,712,973 (-)	NCBI		T2T-CHM13v2.0

Zbtb25
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	76,387,168 - 76,416,988 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	76,394,556 - 76,416,376 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	12	76,348,900 - 76,370,214 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	76,347,782 - 76,369,602 (-)	Ensembl			mm10	GRCm38
MGSCv37	12	77,449,887 - 77,470,547 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	12	77,267,784 - 77,287,839 (-)	NCBI		MGSCv36	mm8
Celera	12	77,440,013 - 77,460,673 (-)	NCBI		Celera
Cytogenetic Map	12	C3	NCBI
cM Map	12	33.73	NCBI

Zbtb25
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955466	5,378,247 - 5,395,616 (+)	Ensembl
ChiLan1.0	NW_004955466	5,378,247 - 5,395,616 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZBTB25
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	65,561,045 - 65,616,239 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	64,777,340 - 64,871,196 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	45,030,622 - 45,085,818 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	63,283,308 - 63,337,143 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	63,319,828 - 63,337,143 (-)	Ensembl			panPan2	panpan1.1

ZBTB25
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	38,911,459 - 38,933,568 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	38,909,822 - 38,932,709 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	38,600,756 - 38,624,944 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	39,130,463 - 39,154,860 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	39,134,077 - 39,153,852 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	38,752,524 - 38,776,708 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	38,823,933 - 38,847,944 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	39,184,000 - 39,208,361 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Zbtb25
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	65,979,076 - 66,018,123 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936495	8,192,045 - 8,199,307 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936495	8,173,577 - 8,211,718 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZBTB25
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	88,531,929 - 88,575,658 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	88,531,955 - 88,575,535 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

ZBTB25
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	41,690,094 - 41,711,988 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	41,690,705 - 41,697,540 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666053	29,867,025 - 29,889,173 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zbtb25
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	36,510,306 - 36,532,392 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624734	36,510,259 - 36,565,096 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Zbtb25
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	7	90,508,463 - 90,533,394 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Zbtb25
149 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	515
Count of miRNA genes:	241
Interacting mature miRNAs:	298
Transcripts:	ENSRNOT00000008424
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4145119	Mcs25	Mammary carcinoma susceptibility QTL 25		0.0001	mammary gland integrity trait (VT:0010552)	ratio of deaths to total study population during a period of time (CMO:0001023)	6	71278722	116278722	Rat
12801411	Schws8	Schwannoma susceptibility QTL 8			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	100704576	101593851	Rat
70176	Mcsm1	Mammary carcinoma susceptibility modifier QTL 1			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	64367996	109367996	Rat
2293088	Iddm28	Insulin dependent diabetes mellitus QTL 28	5.21		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	6	68767270	135411972	Rat
1331799	Bp211	Blood pressure QTL 211	3.66407		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	88019181	136741135	Rat
10054138	Gmadr3	Adrenal mass QTL 3	3.68	0.00045	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	6	90871046	135871046	Rat
1581563	Uae33	Urinary albumin excretion QTL 33			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	93560258	136550638	Rat
1641917	Colcr5	Colorectal carcinoma resistance QTL 5	3.18	0.0009	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	6	98944780	143944780	Rat
61414	Pia3	Pristane induced arthritis QTL 3	4.5		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	6	100704576	136029228	Rat
724524	Uae2	Urinary albumin excretion QTL 2	2.7	0.0005	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	79198463	144254945	Rat
737827	Hcar11	Hepatocarcinoma resistance QTL 11	4.4		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	6	46050607	116278722	Rat
2303624	Vencon5	Ventilatory control QTL 5	4.45		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	6	93778632	138778632	Rat
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	20859430	113082285	Rat
2293837	Kiddil1	Kidney dilation QTL 1	3.7		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	86867923	110125012	Rat
61329	Eae9	Experimental allergic encephalomyelitis QTL 9	3.7		body mass (VT:0001259)	change in body weight (CMO:0002045)	6	84490437	129490437	Rat
2293842	Kiddil3	Kidney dilation QTL 3	4.3		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	86867923	110125012	Rat
10054123	Srcrt6	Stress Responsive Cort QTL 6	2.5	0.0043	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	90871046	135871046	Rat
724536	Uae7	Urinary albumin excretion QTL 7	3.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	93560258	136550638	Rat
1576302	Schws4	Schwannoma susceptibility QTL 4		0.0078	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	78204640	123204640	Rat
1581550	Pur8	Proteinuria QTL 8			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	93560258	136550638	Rat
1300075	Glom7	Glomerulus QTL 7	5.6	0.0000002	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	6	76937178	121937178	Rat
1331789	Rf37	Renal function QTL 37	3.224		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	6	86494122	112380234	Rat
1331725	Bp212	Blood pressure QTL 212	3.52475		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	99437079	125323237	Rat
1331722	Thshl1	Thyroid stimulating hormone level QTL 1	11.7	0.0001	blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	6	99708426	112483760	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001433967	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433969	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_199496	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240236	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240237	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764768	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112269	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112270	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112271	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC103479	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC061829	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000008424 ⟹ ENSRNOP00000008424

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	100,810,961 - 100,819,692 (-)	Ensembl
mRatBN7.2 Ensembl	6	95,075,331 - 95,084,062 (-)	Ensembl
Rnor_6.0 Ensembl	6	99,380,301 - 99,389,032 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000089594 ⟹ ENSRNOP00000072081

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	100,810,961 - 100,830,135 (-)	Ensembl
mRatBN7.2 Ensembl	6	95,075,826 - 95,095,755 (-)	Ensembl
Rnor_6.0 Ensembl	6	99,381,362 - 99,400,822 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114600 ⟹ ENSRNOP00000089222

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	95,075,331 - 95,084,409 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000130542 ⟹ ENSRNOP00000100703

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	100,812,258 - 100,827,852 (-)	Ensembl

RefSeq Acc Id:

NM_199496 ⟹ NP_955790

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	100,810,958 - 100,819,692 (-)	NCBI
mRatBN7.2	6	95,075,328 - 95,084,062 (-)	NCBI
Rnor_6.0	6	99,380,298 - 99,389,032 (-)	NCBI
Rnor_5.0	6	108,787,966 - 108,812,387 (-)	NCBI
RGSC_v3.4	6	98,947,494 - 98,956,229 (-)	RGD
Celera	6	93,500,009 - 93,508,742 (-)	RGD

Sequence:

show sequence

AGGATCTCAGAAGAAAATGGACAGTTCTAGTCCAGAGCCACAATGGATACTGCTAGCCATAGCC
TTGTGCTTCTGCAGCAGCTGAACATGCAGCGAGAATTTGGTTTTCTGTGTGACTGCACAGTTGC
TATTGGAGACGTTTACTTCAAAGCCCACCGAGCAGTACTTGCTGCTTTTTCTAACTATTTCAAG
ATGATTTTTATTCACCAAACAAGTGAATGCATAAAAATACAGCCAGCTGACATCCAGCCCGATA
TATTCAGCTACTTGTTGCATATTATGTACACAGGAAAAGGGCCAAAACAGATTGTGGATCATAG
TCGTTTGGAGGAAGGGATCCGATTCCTTCATGCTGACTACCTTTCTCACATTGCAACTGAAATG
AATCAAGTGTTCTCACCAGAGACTGTGCAGACATCAAATTTGTATGGTATTCAGATTTCAACAA
CCCAGAAAACAGCTGTCAAACAAGGGCTGGAGATCAAAGACACTCCTCCCAGTAGCAGTGGAAA
TAGAGCTGCTGCCCCAGGTGACCACCCCCAGCTGCAGCTTTCCCTTGCAATTGGACTAGATGAT
GGTGGTGCGGAGCAGCAAAGGGCCCATCCTGCTGCCCAGGCCCTGGAGGAGCACCAGAAGCCCC
CAGTGACCATCAAACAGGAGAGATGTGATCCAGAGTCTGTGATCTCCCAAAGCCACTCCTCGTC
CTCATCAGAGGTGACTGGCTCCTCTTTTACAGAAAACAGTGTCAAAGTCCACTTATGCCATTAC
TGTGGGGAGCGTTTTGAGTCCCGAAGTAACCTGAGACAGCACCTCCATACCCATGTGTCTGGAT
CTCTCCCGTTTGGTGTCCCTGCTTCCATTTTGGAAAGTAATGACCTTGGTGAAGTGCATCCACT
TAGTGGCAGCAGTGAAGCTCTTGAGTGCCGGAGGCTCGGCTCCTTCCTTGCCGAGGAGGATGGG
CAGCAGCCGCGTCCGCCTGAGCACTCAGGCCGGGGCCCCTCAGAGCCCTTGCAGATCAGCCAAG
TGTCTGTGATCTCCAAAGACACAGAGCCGGTGGAGTTAAACTGTAATTTTTCTTTTTCAAGGAA
AAGAAAAATCAGTTGTACCATTTGTGGTCATAAATTTCTTCGAAAGAGCCAGTTACTGGAACAC
ATGTATACACACAAAGGTAAATCCTACAGATACAACCGATGCCAAAGGTTTGGAAATTCATTGG
CCCAGAGGTTTCAGCAGTATTGTGACAGCTGGCCCGATGTCTCCTTAAAAACCTCTCGCTTGTC
ACAAGAACATTTAGACTTGCCTTGTGCCTTAGAGTCAGAGATGACACAAGCAGGTGTGGACACC
ATCCTTGTTGAGTAGCACCGTCTCCTTTAGAATTTTTATACCAATCTTGGAAGAGATTCACATG
CCATTTCTAATTCATAAGTTAGTTACCTCCTAGTGGTCTTTTGACTTAAAGTAATCTGTCACTA
GTTTTGAGGTTGTACACACCAGTTCTCACCACAGACATGGCTATAAACATAACCTTCAAAGTAT
CCTATGAGCTTTTTTATAAATTAAATCATTATTTGAAAATCAGAAGTTAATGTAGAAACTTTAG
AGTGAGTGATTATTTATAAAATCTCTTTGTTTTTCCAGGTTGTAGGGTCAGTAAAATGAACTTG
AATATGAAGCAGATGAGATCTGTTTTAAAGAGTATTTTAAAGACTGGAAATGAAGCTGCTCTAT
AGAGTGCTTGCCTAGCATGTGTGAGGCCCTAGGTTCAGTGTCCAGCACACATTCACATGCTCAC
ACACAAACACACTTCTAAACTGTCACTTGTGTCTTATGTTTCATATGAATTATGTTCTTAGGAA
AATGATTTTTAAATATTTTCTGCCATATAGGAAATCAATAGTTATTTTAATGTATAACTATATA
TAGAAAATAATCAGTTATTTTAATGTATAACTATATAATGTATAAAAAGTTTGCTTTGTTTCAA
GACATGGCTATACCAAATCAAGAGTAGTTTTAACTGTATTTACTAGCATTCCAACCTCCTACAT
GGCCTTTTATTTACTAAACATCAAGTATACCTCATTTTTAATAAAACTATCTCAGCTAAAAAAG
GAAGGATAGGAGAAGTCAGTGGTAAAGAAGTCTTGAACAGAGAAACAGAGCATTGACATAAATG
GAGCACAGCTGCGGGTCTGTGTGAGCTAACCTCGGCTAACCTCGGTAGGAGTAGGCAGATCTAC
AGTGTGTTCTTAGAGACTTTCAGATGTTTATACCAAGAGGTTCACCTAGGTTTGAAGAGGAAAG
TCATAAGATACACATCGTCTCCCTGACTTAATGTCACACACTTGTCAAGGCTGCCTGGGTTGAT
GGTAGTTTTCTGAAAGTCACTCCTGAAGGTAATTTTACAGTGGCGTGACTTTCACTTTTCTGTT
AGTAAAACCAGTGGAGTGGATGCCTTAAGTGTTCCAGGCCTATTTAAAACCCATGCTGGCAGCT
CTCCTTTTGTGAATATACTCACTTCCCTTTTATAGTGGTGACACTTAGAAACTTAAAACTCCAG
GAAAATGGATGTTGTTGGACTAAGTGATGCATTTTCTGTACCTAACAAGTCGTCCATCAAAAAA
AAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006240236 ⟹ XP_006240298

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	100,807,083 - 100,831,555 (-)	NCBI
mRatBN7.2	6	95,070,699 - 95,095,888 (-)	NCBI
Rnor_6.0	6	99,376,415 - 99,400,834 (-)	NCBI
Rnor_5.0	6	108,787,966 - 108,812,387 (-)	NCBI

Sequence:

show sequence

TGTTGTGCGCCGCGCGGGAGCCCGCCCCTCCCGCACAGAGAAGCCCGCCCGCCGCCGCGGCGGA
GTCTGGAGCCACAATGGATACTGCTAGCCATAGCCTTGTGCTTCTGCAGCAGCTGAACATGCAG
CGAGAATTTGGTTTTCTGTGTGACTGCACAGTTGCTATTGGAGACGTTTACTTCAAAGCCCACC
GAGCAGTACTTGCTGCTTTTTCTAACTATTTCAAGATGATTTTTATTCACCAAACAAGTGAATG
CATAAAAATACAGCCAGCTGACATCCAGCCCGATATATTCAGCTACTTGTTGCATATTATGTAC
ACAGGAAAAGGGCCAAAACAGATTGTGGATCATAGTCGTTTGGAGGAAGGGATCCGATTCCTTC
ATGCTGACTACCTTTCTCACATTGCAACTGAAATGAATCAAGTGTTCTCACCAGAGACTGTGCA
GACATCAAATTTGTATGGTATTCAGATTTCAACAACCCAGAAAACAGCTGTCAAACAAGGGCTG
GAGATCAAAGACACTCCTCCCAGTAGCAGTGGAAATAGAGCTGCTGCCCCAGGTGACCACCCCC
AGCTGCAGCTTTCCCTTGCAATTGGACTAGATGATGGTGGTGCGGAGCAGCAAAGGGCCCATCC
TGCTGCCCAGGCCCTGGAGGAGCACCAGAAGCCCCCAGTGACCATCAAACAGGAGAGATGTGAT
CCAGAGTCTGTGATCTCCCAAAGCCACTCCTCGTCCTCATCAGAGGTGACTGGCTCCTCTTTTA
CAGAAAACAGTGTCAAAGTCCACTTATGCCATTACTGTGGGGAGCGTTTTGAGTCCCGAAGTAA
CCTGAGACAGCACCTCCATACCCATGTGTCTGGATCTCTCCCGTTTGGTGTCCCTGCTTCCATT
TTGGAAAGTAATGACCTTGGTGAAGTGCATCCACTTAGTGGCAGCAGTGAAGCTCTTGAGTGCC
GGAGGCTCGGCTCCTTCCTTGCCGAGGAGGATGGGCAGCAGCCGCGTCCGCCTGAGCACTCAGG
CCGGGGCCCCTCAGAGCCCTTGCAGATCAGCCAAGTGTCTGTGATCTCCAAAGACACAGAGCCG
GTGGAGTTAAACTGTAATTTTTCTTTTTCAAGGAAAAGAAAAATCAGTTGTACCATTTGTGGTC
ATAAATTTCTTCGAAAGAGCCAGTTACTGGAACACATGTATACACACAAAGGTAAATCCTACAG
ATACAACCGATGCCAAAGGTTTGGAAATTCATTGGCCCAGAGGTTTCAGCAGTATTGTGACAGC
TGGCCCGATGTCTCCTTAAAAACCTCTCGCTTGTCACAAGAACATTTAGACTTGCCTTGTGCCT
TAGAGTCAGAGATGACACAAGCAGGTGTGGACACCATCCTTGTTGAGTAGCACCGTCTCCTTTA
GAATTTTTATACCAATCTTGGAAGAGATTCACATGCCATTTCTAATTCATAAGTTAGTTACCTC
CTAGTGGTCTTTTGACTTAAAGTAATCTGTCACTAGTTTTGAGGTTGTACACACCAGTTCTCAC
CACAGACATGGCTATAAACATAACCTTCAAAGTATCCTATGAGCTTTTTTATAAATTAAATCAT
TATTTGAAAATCAGAAGTTAATGTAGAAACTTTAGAGTGAGTGATTATTTATAAAATCTCTTTG
TTTTTCCAGGTTGTAGGGTCAGTAAAATGAACTTGAATATGAAGCAGATGAGATCTGTTTTAAA
GAGTATTTTAAAGACTGGAAATGAAGCTGCTCTATAGAGTGCTTGCCTAGCATGTGTGAGGCCC
TAGGTTCAGTGTCCAGCACACATTCACATGCTCACACACAAACACACTTCTAAACTGTCACTTG
TGTCTTATGTTTCATATGAATTATGTTCTTAGGAAAATGATTTTTAAATATTTTCTGCCATATA
GGAAATCAATAGTTATTTTAATGTATAACTATATATAGAAAATAATCAGTTATTTTAATGTATA
ACTATATAATGTATAAAAAGTTTGCTTTGTTTCAAGACATGGCTATACCAAATCAAGAGTAGTT
TTAACTGTATTTACTAGCATTCCAACCTCCTACATGGCCTTTTATTTACTAAACATCAAGTATA
CCTCATTTTTAATAAAACTATCTCAGCTAAAAAAGGAAGGATAGGAGAAGTCAGTGGTAAAGAA
GTCTTGAACAGAGAAACAGAGCATTGACATAAATGGAGCACAGCTGCGGGTCTGTGTGAGCTAA
CCTCGGCTAACCTCGGTAGGAGTAGGCAGATCTACAGTGTGTTCTTAGAGACTTTCAGATGTTT
ATACCAAGAGGTTCACCTAGGTTTGAAGAGGAAAGTCATAAGATACACATCGTCTCCCTGACTT
AATGTCACACACTTGTCAAGGCTGCCTGGGTTGATGGTAGTTTTCTGAAAGTCACTCCTGAAGG
TAATTTTACAGTGGCGTGACTTTCACTTTTCTGTTAGTAAAACCAGTGGAGTGGATGCCTTAAG
TGTTCCAGGCCTATTTTAAACCCATGCTGGCAGCTCTCCTTTTGTGAATATACTCACTTCCCTT
TTATAGTGGTGACACTTAGAAACTTAAAACTCCAGGAAAATGGATGTTGTTGGACTAAGTGATG
CATTTTCTGTACCTAACAAGTCGTCCATCAAATTTCATTGTTTCTTAAGTGTTATTTAAACTTG
AATTCTGTTCTCAAGGATCAGAAGGCAAGAGAGACGTAGAACAGCCCCTCTCCCTCCCCTCTTA
AAGTCTAAGCCTCACAGACATGTAAAGAACATTTGAGTTGATCTTGACACACACACACACACAC
ACACACACACACACACACACACACACACACCCTCACCCTCCTCTCAGATTGTAAACTAGAGTCC
TGCTATGTTACCAGGTTGGCCTTAAAATCTTGGACACAAGCAGTTTTCTGCTTGAGCTTCCCAG
GTGGCCAGGACCATGGGGCATGTGCTGTCTTTCAGATACCTCAATGTGTCCATTTAATTTCGAC
ACAATGCTAACCCCACTCAGGTGCATACCTCTGAAGACATTTAAGAGTTCACCTCCTCTGTCTG
TCAGCAGGTCAGAGTGACTCAGCTAATTCTGAAACAAAAGTTTATTTTGTTTTGTTTTGTTTTG
TTTTTTCTGGGTAAATGGTGAGTTCAGTTGAATAACAAAGTTTCAGAGATGGTGGCTTGGGCCT
TTAATCCCAGAACTTGTGAGGCTGATTGCTGAGTTCGAGGCCATCCTGATTTATATGGTGTGCT
CCAGACCAGTTAGAGTGTCATAGTGAGACCTTCTCTCAGACAGAACAGACACACCCAGATACCA
CTCCAAAACAAAGTAGTTTTAACATTTTTGAGACATTCTTGCTATTCAGCCCAGGCTAGACTTG
AACTCACATTGTTTTCTCCCTGCCTCCTACCACTGGCGTCATGGGCTGTATGTAGGCCCGGCCA
GCCGTCAGACTGGTAACTTTCAGGGGCTAAGTGAAGTACCCAACTGGGCACTGTTCTAAGGTAA
CTGAATTTCTGATTAGAGAATTAGCCTCTGGGATCAAGACTGATACGTATTTTGAGAGCAAAAC
CTAGCAAGTGGTAGAACGGATTGTATTGGGGGTGGTTAAACTAGTGTGCTGTTATGGGGGGGGG
GGTCATAATTACATATTATCTTAAACTTAAGTCCTCAAAGCAGTTACCCGGTTACAGCACCCTC
AGTGATTTAATCTTACAGAAACACGAATGCTGACTTCACGTATTTGAGGTTATTTAGGATATAT
TCCCTACCTTTAACTTTTTGAGGGATAGAGTTATATCTCAATATATTTATAATGAGATAAGGGG
TTTTTTGAGATAGAGCCTGGGCTGGCCTTAGACTCACAACATAGCTGAAGTTGGCCTTCAGCTC
CTGATCTGCCTGCCTCCACCCCCAAGCCCTGGTGTTACAGTATAGGTGCGCCCTCCTCACATCA
GGCTCCTCTAGCCTTCTCAAAGTAAAACTTTACTCTTCAGCTTTTCTAGTCCTCCCTGCATACC
AAGTCTGACCCACAAAGCCCTTATTAGGGTGGGAGTGGAGACATGCTTTCAGGGTAGGTGAGTG
GGTACAGTAGCTCAAGACAATCCAGAGAAGTGCTAAAGGAGTTTGCCAACGGCTGGTGGCCATG
TTAGACACCAGGCACTGTCTGTTTAAAGTGGAACTATATATATGAAGGTCTCAAAGAGTTAATA
AAAAATGTATCAGTAAATAAAATACCTAGTAAATACCTAGAGCCTGGGGAAATGGCTCTGTGAG
TAACGTGATTACTGTTTATGCATTTGAACCTGACATAGGTGTGGTAAGGTCCAGTGCTGGTTGG
GGAGCAGAGACAGGAAGATATCAGGGGCGCTCAGGCCAGCCAGCCTTACAGAAAGAGCAAGCTC
CAAGTTCACTGAGACTCCGAGGCAGAGATCGATTGAAGGAGAAAGTGATTGATTGAGTCAGTCT
TTAGTCGAAACATGTACCCACATGGGTGCACACGCATGCACATACATACTCCTCACATACAAAA
CTAACGAGTGGAACTCTATTGCTAGGGAGCTTCAAAAATATTGGTTCACCTGGTGCCCGTTATT
AAAGTTCTTTAGCACTGAGACTTCACCTGATTCCTGTTATTCATAAAGTTATTTTTATACTGAG
AACTAAAAAGACAGAATGCTGGGTCTTGCCTGTCTAATCCCAGCTGTCAGTAGACCAAGGCAGG
CTTGTAAATTCAGGACTAACCTGGAGCTAGATGGCAAGACCGGTCTCAAGAGAAACAGCAACAA
ACAAGCAAACAAAAAAACAAAATTTTCTCAGTCTTCAATAATGTTTTGTTTTAGGAAGTAGAGA
TGTGTGTTTCATTTAATAGAAAAAGTTCCCTAAAGCTAATTTCTACTGAGGCATGTAGGAAGTG
GTGTGGGACTGCTGTTGCTTTGTTTTGATTTTTAAGAAAGATATATTTACCTTTATGGTATGTG
TTAGGGTGTTCTGCCTCCATGCGTTTCTGTGCACAGCATGTACACCGTAATTGTGGAGGCCAGA
AAGGGCATCAGAATCTTTAGAATTCATGTGGGTGCTGGAACTGAACCAGGTTCTCTGCAAGAGC
AGCAAGTACCCCAAATCACCAGTCCTCTCTCCAGCTCATTTGGGTTTCTTTGAGATTGGGTCTT
ACTGTATGGCCCACGCCAGCCTGAGACTTGAAACAATCCTGTATCCACCTCCTAAGTGCCTAGG
GTAACAGGCATACACTATAACACTTACAGCCTGGGCAGTTTTGGTTTTGGTTTTAAGACATGAT
TCTTCATTGTGGGGGGGAAAGTATTCATATTTTAAAAGGTTTTCCAGGAACAACCTTTACTTTC
TGTCACATCTGCAAAATGGAGCTCCCCTCCCCCACTCTCTAGCTGTGTTTTGTGAAATGGTTGC
CGAGTTGAACCAGGAGTTGCCATATGTACTTTGTTGCCAGATGTCGCCCTCTTGTGTTGAGGTG
TAGCCTGCTGGGTACCGTTTTAAAGGCCTGGTAAAACAAGCTCAATTCCCGTCACTCGTCTGTG
TACTAGGCAGATACTAGATAGGTCTTTTCTGCTTGGGCCAGCTTTAACTCTTCCCTTGCTTTTA
GATCCTACGTGTAGATGTTTTCTGGAGAAAAGCAGAGGCCGTTTCCACATTTGTTCTTGGTAGG
AGCACTCAGTGAGTGCCGTCTGCCTTTTTTTACTATATAGAGTGGTTACTCATTCCTTCCGGGT
AAGGTGGGTGTCAACAGCGCCTACCTCACAGGGGTGTTGTGGGGCTTTGTTCTAAAATGGTTAG
TGTGCTGAAGAAAAACCAACACGAGGAAGCAGTGCCACGGCTGGCCCTATTCAGTATTCCATCC
AGTAGATTCTAGAACATGCTTGCAGCACCCGTGCACTACTTAATAAACAGTTCATCGAGAAGAC
TAGTTTTTCCCAAAATGCGCCAGAAATAGGAGTGCTGCTTGAGTTCTACTCTTCTGTAGTATTT
CTCACTACTGTTCAGCAAGGTAGATAGGATTTAGCATTGTTGGAAATAAAATATGCTAATTCTA
GCTAATGACATTTACTCCAAATACATTATTTTCATAAAAGGAAGAAAGAAAATAAAAATCCCAT
CGTTTCTTGGATGAAGACGGTCTAAGTAGTAAAGAGGGATGGGACTGGAATGATTATCCGTAGG
AACTCACTAATGTTCTCTTGAAGTAAAGCTGGACCACTTTCTCTGAACACTGAAGGAAATGCCT
GCTAGTCACGAAGGGAGAGCAAGCTGGAAAGCGGACAGACAGTTCCTGAGCCTGTTTGCACAGA
CCGAGTCTTGATACTGAAACTAGGATTCCTGAAGAATACTTGATAGGTATTTTTGTGGTAACTG
TGCTAAAAATAGTTGATGTGGAAAATTTTTACAGTGTAACTTGTGTCTTTTAGTATACTTAAAC
TAAATATGTCTGTGGTGTTTCATTAATAAATTGTTAAGTTCCTAGGAGTGAACTCTGTAAACAC
TAATGCACTCA

hide sequence

RefSeq Acc Id:

XM_006240237 ⟹ XP_006240299

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	100,807,083 - 100,831,428 (-)	NCBI
mRatBN7.2	6	95,070,699 - 95,095,746 (-)	NCBI
Rnor_6.0	6	99,376,415 - 99,400,741 (-)	NCBI
Rnor_5.0	6	108,787,966 - 108,812,387 (-)	NCBI

Sequence:

show sequence

GTGGGCTGCTCCGGGCTCAGTCCCTCCCGCCGCGAGCCGCCGGGGCGGCGGCTGCAGCTGCACC
CGTCGCGGGACAGATAGCCACAATGGATACTGCTAGCCATAGCCTTGTGCTTCTGCAGCAGCTG
AACATGCAGCGAGAATTTGGTTTTCTGTGTGACTGCACAGTTGCTATTGGAGACGTTTACTTCA
AAGCCCACCGAGCAGTACTTGCTGCTTTTTCTAACTATTTCAAGATGATTTTTATTCACCAAAC
AAGTGAATGCATAAAAATACAGCCAGCTGACATCCAGCCCGATATATTCAGCTACTTGTTGCAT
ATTATGTACACAGGAAAAGGGCCAAAACAGATTGTGGATCATAGTCGTTTGGAGGAAGGGATCC
GATTCCTTCATGCTGACTACCTTTCTCACATTGCAACTGAAATGAATCAAGTGTTCTCACCAGA
GACTGTGCAGACATCAAATTTGTATGGTATTCAGATTTCAACAACCCAGAAAACAGCTGTCAAA
CAAGGGCTGGAGATCAAAGACACTCCTCCCAGTAGCAGTGGAAATAGAGCTGCTGCCCCAGGTG
ACCACCCCCAGCTGCAGCTTTCCCTTGCAATTGGACTAGATGATGGTGGTGCGGAGCAGCAAAG
GGCCCATCCTGCTGCCCAGGCCCTGGAGGAGCACCAGAAGCCCCCAGTGACCATCAAACAGGAG
AGATGTGATCCAGAGTCTGTGATCTCCCAAAGCCACTCCTCGTCCTCATCAGAGGTGACTGGCT
CCTCTTTTACAGAAAACAGTGTCAAAGTCCACTTATGCCATTACTGTGGGGAGCGTTTTGAGTC
CCGAAGTAACCTGAGACAGCACCTCCATACCCATGTGTCTGGATCTCTCCCGTTTGGTGTCCCT
GCTTCCATTTTGGAAAGTAATGACCTTGGTGAAGTGCATCCACTTAGTGGCAGCAGTGAAGCTC
TTGAGTGCCGGAGGCTCGGCTCCTTCCTTGCCGAGGAGGATGGGCAGCAGCCGCGTCCGCCTGA
GCACTCAGGCCGGGGCCCCTCAGAGCCCTTGCAGATCAGCCAAGTGTCTGTGATCTCCAAAGAC
ACAGAGCCGGTGGAGTTAAACTGTAATTTTTCTTTTTCAAGGAAAAGAAAAATCAGTTGTACCA
TTTGTGGTCATAAATTTCTTCGAAAGAGCCAGTTACTGGAACACATGTATACACACAAAGGTAA
ATCCTACAGATACAACCGATGCCAAAGGTTTGGAAATTCATTGGCCCAGAGGTTTCAGCAGTAT
TGTGACAGCTGGCCCGATGTCTCCTTAAAAACCTCTCGCTTGTCACAAGAACATTTAGACTTGC
CTTGTGCCTTAGAGTCAGAGATGACACAAGCAGGTGTGGACACCATCCTTGTTGAGTAGCACCG
TCTCCTTTAGAATTTTTATACCAATCTTGGAAGAGATTCACATGCCATTTCTAATTCATAAGTT
AGTTACCTCCTAGTGGTCTTTTGACTTAAAGTAATCTGTCACTAGTTTTGAGGTTGTACACACC
AGTTCTCACCACAGACATGGCTATAAACATAACCTTCAAAGTATCCTATGAGCTTTTTTATAAA
TTAAATCATTATTTGAAAATCAGAAGTTAATGTAGAAACTTTAGAGTGAGTGATTATTTATAAA
ATCTCTTTGTTTTTCCAGGTTGTAGGGTCAGTAAAATGAACTTGAATATGAAGCAGATGAGATC
TGTTTTAAAGAGTATTTTAAAGACTGGAAATGAAGCTGCTCTATAGAGTGCTTGCCTAGCATGT
GTGAGGCCCTAGGTTCAGTGTCCAGCACACATTCACATGCTCACACACAAACACACTTCTAAAC
TGTCACTTGTGTCTTATGTTTCATATGAATTATGTTCTTAGGAAAATGATTTTTAAATATTTTC
TGCCATATAGGAAATCAATAGTTATTTTAATGTATAACTATATATAGAAAATAATCAGTTATTT
TAATGTATAACTATATAATGTATAAAAAGTTTGCTTTGTTTCAAGACATGGCTATACCAAATCA
AGAGTAGTTTTAACTGTATTTACTAGCATTCCAACCTCCTACATGGCCTTTTATTTACTAAACA
TCAAGTATACCTCATTTTTAATAAAACTATCTCAGCTAAAAAAGGAAGGATAGGAGAAGTCAGT
GGTAAAGAAGTCTTGAACAGAGAAACAGAGCATTGACATAAATGGAGCACAGCTGCGGGTCTGT
GTGAGCTAACCTCGGCTAACCTCGGTAGGAGTAGGCAGATCTACAGTGTGTTCTTAGAGACTTT
CAGATGTTTATACCAAGAGGTTCACCTAGGTTTGAAGAGGAAAGTCATAAGATACACATCGTCT
CCCTGACTTAATGTCACACACTTGTCAAGGCTGCCTGGGTTGATGGTAGTTTTCTGAAAGTCAC
TCCTGAAGGTAATTTTACAGTGGCGTGACTTTCACTTTTCTGTTAGTAAAACCAGTGGAGTGGA
TGCCTTAAGTGTTCCAGGCCTATTTTAAACCCATGCTGGCAGCTCTCCTTTTGTGAATATACTC
ACTTCCCTTTTATAGTGGTGACACTTAGAAACTTAAAACTCCAGGAAAATGGATGTTGTTGGAC
TAAGTGATGCATTTTCTGTACCTAACAAGTCGTCCATCAAATTTCATTGTTTCTTAAGTGTTAT
TTAAACTTGAATTCTGTTCTCAAGGATCAGAAGGCAAGAGAGACGTAGAACAGCCCCTCTCCCT
CCCCTCTTAAAGTCTAAGCCTCACAGACATGTAAAGAACATTTGAGTTGATCTTGACACACACA
CACACACACACACACACACACACACACACACACACACACCCTCACCCTCCTCTCAGATTGTAAA
CTAGAGTCCTGCTATGTTACCAGGTTGGCCTTAAAATCTTGGACACAAGCAGTTTTCTGCTTGA
GCTTCCCAGGTGGCCAGGACCATGGGGCATGTGCTGTCTTTCAGATACCTCAATGTGTCCATTT
AATTTCGACACAATGCTAACCCCACTCAGGTGCATACCTCTGAAGACATTTAAGAGTTCACCTC
CTCTGTCTGTCAGCAGGTCAGAGTGACTCAGCTAATTCTGAAACAAAAGTTTATTTTGTTTTGT
TTTGTTTTGTTTTTTCTGGGTAAATGGTGAGTTCAGTTGAATAACAAAGTTTCAGAGATGGTGG
CTTGGGCCTTTAATCCCAGAACTTGTGAGGCTGATTGCTGAGTTCGAGGCCATCCTGATTTATA
TGGTGTGCTCCAGACCAGTTAGAGTGTCATAGTGAGACCTTCTCTCAGACAGAACAGACACACC
CAGATACCACTCCAAAACAAAGTAGTTTTAACATTTTTGAGACATTCTTGCTATTCAGCCCAGG
CTAGACTTGAACTCACATTGTTTTCTCCCTGCCTCCTACCACTGGCGTCATGGGCTGTATGTAG
GCCCGGCCAGCCGTCAGACTGGTAACTTTCAGGGGCTAAGTGAAGTACCCAACTGGGCACTGTT
CTAAGGTAACTGAATTTCTGATTAGAGAATTAGCCTCTGGGATCAAGACTGATACGTATTTTGA
GAGCAAAACCTAGCAAGTGGTAGAACGGATTGTATTGGGGGTGGTTAAACTAGTGTGCTGTTAT
GGGGGGGGGGGTCATAATTACATATTATCTTAAACTTAAGTCCTCAAAGCAGTTACCCGGTTAC
AGCACCCTCAGTGATTTAATCTTACAGAAACACGAATGCTGACTTCACGTATTTGAGGTTATTT
AGGATATATTCCCTACCTTTAACTTTTTGAGGGATAGAGTTATATCTCAATATATTTATAATGA
GATAAGGGGTTTTTTGAGATAGAGCCTGGGCTGGCCTTAGACTCACAACATAGCTGAAGTTGGC
CTTCAGCTCCTGATCTGCCTGCCTCCACCCCCAAGCCCTGGTGTTACAGTATAGGTGCGCCCTC
CTCACATCAGGCTCCTCTAGCCTTCTCAAAGTAAAACTTTACTCTTCAGCTTTTCTAGTCCTCC
CTGCATACCAAGTCTGACCCACAAAGCCCTTATTAGGGTGGGAGTGGAGACATGCTTTCAGGGT
AGGTGAGTGGGTACAGTAGCTCAAGACAATCCAGAGAAGTGCTAAAGGAGTTTGCCAACGGCTG
GTGGCCATGTTAGACACCAGGCACTGTCTGTTTAAAGTGGAACTATATATATGAAGGTCTCAAA
GAGTTAATAAAAAATGTATCAGTAAATAAAATACCTAGTAAATACCTAGAGCCTGGGGAAATGG
CTCTGTGAGTAACGTGATTACTGTTTATGCATTTGAACCTGACATAGGTGTGGTAAGGTCCAGT
GCTGGTTGGGGAGCAGAGACAGGAAGATATCAGGGGCGCTCAGGCCAGCCAGCCTTACAGAAAG
AGCAAGCTCCAAGTTCACTGAGACTCCGAGGCAGAGATCGATTGAAGGAGAAAGTGATTGATTG
AGTCAGTCTTTAGTCGAAACATGTACCCACATGGGTGCACACGCATGCACATACATACTCCTCA
CATACAAAACTAACGAGTGGAACTCTATTGCTAGGGAGCTTCAAAAATATTGGTTCACCTGGTG
CCCGTTATTAAAGTTCTTTAGCACTGAGACTTCACCTGATTCCTGTTATTCATAAAGTTATTTT
TATACTGAGAACTAAAAAGACAGAATGCTGGGTCTTGCCTGTCTAATCCCAGCTGTCAGTAGAC
CAAGGCAGGCTTGTAAATTCAGGACTAACCTGGAGCTAGATGGCAAGACCGGTCTCAAGAGAAA
CAGCAACAAACAAGCAAACAAAAAAACAAAATTTTCTCAGTCTTCAATAATGTTTTGTTTTAGG
AAGTAGAGATGTGTGTTTCATTTAATAGAAAAAGTTCCCTAAAGCTAATTTCTACTGAGGCATG
TAGGAAGTGGTGTGGGACTGCTGTTGCTTTGTTTTGATTTTTAAGAAAGATATATTTACCTTTA
TGGTATGTGTTAGGGTGTTCTGCCTCCATGCGTTTCTGTGCACAGCATGTACACCGTAATTGTG
GAGGCCAGAAAGGGCATCAGAATCTTTAGAATTCATGTGGGTGCTGGAACTGAACCAGGTTCTC
TGCAAGAGCAGCAAGTACCCCAAATCACCAGTCCTCTCTCCAGCTCATTTGGGTTTCTTTGAGA
TTGGGTCTTACTGTATGGCCCACGCCAGCCTGAGACTTGAAACAATCCTGTATCCACCTCCTAA
GTGCCTAGGGTAACAGGCATACACTATAACACTTACAGCCTGGGCAGTTTTGGTTTTGGTTTTA
AGACATGATTCTTCATTGTGGGGGGGAAAGTATTCATATTTTAAAAGGTTTTCCAGGAACAACC
TTTACTTTCTGTCACATCTGCAAAATGGAGCTCCCCTCCCCCACTCTCTAGCTGTGTTTTGTGA
AATGGTTGCCGAGTTGAACCAGGAGTTGCCATATGTACTTTGTTGCCAGATGTCGCCCTCTTGT
GTTGAGGTGTAGCCTGCTGGGTACCGTTTTAAAGGCCTGGTAAAACAAGCTCAATTCCCGTCAC
TCGTCTGTGTACTAGGCAGATACTAGATAGGTCTTTTCTGCTTGGGCCAGCTTTAACTCTTCCC
TTGCTTTTAGATCCTACGTGTAGATGTTTTCTGGAGAAAAGCAGAGGCCGTTTCCACATTTGTT
CTTGGTAGGAGCACTCAGTGAGTGCCGTCTGCCTTTTTTTACTATATAGAGTGGTTACTCATTC
CTTCCGGGTAAGGTGGGTGTCAACAGCGCCTACCTCACAGGGGTGTTGTGGGGCTTTGTTCTAA
AATGGTTAGTGTGCTGAAGAAAAACCAACACGAGGAAGCAGTGCCACGGCTGGCCCTATTCAGT
ATTCCATCCAGTAGATTCTAGAACATGCTTGCAGCACCCGTGCACTACTTAATAAACAGTTCAT
CGAGAAGACTAGTTTTTCCCAAAATGCGCCAGAAATAGGAGTGCTGCTTGAGTTCTACTCTTCT
GTAGTATTTCTCACTACTGTTCAGCAAGGTAGATAGGATTTAGCATTGTTGGAAATAAAATATG
CTAATTCTAGCTAATGACATTTACTCCAAATACATTATTTTCATAAAAGGAAGAAAGAAAATAA
AAATCCCATCGTTTCTTGGATGAAGACGGTCTAAGTAGTAAAGAGGGATGGGACTGGAATGATT
ATCCGTAGGAACTCACTAATGTTCTCTTGAAGTAAAGCTGGACCACTTTCTCTGAACACTGAAG
GAAATGCCTGCTAGTCACGAAGGGAGAGCAAGCTGGAAAGCGGACAGACAGTTCCTGAGCCTGT
TTGCACAGACCGAGTCTTGATACTGAAACTAGGATTCCTGAAGAATACTTGATAGGTATTTTTG
TGGTAACTGTGCTAAAAATAGTTGATGTGGAAAATTTTTACAGTGTAACTTGTGTCTTTTAGTA
TACTTAAACTAAATATGTCTGTGGTGTTTCATTAATAAATTGTTAAGTTCCTAGGAGTGAACTC
TGTAAACACTAATGCACTCA

hide sequence

RefSeq Acc Id:

XM_039112269 ⟹ XP_038968197

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	100,807,083 - 100,831,316 (-)	NCBI
mRatBN7.2	6	95,070,699 - 95,095,739 (-)	NCBI

RefSeq Acc Id:

XM_039112270 ⟹ XP_038968198

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	100,807,083 - 100,831,316 (-)	NCBI
mRatBN7.2	6	95,070,699 - 95,095,739 (-)	NCBI

RefSeq Acc Id:

XM_039112271 ⟹ XP_038968199

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	100,807,083 - 100,818,966 (-)	NCBI
mRatBN7.2	6	95,070,699 - 95,083,326 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001420896	(Get FASTA)	NCBI Sequence Viewer
	NP_001420897	(Get FASTA)	NCBI Sequence Viewer
	NP_001420898	(Get FASTA)	NCBI Sequence Viewer
	NP_955790	(Get FASTA)	NCBI Sequence Viewer
	XP_006240298	(Get FASTA)	NCBI Sequence Viewer
	XP_006240299	(Get FASTA)	NCBI Sequence Viewer
	XP_038968197	(Get FASTA)	NCBI Sequence Viewer
	XP_038968198	(Get FASTA)	NCBI Sequence Viewer
	XP_038968199	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH61829	(Get FASTA)	NCBI Sequence Viewer
	EDM03658	(Get FASTA)	NCBI Sequence Viewer
	EDM03659	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000008424
	ENSRNOP00000008424.4
	ENSRNOP00000072081.3
	ENSRNOP00000100703.1

RefSeq Acc Id:

NP_955790 ⟸ NM_199496

- UniProtKB:

Q6P754 (UniProtKB/TrEMBL), A6HCA4 (UniProtKB/TrEMBL), A0A8I6AB68 (UniProtKB/TrEMBL), F7F1F5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDTASHSLVLLQQLNMQREFGFLCDCTVAIGDVYFKAHRAVLAAFSNYFKMIFIHQTSECIKIQ
PADIQPDIFSYLLHIMYTGKGPKQIVDHSRLEEGIRFLHADYLSHIATEMNQVFSPETVQTSNL
YGIQISTTQKTAVKQGLEIKDTPPSSSGNRAAAPGDHPQLQLSLAIGLDDGGAEQQRAHPAAQA
LEEHQKPPVTIKQERCDPESVISQSHSSSSSEVTGSSFTENSVKVHLCHYCGERFESRSNLRQH
LHTHVSGSLPFGVPASILESNDLGEVHPLSGSSEALECRRLGSFLAEEDGQQPRPPEHSGRGPS
EPLQISQVSVISKDTEPVELNCNFSFSRKRKISCTICGHKFLRKSQLLEHMYTHKGKSYRYNRC
QRFGNSLAQRFQQYCDSWPDVSLKTSRLSQEHLDLPCALESEMTQAGVDTILVE

hide sequence

RefSeq Acc Id:

XP_006240298 ⟸ XM_006240236

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDTASHSLVLLQQLNMQREFGFLCDCTVAIGDVYFKAHRAVLAAFSNYFKMIFIHQTSECIKIQ
PADIQPDIFSYLLHIMYTGKGPKQIVDHSRLEEGIRFLHADYLSHIATEMNQVFSPETVQTSNL
YGIQISTTQKTAVKQGLEIKDTPPSSSGNRAAAPGDHPQLQLSLAIGLDDGGAEQQRAHPAAQA
LEEHQKPPVTIKQERCDPESVISQSHSSSSSEVTGSSFTENSVKVHLCHYCGERFESRSNLRQH
LHTHVSGSLPFGVPASILESNDLGEVHPLSGSSEALECRRLGSFLAEEDGQQPRPPEHSGRGPS
EPLQISQVSVISKDTEPVELNCNFSFSRKRKISCTICGHKFLRKSQLLEHMYTHKGKSYRYNRC
QRFGNSLAQRFQQYCDSWPDVSLKTSRLSQEHLDLPCALESEMTQAGVDTILVE

hide sequence

RefSeq Acc Id:

XP_006240299 ⟸ XM_006240237

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDTASHSLVLLQQLNMQREFGFLCDCTVAIGDVYFKAHRAVLAAFSNYFKMIFIHQTSECIKIQ
PADIQPDIFSYLLHIMYTGKGPKQIVDHSRLEEGIRFLHADYLSHIATEMNQVFSPETVQTSNL
YGIQISTTQKTAVKQGLEIKDTPPSSSGNRAAAPGDHPQLQLSLAIGLDDGGAEQQRAHPAAQA
LEEHQKPPVTIKQERCDPESVISQSHSSSSSEVTGSSFTENSVKVHLCHYCGERFESRSNLRQH
LHTHVSGSLPFGVPASILESNDLGEVHPLSGSSEALECRRLGSFLAEEDGQQPRPPEHSGRGPS
EPLQISQVSVISKDTEPVELNCNFSFSRKRKISCTICGHKFLRKSQLLEHMYTHKGKSYRYNRC
QRFGNSLAQRFQQYCDSWPDVSLKTSRLSQEHLDLPCALESEMTQAGVDTILVE

hide sequence

Ensembl Acc Id:

ENSRNOP00000008424 ⟸ ENSRNOT00000008424

Ensembl Acc Id:

ENSRNOP00000072081 ⟸ ENSRNOT00000089594

RefSeq Acc Id:	XP_038968198 ⟸ XM_039112270
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038968197 ⟸ XM_039112269
- Peptide Label:	isoform X1
- UniProtKB:	Q6P754 (UniProtKB/TrEMBL), A6HCA4 (UniProtKB/TrEMBL), A0A8I6AB68 (UniProtKB/TrEMBL), F7F1F5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038968199 ⟸ XM_039112271
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000089222 ⟸ ENSRNOT00000114600

Ensembl Acc Id:

ENSRNOP00000100703 ⟸ ENSRNOT00000130542

Protein Domains

BTB C2H2-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6P754-F1-model_v2	AlphaFold	Q6P754	1-438	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694684

Promoter ID:

EPDNEW_R5199

Type:

single initiation site

Name:

Zbtb25_1

Description:

zinc finger and BTB domain containing 25

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	99,400,723 - 99,400,783	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:735076	AgrOrtholog
BioCyc Gene	G2FUF-37064	BioCyc
Ensembl Genes	ENSRNOG00000006441	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000008424	ENTREZGENE
	ENSRNOT00000008424.7	UniProtKB/TrEMBL
	ENSRNOT00000089594.3	UniProtKB/TrEMBL
	ENSRNOT00000130542.1	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
	Potassium Channel Kv1.1, Chain A	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:5599733	IMAGE-MGC_LOAD
InterPro	BTB/POZ-like	UniProtKB/TrEMBL
	BTB/POZ_fold	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
	ZnFinger_BTB_dom_contain	UniProtKB/TrEMBL
KEGG Report	rno:314245	UniProtKB/TrEMBL
MGC_CLONE	MGC:72618	IMAGE-MGC_LOAD
NCBI Gene	314245	ENTREZGENE
PANTHER	AGAP004733-PA	UniProtKB/TrEMBL
	ZINC FINGER AND BTB DOMAIN CONTAINING 49	UniProtKB/TrEMBL
	ZINC FINGER AND BTB DOMAIN-CONTAINING 25	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
Pfam	BTB	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
PhenoGen	Zbtb25	PhenoGen
PROSITE	BTB	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000006441	RatGTEx
SMART	BTB	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	BTB/POZ_fold	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A0A0G2K228_RAT	UniProtKB/TrEMBL
	A0A8I6AB68	ENTREZGENE
	A0ABK0LFS9_RAT	UniProtKB/TrEMBL
	A6HCA4	ENTREZGENE, UniProtKB/TrEMBL
	F7F1F5	ENTREZGENE, UniProtKB/TrEMBL
	Q6P754	ENTREZGENE
UniProt Secondary	Q6P754	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Zbtb25	zinc finger and BTB domain containing 25	Zfp50	zinc finger protein 50	Symbol and Name updated	1299863	APPROVED
2005-11-17	Zfp50	zinc finger protein 50	Znf46	zinc finger protein 46	Symbol and Name updated	1299863	APPROVED
2005-07-08	Znf46	zinc finger protein 46	ZNF46		Symbol and Name status set to approved	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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