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Gene: Tor1aip2 (torsin 1A interacting protein 2) Rattus norvegicus

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Symbol:

Tor1aip2

Name:

torsin 1A interacting protein 2

RGD ID:

735059

Description:

Predicted to enable ATPase activator activity and ATPase binding activity. Predicted to be involved in several processes, including endoplasmic reticulum organization; positive regulation of ATP-dependent activity; and protein localization to nuclear envelope. Predicted to be located in endoplasmic reticulum membrane and nuclear envelope. Predicted to be active in endoplasmic reticulum and membrane. Orthologous to human TOR1AIP2 (torsin 1A interacting protein 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cobalt dichloride.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

interferon alpha responsive; MGC72610; torsin A interacting protein 2; torsin-1A-interacting protein 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TOR1AIP2 (torsin 1A interacting protein 2)	HGNC	EggNOG, Ensembl, Inparanoid, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Tor1aip2 (torsin A interacting protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LOC100995923 (torsin-1A-interacting protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LOC106557472 (torsin-1A-interacting protein 2-like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	LOC106144612 (torsin-1A-interacting protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TOR1AIP2 (torsin 1A interacting protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LOC103230506 (torsin-1A-interacting protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Tor1aip2 (torsin 1A interacting protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	KDM5B (lysine demethylase 5B)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	TOR1AIP2 (torsin 1A interacting protein 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Tor1aip2 (torsin A interacting protein 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:dkeyp-82a1.6	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	zgc:112962	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	zgc:112962	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tor1aip1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	tor1aip1	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	tor1aip2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	TORIP	Alliance	DIOPT (Hieranoid\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	70,775,483 - 70,806,794 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	70,780,275 - 70,806,789 (+)	Ensembl				GRCr8
GRCr8 Ensembl	13	70,775,417 - 70,796,053 (+)	Ensembl				GRCr8
mRatBN7.2	13	68,225,226 - 68,256,536 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	68,225,171 - 68,244,575 (+)	Ensembl				mRatBN7.2
mRatBN7.2 Ensembl	13	68,230,009 - 68,256,536 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	10,698,707 - 10,701,050 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	72,130,283 - 72,156,805 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	10,424,011 - 10,426,355 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	73,704,088 - 73,735,339 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	73,708,815 - 73,720,429 (+)	Ensembl			rn6	Rnor6.0
Rnor_6.0 Ensembl	13	73,708,815 - 73,735,339 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	78,629,216 - 78,660,388 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	71,076,913 - 71,103,437 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	68,092,630 - 68,119,154 (+)	NCBI		Celera
RGSC_v3.1	13	71,091,143 - 71,115,159 (+)	NCBI
Cytogenetic Map	13	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

acrolein (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

alpha-pinene (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

Benzo[ghi]perylene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

casticin (ISO)

CGP 52608 (ISO)

cobalt dichloride (EXP)

copper(II) sulfate (ISO)

coumarin (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (EXP)

dioxygen (ISO)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

gentamycin (EXP)

hexadecanoic acid (ISO)

hydrazine (ISO)

hydrogen peroxide (ISO)

lipopolysaccharide (ISO)

metam (ISO)

methapyrilene (EXP)

methylmercury chloride (ISO)

nickel atom (ISO)

ozone (ISO)

paracetamol (EXP)

pentachlorophenol (ISO)

PhIP (ISO)

pirinixic acid (ISO)

resveratrol (ISO)

rotenone (ISO)

sodium arsenite (ISO)

Soman (EXP)

testosterone (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

trovafloxacin (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

endoplasmic reticulum organization (IBA,IEA,ISO,ISS)

membrane organization (IBA)

positive regulation of ATP-dependent activity (ISO,ISS)

protein localization to nuclear envelope (IEA,ISO)

Cellular Component

endomembrane system (IEA)

endoplasmic reticulum (IBA,IEA,ISO,ISS)

endoplasmic reticulum membrane (IEA)

membrane (IBA)

nuclear envelope (IEA)

Molecular Function

ATPase activator activity (IEA,ISO,ISS)

ATPase binding (IEA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334	PMID:15767459	PMID:19339278	PMID:23569223	PMID:24275647	PMID:25002582

Genomics

Comparative Map Data

Tor1aip2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	70,775,483 - 70,806,794 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	70,780,275 - 70,806,789 (+)	Ensembl				GRCr8
GRCr8 Ensembl	13	70,775,417 - 70,796,053 (+)	Ensembl				GRCr8
mRatBN7.2	13	68,225,226 - 68,256,536 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	68,225,171 - 68,244,575 (+)	Ensembl				mRatBN7.2
mRatBN7.2 Ensembl	13	68,230,009 - 68,256,536 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	10,698,707 - 10,701,050 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	72,130,283 - 72,156,805 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	10,424,011 - 10,426,355 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	73,704,088 - 73,735,339 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	73,708,815 - 73,720,429 (+)	Ensembl			rn6	Rnor6.0
Rnor_6.0 Ensembl	13	73,708,815 - 73,735,339 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	78,629,216 - 78,660,388 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	71,076,913 - 71,103,437 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	68,092,630 - 68,119,154 (+)	NCBI		Celera
RGSC_v3.1	13	71,091,143 - 71,115,159 (+)	NCBI
Cytogenetic Map	13	q22	NCBI

TOR1AIP2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	179,839,976 - 179,877,803 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	179,839,967 - 179,883,034 (-)	Ensembl			hg38	GRCh38
GRCh37	1	179,809,111 - 179,846,938 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	178,080,576 - 178,113,557 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	1	152,920,678 - 152,954,553 (-)	NCBI		Celera
Cytogenetic Map	1	q25.2	NCBI
HuRef	1	151,040,947 - 151,078,786 (-)	NCBI		HuRef
CHM1_1	1	181,232,909 - 181,270,748 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	179,195,724 - 179,233,552 (-)	NCBI		T2T-CHM13v2.0

Tor1aip2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	155,911,410 - 155,944,607 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	155,911,149 - 155,944,607 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	156,035,664 - 156,068,861 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	156,035,403 - 156,068,861 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	157,882,794 - 157,915,991 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	157,813,801 - 157,831,079 (+)	NCBI		MGSCv36	mm8
Celera	1	158,473,578 - 158,506,940 (+)	NCBI		Celera
Cytogenetic Map	1	G3	NCBI
cM Map	1	67.7	NCBI

LOC100995923
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	69,889,565 - 69,927,350 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	69,548,283 - 69,585,624 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	155,321,181 - 155,358,966 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	159,005,944 - 159,039,058 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	159,005,944 - 159,039,058 (-)	Ensembl			panPan2	panpan1.1

LOC106557472
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	13,411,955 - 13,453,366 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	13,414,910 - 13,435,161 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	12,991,279 - 13,032,749 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	13,139,184 - 13,180,671 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
UMICH_Zoey_3.1	7	13,050,727 - 13,092,184 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	13,156,661 - 13,198,056 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	13,281,493 - 13,322,972 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

LOC106144612
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	91,423,748 - 91,432,034 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936481	9,266,527 - 9,280,289 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TOR1AIP2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	121,476,503 - 121,518,506 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	121,476,501 - 121,516,611 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

LOC103230506
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	49,496,515 - 49,532,881 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	49,509,484 - 49,530,723 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666055	50,891,475 - 50,931,101 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tor1aip2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	35,461,819 - 35,474,007 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Tor1aip2
170 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	1686
Count of miRNA genes:	375
Interacting mature miRNAs:	547
Transcripts:	ENSRNOT00000050734, ENSRNOT00000071482
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298066	Bp159	Blood pressure QTL 159		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	48639634	93639634	Rat
10755495	Bp387	Blood pressure QTL 387	3.78		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37216241	90057603	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
70220	Bp55	Blood pressure QTL 55	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
71119	Thym2	Thymus enlargement QTL 2	3.8		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	13	48749814	87285480	Rat
4889861	Pur29	Proteinuria QTL 29	13.8	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	39968211	83286298	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	67635937	109350286	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	7421791	87286911	Rat
61340	Bp25	Blood pressure QTL 25	4.2	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37087983	82087983	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
1549897	Stresp12	Stress response QTL 12	3.35		stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	13	40983585	85983585	Rat
724564	Uae11	Urinary albumin excretion QTL 11	5.7		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	13	47354258	94285672	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
738027	Lnnr6	Liver neoplastic nodule remodeling QTL 6	3.3		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	65613454	109350286	Rat
7387280	Uae43	Urinary albumin excretion QTL 43	5.69	0.4174	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	68983334	109350286	Rat
738026	Lnnr5	Liver neoplastic nodule remodeling QTL 5	3.29		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	62424592	88113509	Rat
1558644	Cm45	Cardiac mass QTL 45	3.6	0.002	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	13	26244808	71244808	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	13	33794096	78794096	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	67635937	109350286	Rat
61349	Bp31	Blood pressure QTL 31	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
1576318	Schws5	Schwannoma susceptibility QTL 5		0.0351	nervous system integrity trait (VT:0010566)	post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)	13	64497900	109350286	Rat
2303563	Bw89	Body weight QTL 89	6		body mass (VT:0001259)	body weight (CMO:0000012)	13	34834947	79834947	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
12879477	Bp401	Blood pressure QTL 401			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	39814726	84814726	Rat
1331750	Bp220	Blood pressure QTL 220	2.98		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	39968211	84968211	Rat
6893338	Cm76	Cardiac mass QTL 76	0	0.99	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	13	26244808	71244808	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	64375743	109350286	Rat
11530006	Niddm72	Non-insulin dependent diabetes mellitus QTL 72		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	38286298	83286298	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	67635937	109350286	Rat

Markers in Region

RH131284

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	68,242,251 - 68,242,452 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	73,721,058 - 73,721,258	NCBI	Rnor6.0
Rnor_5.0	13	78,646,107 - 78,646,307	UniSTS	Rnor5.0
RGSC_v3.4	13	71,089,156 - 71,089,356	UniSTS	RGSC3.4
Celera	13	68,104,873 - 68,105,073	UniSTS
Cytogenetic Map	13	q21	UniSTS

RH134550

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	68,240,642 - 68,240,837 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	73,719,449 - 73,719,643	NCBI	Rnor6.0
Rnor_5.0	13	78,644,498 - 78,644,692	UniSTS	Rnor5.0
RGSC_v3.4	13	71,087,547 - 71,087,741	UniSTS	RGSC3.4
Celera	13	68,103,264 - 68,103,458	UniSTS
Cytogenetic Map	13	q21	UniSTS

RH139660

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	68,256,102 - 68,256,305 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	73,734,906 - 73,735,108	NCBI	Rnor6.0
Rnor_5.0	13	78,659,955 - 78,660,157	UniSTS	Rnor5.0
RGSC_v3.4	13	71,103,004 - 71,103,206	UniSTS	RGSC3.4
Celera	13	68,118,721 - 68,118,923	UniSTS
RH 3.4 Map	13	355.6	UniSTS
Cytogenetic Map	13	q21	UniSTS

AA892455

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	68,253,756 - 68,253,936 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	73,732,561 - 73,732,740	NCBI	Rnor6.0
Rnor_5.0	13	78,657,610 - 78,657,789	UniSTS	Rnor5.0
RGSC_v3.4	13	71,100,659 - 71,100,838	UniSTS	RGSC3.4
Celera	13	68,116,376 - 68,116,555	UniSTS
RH 3.4 Map	13	355.7	UniSTS
Cytogenetic Map	13	q21	UniSTS

AA892455

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	68,253,664 - 68,253,775 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	73,732,469 - 73,732,579	NCBI	Rnor6.0
Rnor_5.0	13	78,657,518 - 78,657,628	UniSTS	Rnor5.0
RGSC_v3.4	13	71,100,567 - 71,100,677	UniSTS	RGSC3.4
Celera	13	68,116,284 - 68,116,394	UniSTS
RH 3.4 Map	13	355.7	UniSTS
Cytogenetic Map	13	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
25	23	116	278	181	179	117	117	117	12	572	289	11	237	125	151	62	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001165896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001165897	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_199100	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250043	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250044	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090735	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090736	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC061831	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB804669	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK478392	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CO565924	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CV107022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DV728294	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EV767100	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ219764	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222366	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225160	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231625	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000050734 ⟹ ENSRNOP00000039176

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	70,780,275 - 70,806,789 (+)	Ensembl
mRatBN7.2 Ensembl	13	68,230,009 - 68,256,536 (+)	Ensembl
Rnor_6.0 Ensembl	13	73,708,815 - 73,735,339 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000071482 ⟹ ENSRNOP00000064775

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	68,225,171 - 68,242,680 (+)	Ensembl
Rnor_6.0 Ensembl	13	73,708,815 - 73,720,429 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000077874 ⟹ ENSRNOP00000071656

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	70,775,417 - 70,794,173 (+)	Ensembl
mRatBN7.2 Ensembl	13	68,230,000 - 68,244,575 (+)	Ensembl
Rnor_6.0 Ensembl	13	73,708,815 - 73,720,429 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000104928 ⟹ ENSRNOP00000084434

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	70,780,096 - 70,794,083 (+)	Ensembl
mRatBN7.2 Ensembl	13	68,229,967 - 68,244,527 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112812 ⟹ ENSRNOP00000094778

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	70,780,275 - 70,806,789 (+)	Ensembl
mRatBN7.2 Ensembl	13	68,230,009 - 68,256,536 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113054 ⟹ ENSRNOP00000093148

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	68,247,896 - 68,256,536 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000148385 ⟹ ENSRNOP00000106683

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	70,780,441 - 70,796,053 (+)	Ensembl

RefSeq Acc Id:

NM_001165896 ⟹ NP_001159368

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	70,780,270 - 70,791,884 (+)	NCBI
mRatBN7.2	13	68,230,009 - 68,241,623 (+)	NCBI
Rnor_6.0	13	73,708,815 - 73,720,429 (+)	NCBI
Rnor_5.0	13	78,629,216 - 78,660,388 (+)	NCBI
RGSC_v3.4	13	71,076,913 - 71,103,437 (+)	RGD
Celera	13	68,092,630 - 68,104,244 (+)	NCBI

Sequence:

show sequence

CGGCTGGGGGTTGCAGACCAGCGCTGTGGAGCAGGAGGGACAGCCGAGTGGCGCCGCTGATCCT
GACTGTCCCATATTTTAAAACCTGGCTGGAAATTGTCTTTGAAAAAGGATCCCTCCCCACCCCC
ACCTCCCCTACGGCACAAACAGAAATCGAGGTGTGACGCATTCCCAGACCGTCCCCCAAACTCA
ACACCAGCAACTTCTCTGTGACTGGGTCCAGATAAAGGTCCTTTCAAGACTGACGTCACTGGAT
CTACTCCACCAGGTCTTCCTGACCCTACTGTATCACTGTAGTGTTTCTGGCGAGACTGCCCGCA
CCAACAGAAGACTCACCGGATCCACCAGCACATCTTTCACCAGCAAGCATCTTACCAGCAGAGC
ACAGCCTCTGTATGATTCTGCCTCCAGCTGACACTGACAGGAAAAGGCATCCGGCTTGGATTAG
AGGCCTGGCTTTCTTTAGAAGGAGCTATTCTGTGATCTGTGCTGCTAGTAAGTGACTGACGTGT
TGTAGACTGGACTGGTCCCTGAGTACAGAGACTGAGTTGCAATTGAGTGAAGAATAAACAAGAT
CTGGAAGAACAGCACTAAGGTGCAAGCCAGGTTCAGCAGTCCAGTATTGCTGCACTGACAAGTG
GCTAAAGGAAACTGTAACGGGACTGATTGTCGCTTACTGCTTTCCTCTCTGTCATTGTTGCTTT
TTGTTGTTCCATTGCTTTGTGTTGTCTTTCTAAGCCCAGATGTTCTCTGATAATTCACACTGCC
CTGATTGTGGGCAGCAGTGGTTCCCTAGTTTAGAACTAGGCCACTGGTTGTACCAAACTGAACT
TGTTGAAAATGAATGTTACCAAGTGTTCTTAGACCGTATTAACAGGGCTGATTATTGCCCTGAA
TGTTACCCTGACAATCCTGCTAACAGAAGCCTTGTTCTGCCTTGGTCTTTCCCACTTGAGTGGG
CACCTCAGAATCTCACCAGGTGGACCTTTGAGAAAGCTTGCCATCCATTTCTTCTGGGCCCTCC
ACTGGTTAGAAAAAAGATACATGACTCCAGGGTAGCTGGGTTTAATCCTGCGTTACAGTTAATC
TTGAGCAGAACAGACAAAACCTTAAACAAGAAACTTGGCCAAAGCAAGTGACTTCTGTAACAGA
ATCATGGAGACTCTCAAGGGCTTTGTGTTCATAGCCTAGTGGAGGAGAAGAATTAACTTGTTTC
TGTTTTCCTTCTCTTTTTCTTTCTTAATTTTTTTTAAGGTGCTGGGGATTGGATCTGGGTGCCT
TGTGCATGCTAGGCAAGTGCCCTTCCACTGAGTTAAAACCAAGGCTCCCCTTTCTAAGGCTGAC
TCAGACTGCTGTCACTACTCTGTCAACTGCTTCAATCGTTGGGTCTGCTTCTGTGGTCTATGCA
TATTTTAGCATAAATTTAGTTGAAATGGCAGCCAGTGTATTTACCTAGACCCACACTAACCTAT
AGCCCCTATAAATGCTTTAGAACTACCTGGCCCCTCCTGAAAATTGCCACAGCCTAAGTATTGA
CAAGATAATGTGGTCCTAGCAGGGAGGCCCCATGGTGTATGCCTCATTAAGTGTTTTTCTATCA
GTACCTGTTATGAGAACATGTTCTTGTAGCTGGATTCTAGATTATTCTAATAAATTTTAATACA
CTACATTGTTCTAATTTTCTCTAATATATTGATCAATAATGAGAGATGTGTGTATGTACATGTA
AATTTTTTTTCATATAGATAACCATTCTTTGACACTGTTTTATCCTCAGTGTAAGTATTACAGT
GTTGATAACTGGTCCTGTCACATACTATTTGGCAATACCTACACAGGTTGCAAAAGATGTGTTA
ATGCTACCAGTTTACAATTATTCGTCTCTATATAACCAAAGACTGTCTTGTCTTGTGGTGACGG
AACTCAATGGCCTCCCATGGAAGGGGAATTTATAACAGATGATAAAGCTTGACTCCATATAATT
GAAGAATAATTTAGACCTAGTGGATGCTCTGTCTTAAACATAAGAATGTGCTGTTGAACCTCAG
CCACATTCTAGGATTCATTTGGAGTTAAGCAGCTTAGACGAAGCCCCTGGAAACATCCAAGAAG
CCACTGAACATTTTAAAATTCCAGGTGAGCCAGTGCCTGTGTAGAAGCAGAAATGTCAAGGACC
CGGGTTCTTCTCTTTCCTCTCTGGGGTCTTTATAGTCTCTGTTCTCGTGACAGTTTTTAAATGG
GTTCAGTATGGTTTGTTGTGCCAGATATTTCCATTGCAACCAGAAGCAGGGGGCACCTGGCTTG
CTTTCTTACACGTCTTAATTTGGAAATAAAATCTTCTTAAAGCGA

hide sequence

RefSeq Acc Id:

NM_001165897 ⟹ NP_001159369

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	70,780,270 - 70,791,884 (+)	NCBI
mRatBN7.2	13	68,230,009 - 68,241,623 (+)	NCBI
Rnor_6.0	13	73,708,815 - 73,720,429 (+)	NCBI
Rnor_5.0	13	78,629,216 - 78,660,388 (+)	NCBI
RGSC_v3.4	13	71,076,913 - 71,103,437 (+)	RGD
Celera	13	68,092,630 - 68,104,244 (+)	NCBI

Sequence:

show sequence

CGGCTGGGGGTTGCAGACCAGCGCTGTGGAGCAGGAGGGACAGCCGAGTGGCGCCGCTGATCCT
GACTGTCCCATATTTTAAAACCTGGCTGGAAATTGTGTGACGCATTCCCAGACCGTCCCCCAAA
CTCAACACCAGCAACTTCTCTGTGACTGGGTCCAGATAAAGGTCCTTTCAAGACTGACGTCACT
GGATCTACTCCACCAGGTCTTCCTGACCCTACTGTATCACTGTAGTGTTTCTGGCGAGACTGCC
CGCACCAACAGAAGACTCACCGGATCCACCAGCACATCTTTCACCAGCAAGCATCTTACCAGCA
GAGCACAGCCTCTGTATGATTCTGCCTCCAGCTGACACTGACAGGAAAAGGCATCCGGCTTGGA
TTAGAGGCCTGGCTTTCTTTAGAAGGAGCTATTCTGTGATCTGTGCTGCTAGTAAGTGACTGAC
GTGTTGTAGACTGGACTGGTCCCTGAGTACAGAGACTGAGTTGCAATTGAGTGAAGAATAAACA
AGATCTGGAAGAACAGCACTAAGGTGCAAGCCAGGTTCAGCAGTCCAGTATTGCTGCACTGACA
AGTGGCTAAAGGAAACTGTAACGGGACTGATTGTCGCTTACTGCTTTCCTCTCTGTCATTGTTG
CTTTTTGTTGTTCCATTGCTTTGTGTTGTCTTTCTAAGCCCAGATGTTCTCTGATAATTCACAC
TGCCCTGATTGTGGGCAGCAGTGGTTCCCTAGTTTAGAACTAGGCCACTGGTTGTACCAAACTG
AACTTGTTGAAAATGAATGTTACCAAGTGTTCTTAGACCGTATTAACAGGGCTGATTATTGCCC
TGAATGTTACCCTGACAATCCTGCTAACAGAAGCCTTGTTCTGCCTTGGTCTTTCCCACTTGAG
TGGGCACCTCAGAATCTCACCAGGTGGACCTTTGAGAAAGCTTGCCATCCATTTCTTCTGGGCC
CTCCACTGGTTAGAAAAAAGATACATGACTCCAGGGTAGCTGGGTTTAATCCTGCGTTACAGTT
AATCTTGAGCAGAACAGACAAAACCTTAAACAAGAAACTTGGCCAAAGCAAGTGACTTCTGTAA
CAGAATCATGGAGACTCTCAAGGGCTTTGTGTTCATAGCCTAGTGGAGGAGAAGAATTAACTTG
TTTCTGTTTTCCTTCTCTTTTTCTTTCTTAATTTTTTTTAAGGTGCTGGGGATTGGATCTGGGT
GCCTTGTGCATGCTAGGCAAGTGCCCTTCCACTGAGTTAAAACCAAGGCTCCCCTTTCTAAGGC
TGACTCAGACTGCTGTCACTACTCTGTCAACTGCTTCAATCGTTGGGTCTGCTTCTGTGGTCTA
TGCATATTTTAGCATAAATTTAGTTGAAATGGCAGCCAGTGTATTTACCTAGACCCACACTAAC
CTATAGCCCCTATAAATGCTTTAGAACTACCTGGCCCCTCCTGAAAATTGCCACAGCCTAAGTA
TTGACAAGATAATGTGGTCCTAGCAGGGAGGCCCCATGGTGTATGCCTCATTAAGTGTTTTTCT
ATCAGTACCTGTTATGAGAACATGTTCTTGTAGCTGGATTCTAGATTATTCTAATAAATTTTAA
TACACTACATTGTTCTAATTTTCTCTAATATATTGATCAATAATGAGAGATGTGTGTATGTACA
TGTAAATTTTTTTTCATATAGATAACCATTCTTTGACACTGTTTTATCCTCAGTGTAAGTATTA
CAGTGTTGATAACTGGTCCTGTCACATACTATTTGGCAATACCTACACAGGTTGCAAAAGATGT
GTTAATGCTACCAGTTTACAATTATTCGTCTCTATATAACCAAAGACTGTCTTGTCTTGTGGTG
ACGGAACTCAATGGCCTCCCATGGAAGGGGAATTTATAACAGATGATAAAGCTTGACTCCATAT
AATTGAAGAATAATTTAGACCTAGTGGATGCTCTGTCTTAAACATAAGAATGTGCTGTTGAACC
TCAGCCACATTCTAGGATTCATTTGGAGTTAAGCAGCTTAGACGAAGCCCCTGGAAACATCCAA
GAAGCCACTGAACATTTTAAAATTCCAGGTGAGCCAGTGCCTGTGTAGAAGCAGAAATGTCAAG
GACCCGGGTTCTTCTCTTTCCTCTCTGGGGTCTTTATAGTCTCTGTTCTCGTGACAGTTTTTAA
ATGGGTTCAGTATGGTTTGTTGTGCCAGATATTTCCATTGCAACCAGAAGCAGGGGGCACCTGG
CTTGCTTTCTTACACGTCTTAATTTGGAAATAAAATCTTCTTAAAGCGA

hide sequence

RefSeq Acc Id:

NM_199100 ⟹ NP_954531

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	70,780,270 - 70,806,794 (+)	NCBI
mRatBN7.2	13	68,230,009 - 68,256,536 (+)	NCBI
Rnor_6.0	13	73,708,815 - 73,735,339 (+)	NCBI
Rnor_5.0	13	78,629,216 - 78,660,388 (+)	NCBI
RGSC_v3.4	13	71,076,913 - 71,103,437 (+)	RGD
Celera	13	68,092,630 - 68,119,154 (+)	RGD

Sequence:

show sequence

CGGCTGGGGGTTGCAGACCAGCGCTGTGGAGCAGGAGGGACAGCCGAGTGGCGCCGCTGATCCT
GACTGTCCCATATTTTAAAACCTGGCTGGAAATTCCACTGTCGATATCCCTTGCTTCTTGCTTC
CATGGGAAGCATGAGTCTATTGGAACTTGGGACAAGAAGAAATCAAGGTATCTCTACTACAGAG
CCCAGACACTAAACACATGTCCCAAACTCTGAAGAGCCAGGACACAAACATGAGTGACAGTGGC
TACAGGGATCCTGTGGAAGACTCTCAAAACGTTTTGGGAAATGATCCATCAGTAAACTCTCAAG
CACAGGACCCCATAGTCACACCGAGTAACACTGTGGAAGCCCAGACCCTACATCCCACATCTGA
TCTTAAGGAAGACCATCATGAAATAGGGGCCAAAGGTCAGGAGCATGCAGACACAGGTGACAGG
GCAGAAAGTTCTGAGGAACCAGCTTTGGAGAAACCTCCACTGGATAAAGCAGAACTGGAGAGGA
GCCCGAGTTCTCAGGACACAGAGCAAAGGCATCACCCCTACTCGGAACATGTGGGCGGAGACAC
CCTGGTTCTGGATCCTAACTACTCTCAAAGCGACTTGGGAGGAAGAGCGGATGCACACCTGGAG
AGCAGCTCTGCAGCCCCCACAGAGGGGGCAGGTGAGGGAGGTGAAGCAGGTGCACACCTGGAGA
GCAGCTGTGCAGCCCTCCCAGTGGGAGCAGATGAGGGAGGAAGAGCGAATGCACACCTGGAGAG
CAGCTCTGCAGCCCCCACAGAGGGGGCAGGTGAGGGAGGTGAAGCAGATGTACACCTAGAAAGC
AGCTCTGCAGTCCCCCCAGAGGAGGCCCATCTGGAGAGCAGCTCTGCAGCCCCCTCAGAGGGGG
CAGGTGAGGGAGGTGAAGCAGATGCACACCTGGAGAGCAGCTCTGCAGCCCCTTCAGAGGGGGC
AGGTGAGGGAGGTGAAACTGCTCAGAACCTACTTGCTGTAGACTCTACCGATGCCCAGAGTCCC
TGTCACTCCAGTGCAGGCCCAGGGAGCCAGGATTCACTGAGGAGAAGACTGCCTGTGACAGAGG
CTGAAAGGCATGAAGAAGAGACACAGTTGGTGACGGAAAAGGAGGAGGTCGCACAGGAAACATT
GAGAAAGACTGAGAAAAAGAGTCTCTGGACCTATGGTTCCATGTTTCTTGGCTGCCTGATTGTG
GCTGTGGTGCTAAGCTCTGTCAACAGCTACTATTCCTCCCCAGCTCAGCAGGTGCCACAGAACC
CAGCTCTGGAGGCCTTCCTGGCTCAGTTTAGCCAACTGAGGGAGAAATTTCCAGGTCAGAGTGC
CTTCCTGTGGCAGCGAGGGCGTAAGTTTCTCCAGAAGCACCTCAACGCCTCAAACCCCAGTGAG
CCAGCCACCGTCATCTTCACAGCTGCTCGAGAGGGGAAGGAGACCCTCAAGTGCCTGAGCTACC
ACGTGGCCAATGCCTACACCTCTTCCCAGAAGGTAACTGCCGTCTCCATAGACGGAGCGGAGAG
AGCCCTGCAGGACAGTGACACAGTCAAGCTGTTGGTTGACTTGGAGCTCAGCTATGGGTTTGAG
AATGGCCACAAGGCTGCTGTAGTCCACCACTTCGAATCCCTTCCTGCGGGCTCCACCCTGATCT
TCTACAAGTACTGTGACCACGAGAACGCCGCCTTTAAAGATGTGGCCCTTGTCCTGACCGTCCT
GCTGGAGGAGGAAACGTTAGAAGCAAGTGTAAGCCCCAGGGAAACAGAAGAAAAAGTGAGGGAT
TTGCTCTGGGCCAAGTTCACCGACTCCGGAACTCCCAGCTCCTTCAGCCACATGGACTCAGACA
AACTGAGTGGACTCTGGAGCCGTATCTCCCACCTCGTGCTGCCCGTGCAGCCCGTCAAGAACAT
AGAAGAGCGAGGCTGCCTTTTGTGAAGCCAGCCACCAAGGTGACATTGAAGGGCCAGGCCTGAG
GGCTCTGTTGCAATGGGAGGAGGTGATTGGCACGTGAGAGGAAACAGCTGGTGCACGAGACTTT
ATGTTGGAAAAGAAGCCTTTTTTTCCTTTTACTTTTATAAAAACTTTCTAGTCTGAACTTTGAT
AAAACTAACAATTGGCCTGATGTTTTTCTTTGTCTTTTAAAGCCAATCAGGTTGATGTATGTAT
GGATCGTTTAGGTGTCCAGCCCATTGGTAGAATCGTTGCACAGGAAGTTCTGATTCTCCGGGAA
CTGCACTACCACTGCTGTCCTGCAAGGACTCTAACCGGCCACCAGGGCCATGTTTGGACCTGGA
CTAGGCGTAATTCCAATGATTTTAGAGGACACTTCTACCACATCTTAAGTTCTTTCTAAGATTC
ACTTTAATAATGCACTCGTGGGGTTGGTTGTATCTTACACAGATTTGCACTTTGACTAGGTGAA
AACAGGAAATTACAGTTCAGCCCCCCCCAGACCTACCTAAGAACCTGGTGTGTGTATGCTTTTA
TTCCGTTAAGGAGCTGAGGTAGGAACAGCTGCTCTCAAACGAACAAACAAAAATGTTCCCAAGC
ATCAATGTAGAAATTGTTAGTAATCACCAGAAATAAAAAAATCCCAACTGGCGATATCATTTCT
CTGTGCCTACCCGCGGCCCCTCCTCCCTATGAGAGCATGCCTGCCCTTGGCTGCTGCTGGTATT
TTGGCTTCTCTGTTAAGATTTCGGTGGAACTGAGTTTCACCGAAAGGAAGTTTAAAAACCCTTG
ATGAAGTGAAAGCACATTCTAGAATAGGAAGTTGGATAGGAAGAAATGGCAGGGTTAGGAGTTG
ACCAGGGTTACAAAGACCTGCAGGTGAGCTAGCTACTCGAGGATGTCTGTTGGTCTTTCTGGCT
TCCCCACTGGAATTTCACATTTGTCTGTGGTAAGAGTCTGAGTGCTGTTTCAGAAAAGACTTGA
GTAATAGCAGCTGCTGCAGGAGGATGTTCTCCATAGGGGACAGGAAGAGGAATCATGGCCAGTG
TCAGTTGTTAAGCTTCGTCCCATGATTTCAGACTGGGCCAATAGCTGTTGATCAGCACATGAAC
TCTGAAAGTAAAACGCTAGTAAAATGATCTTGACCCTCATCCATTACATGGGTGGGGAAAAAGC
CCTTGGAACTTGGCACTCAGTTTTGGGTCATCTGCTGCTATGAGATCATGTATGTAGTTGAGAC
ATTAAGCCACAGAGTCTAGAGGGATTTTAGGAAACACTAAGATTTCTATTGATAGTTAAAAGGA
TCACAGAGGCCCTCGTGAGAGGTAATCTGAAAATATTTACCATAAAATGGCTTTGGCCAGAGCC
TTTGGTGTTAAGTAAGTTAATTATGGGGGCCCAGGTGAAGCAGTACGCATTTGGAATTTTGAAG
GTATCCTGAAATAGACGTAAGAAAAAACCCTACACAAAATTTAAGCATGGTGAATGGGGTTTTA
CTGTTAAACCAGTGTAAAACACAGGGACTGTAGAAAAATCTGTCTGCCATATTTGATTTTTCTT
TTTTCTTCTGTATTTCTAAACTCACTTGTTTCGAATGCTAGTGGCTTGTCATAGAGCCATGCTG
GCCTGGTGCTTACCCTGTGGTGTAGGCTGACTTTGAACTTACAGTGATTTTTCCTACCTCGGCT
TCCTGAGTGCTGAGGCTATAGGTGTGTACCGTTGTACTCAGCTCTTAGCTACTAACATTACATC
ACGTAAAGCCACGTCAGAAGGCGCCTTGCAGAGCTGCTGTGTTGGCCTTTGACCTGTGCTCCAG
AGGAACTGTGGAGAGGACGCTAGAGGAACTGGTCAGCAGTATTTGTATACAGTCTGTGTCAGGG
ACTCAGGTCACAGGTGAACTAGGTAATCATTTCTTCATTAAAACTGTAAAACTACAGCCTTACA
AAGTTTGCTGTTAACAAAAATTCAGGATATAATACATTCTAGAAATTTATTTTCATCTTTTTCC
TATTTACCTTGTTAAAAAACACTTTTCCTCATACGTGCAATCAACTGAGACTCATCAGTTTTCT
ACACTGTTTCAAATCCTCCGGCCTTAACATTCATTCAAGGAGAGTGCCCTATCACTAAGCTGTA
TTCCCAGACCTTTAAAAAATAATTTTGAAAAAAACCCCAAAAAACAGTATATGTTTGTTTGGGG
TCAGAACAAATGATTTTCTGTTTTTGATACAGAGTCTGTACATAGCCCAAAGTAGTAATTCTCA
AGCCTTAGACTTTTACATAATGAGATTCTAGGAGTGTGCCGCCATACCAGCTCAGTGCAGTTAC
TTTTAAAACAAAAATATACTTTAAAATGTATACATATCTATTTTCAACTGAACACACACACACA
CACACACACACATACATACATAACACACACACACATACACATTGGTGGTGTTTTTGTTTTTTTG
TTTTGTTTTGTTTTAAATAGGAATCCCTTCTTGAGTAATACCAAGTCTCTGAAACAAGCAGGGG
AAATAGAAACTGTCTTTAGACTTGAGTCTCGCTTTCCCTTTCAGGTAAAATTTAGGGTTCTTAG
GGTTCTTTTAGGTAGTTCTCAGAGATCATCAGAGAAGTTCTAGAGAGTTCTTATCCCTGAACTA
ATTTGAACAAATTTTATCTGGAAGTTCGGAGGCTTGGGGGAGGGTAGTGAGGATCAGTGCCCTT
CCTGTCGGCCCACCCTAACAGTGCTGGCTGATGGAGGGGACAGCTTTGTCTCAAGGCCTTTGGT
TCACATTCTCGTTTAAGGCCGGAGCACTGTGAGCACAGATGCTGGGTATGGCAGACAGATGTGA
ACACGAGAGAAATGCAGCAAAACGATGACCAGCAACACGCTTACATTCTCTATCAAGGATTTCT
TAGCCCCAAGAATCCTGCCTTGATGTATTCACAAATTTAACGGCTTGTCAGACTTTTCAAGTCA
CCATAACTGCTTTTTTGCATTTGTTTCCATATTGATGATGTTGAATGTGCCTTATTCAAATCAA
CTGTCATTTACAATAAATTGCCTTGATTTTTCCTAGTTGCTTGATTTTTGACTAAAATTTCCAA
AATAAAGAGTTTATGGAAATGGG

hide sequence

RefSeq Acc Id:

XM_006250043 ⟹ XP_006250105

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	70,789,889 - 70,806,790 (+)	NCBI
mRatBN7.2	13	68,239,630 - 68,256,532 (+)	NCBI
Rnor_6.0	13	73,718,486 - 73,735,335 (+)	NCBI
Rnor_5.0	13	78,629,216 - 78,660,388 (+)	NCBI

Sequence:

show sequence

CTCCAGCTGACACTGACAGGAAAAGGCATCCGGCTTGGATTAGAGGCCTGGCTTTCTTTAGAAG
GAGCTATTCTGTGATCTGTGCTGCTACCACTGTCGATATCCCTTGCTTCTTGCTTCCATGGGAA
GCATGAGTCTATTGGAACTTGGGACAAGAAGAAATCAAGGTATCTCTACTACAGAGCCCAGACA
CTAAACACATGTCCCAAACTCTGAAGAGCCAGGACACAAACATGAGTGACAGTGGCTACAGGGA
TCCTGTGGAAGACTCTCAAAACGTTTTGGGAAATGATCCATCAGTAAACTCTCAAGCACAGGAC
CCCATAGTCACACCGAGTAACACTGTGGAAGCCCAGACCCTACATCCCACATCTGATCTTAAGG
AAGACCATCATGAAATAGGGGCCAAAGGTCAGGAGCATGCAGACACAGGTGACAGGGCAGAAAG
TTCTGAGGAACCAGCTTTGGAGAAACCTCCACTGGATAAAGCAGAACTGGAGAGGAGCCCGAGT
TCTCAGGACACAGAGCAAAGGCATCACCCCTACTCGGAACATGTGGGCGGAGACACCCTGGTTC
TGGATCCTAACTACTCTCAAAGCGACTTGGGAGGAAGAGCGGATGCACACCTGGAGAGCAGCTC
TGCAGCCCCCACAGAGGGGGCAGGTGAGGGAGGTGAAGCAGGTGCACACCTGGAGAGCAGCTGT
GCAGCCCTCCCAGTGGGAGCAGATGAGGGAGGAAGAGCGAATGCACACCTGGAGAGCAGCTCTG
CAGCCCCCACAGAGGGGGCAGGTGAGGGAGGTGAAGCAGATGTACACCTAGAAAGCAGCTCTGC
AGTCCCCCCAGAGGAGGCCCATCTGGAGAGCAGCTCTGCAGCCCCCTCAGAGGGGGCAGGTGAG
GGAGGTGAAGCAGATGCACACCTGGAGAGCAGCTCTGCAGCCCCTTCAGAGGGGGCAGGTGAGG
GAGGTGAAACTGCTCAGAACCTACTTGCTGTAGACTCTACCGATGCCCAGAGTCCCTGTCACTC
CAGTGCAGGCCCAGGGAGCCAGGATTCACTGAGGAGAAGACTGCCTGTGACAGAGGCTGAAAGG
CATGAAGAAGAGACACAGTTGGTGACGGAAAAGGAGGAGGTCGCACAGGAAACATTGAGAAAGA
CTGAGAAAAAGAGTCTCTGGACCTATGGTTCCATGTTTCTTGGCTGCCTGATTGTGGCTGTGGT
GCTAAGCTCTGTCAACAGCTACTATTCCTCCCCAGCTCAGCAGGTGCCACAGAACCCAGCTCTG
GAGGCCTTCCTGGCTCAGTTTAGCCAACTGAGGGAGAAATTTCCAGGTCAGAGTGCCTTCCTGT
GGCAGCGAGGGCGTAAGTTTCTCCAGAAGCACCTCAACGCCTCAAACCCCAGTGAGCCAGCCAC
CGTCATCTTCACAGCTGCTCGAGAGGGGAAGGAGACCCTCAAGTGCCTGAGCTACCACGTGGCC
AATGCCTACACCTCTTCCCAGAAGGTAACTGCCGTCTCCATAGACGGAGCGGAGAGAGCCCTGC
AGGACAGTGACACAGTCAAGCTGTTGGTTGACTTGGAGCTCAGCTATGGGTTTGAGAATGGCCA
CAAGGCTGCTGTAGTCCACCACTTCGAATCCCTTCCTGCGGGCTCCACCCTGATCTTCTACAAG
TACTGTGACCACGAGAACGCCGCCTTTAAAGATGTGGCCCTTGTCCTGACCGTCCTGCTGGAGG
AGGAAACGTTAGAAGCAAGTGTAAGCCCCAGGGAAACAGAAGAAAAAGTGAGGGATTTGCTCTG
GGCCAAGTTCACCGACTCCGGAACTCCCAGCTCCTTCAGCCACATGGACTCAGACAAACTGAGT
GGACTCTGGAGCCGTATCTCCCACCTCGTGCTGCCCGTGCAGCCCGTCAAGAACATAGAAGAGC
GAGGCTGCCTTTTGTGAAGCCAGCCACCAAGGTGACATTGAAGGGCCAGGCCTGAGGGCTCTGT
TGCAATGGGAGGAGGTGATTGGCACGTGAGAGGAAACAGCTGGTGCACGAGACTTTATGTTGGA
AAAGAAGCCTTTTTTTCCTTTTACTTTTATAAAAACTTTCTAGTCTGAACTTTGATAAAACTAA
CAATTGGCCTGATGTTTTTCTTTGTCTTTTAAAGCCAATCAGGTTGATGTATGTATGGATCGTT
TAGGTGTCCAGCCCATTGGTAGAATCGTTGCACAGGAAGTTCTGATTCTCCGGGAACTGCACTA
CCACTGCTGTCCTGCAAGGACTCTAACCGGCCACCAGGGCCATGTTTGGACCTGGACTAGGCGT
AATTCCAATGATTTTAGAGGACACTTCTACCACATCTTAAGTTCTTTCTAAGATTCACTTTAAT
AATGCACTCGTGGGGTTGGTTGTATCTTACACAGATTTGCACTTTGACTAGGTGAAAACAGGAA
ATTACAGTTCAGCCCCCCCCAGACCTACCTAAGAACCTGGTGTGTGTATGCTTTTATTCCGTTA
AGGAGCTGAGGTAGGAACAGCTGCTCTCAAACGAACAAACAAAAATGTTCCCAAGCATCAATGT
AGAAATTGTTAGTAATCACCAGAAATAAAAAAATCCCAACTGGCGATATCATTTCTCTGTGCCT
ACCCGCGGCCCCTCCTCCCTATGAGAGCATGCCTGCCCTTGGCTGCTGCTGGTATTTTGGCTTC
TCTGTTAAGATTTCGGTGGAACTGAGTTTCACCGAAAGGAAGTTTAAAAACCCTTGATGAAGTG
AAAGCACATTCTAGAATAGGAAGTTGGATAGGAAGAAATGGCAGGGTTAGGAGTTGACCAGGGT
TACAAAGACCTGCAGGTGAGCTAGCTACTCGAGGATGTCTGTTGGTCTTTCTGGCTTCCCCACT
GGAATTTCACATTTGTCTGTGGTAAGAGTCTGAGTGCTGTTTCAGAAAAGACTTGAGTAATAGC
AGCTGCTGCAGGAGGATGTTCTCCATAGGGGACAGGAAGAGGAATCATGGCCAGTGTCAGTTGT
TAAGCTTCGTCCCATGATTTCAGACTGGGCCAATAGCTGTTGATCAGCACATGAACTCTGAAAG
TAAAACGCTAGTAAAATGATCTTGACCCTCATCCATTACATGGGTGGGGAAAAAGCCCTTGGAA
CTTGGCACTCAGTTTTGGGTCATCTGCTGCTATGAGATCATGTATGTAGTTGAGACATTAAGCC
ACAGAGTCTAGAGGGATTTTAGGAAACACTAAGATTTCTATTGATAGTTAAAAGGATCACAGAG
GCCCTCGTGAGAGGTAATCTGAAAATATTTACCATAAAATGGCTTTGGCCAGAGCCTTTGGTGT
TAAGTAAGTTAATTATGGGGGCCCAGGTGAAGCAGTACGCATTTGGAATTTTGAAGGTATCCTG
AAATAGACGTAAGAAAAAACCCTACACAAAATTTAAGCATGGTGAATGGGGTTTTACTGTTAAA
CCAGTGTAAAACACAGGGACTGTAGAAAAATCTGTCTGCCATATTTGATTTTTCTTTTTTCTTC
TGTATTTCTAAACTCACTTGTTTCGAATGCTAGTGGCTTGTCATAGAGCCATGCTGGCCTGGTG
CTTACCCTGTGGTGTAGGCTGACTTTGAACTTACAGTGATTTTTCCTACCTCGGCTTCCTGAGT
GCTGAGGCTATAGGTGTGTACCGTTGTACTCAGCTCTTAGCTACTAACATTACATCACGTAAAG
CCACGTCAGAAGGCGCCTTGCAGAGCTGCTGTGTTGGCCTTTGACCTGTGCTCCAGAGGAACTG
TGGAGAGGACGCTAGAGGAACTGGTCAGCAGTATTTGTATACAGTCTGTGTCAGGGACTCAGGT
CACAGGTGAACTAGGTAATCATTTCTTCATTAAAACTGTAAAACTACAGCCTTACAAAGTTTGC
TGTTAACAAAAATTCAGGATATAATACATTCTAGAAATTTATTTTCATCTTTTTCCTATTTACC
TTGTTAAAAAACACTTTTCCTCATACGTGCAATCAACTGAGACTCATCAGTTTTCTACACTGTT
TCAAATCCTCCGGCCTTAACATTCATTCAAGGAGAGTGCCCTATCACTAAGCTGTATTCCCAGA
CCTTTAAAAAATAATTTTGAAAAAAACCCCAAAAAACAGTATATGTTTGTTTGGGGTCAGAACA
AATGATTTTCTGTTTTTGATACAGAGTCTGTACATAGCCCAAAGTAGTAATTCTCAAGCCTTAG
ACTTTTACATAATGAGATTCTAGGAGTGTGCCGCCATACCAGCTCAGTGCAGTTACTTTTAAAA
CAAAAATATACTTTAAAATGTATACATATCTATTTTCAACTGAACACACACACACACACACACA
CACATACATACATAACACACACACACATACACATTGGTGGTGTTTTTGTTTTTTTGTTTTGTTT
TGTTTTAAATAGGAATCCCTTCTTGAGTAATACCAAGTCTCTGAAACAAGCAGGGGAAATAGAA
ACTGTCTTTAGACTTGAGTCTCGCTTTCCCTTTCAGGTAAAATTTAGGGTTCTTAGGGTTCTTT
TAGGTAGTTCTCAGAGATCATCAGAGAAGTTCTAGAGAGTTCTTATCCCTGAACTAATTTGAAC
AAATTTTATCTGGAAGTTCGGAGGCTTGGGGGAGGGTAGTGAGGATCAGTGCCCTTCCTGTCGG
CCCACCCTAACAGTGCTGGCTGATGGAGGGGACAGCTTTGTCTCAAGGCCTTTGGTTCACATTC
TCGTTTAAGGCCGGAGCACTGTGAGCACAGATGCTGGGTATGGCAGACAGATGTGAACACGAGA
GAAATGCAGCAAAACGATGACCAGCAACACGCTTACATTCTCTATCAAGGATTTCTTAGCCCCA
AGAATCCTGCCTTGATGTATTCACAAATTTAACGGCTTGTCAGACTTTTCAAGTCACCATAACT
GCTTTTTTGCATTTGTTTCCATATTGATGATGTTGAATGTGCCTTATTCAAATCAACTGTCATT
TACAATAAATTGCCTTGATTTTTCCTAGTTGCTTGATTTTTGACTAAAATTTCCAAAATAAAGA
GTTTATGGAAA

hide sequence

RefSeq Acc Id:

XM_006250045 ⟹ XP_006250107

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	70,775,483 - 70,806,790 (+)	NCBI
mRatBN7.2	13	68,225,233 - 68,256,532 (+)	NCBI
Rnor_6.0	13	73,704,088 - 73,735,338 (+)	NCBI
Rnor_5.0	13	78,629,216 - 78,660,388 (+)	NCBI

Sequence:

show sequence

CTCCAGACGAGTAGACCTCCGCGTCTTCATCTCCTCGGCTTCCTGGGGTCCCCGCTGCCTCCGT
TGTCGAGACCGAAGATTCCACTGTCGATATCCCTTGCTTCTTGCTTCCATGGGAAGCATGAGTC
TATTGGAACTTGGGACAAGAAGAAATCAAGGTATCTCTACTACAGAGCCCAGACACTAAACACA
TGTCCCAAACTCTGAAGAGCCAGGACACAAACATGAGTGACAGTGGCTACAGGGATCCTGTGGA
AGACTCTCAAAACGTTTTGGGAAATGATCCATCAGTAAACTCTCAAGCACAGGACCCCATAGTC
ACACCGAGTAACACTGTGGAAGCCCAGACCCTACATCCCACATCTGATCTTAAGGAAGACCATC
ATGAAATAGGGGCCAAAGGTCAGGAGCATGCAGACACAGGTGACAGGGCAGAAAGTTCTGAGGA
ACCAGCTTTGGAGAAACCTCCACTGGATAAAGCAGAACTGGAGAGGAGCCCGAGTTCTCAGGAC
ACAGAGCAAAGGCATCACCCCTACTCGGAACATGTGGGCGGAGACACCCTGGTTCTGGATCCTA
ACTACTCTCAAAGCGACTTGGGAGGAAGAGCGGATGCACACCTGGAGAGCAGCTCTGCAGCCCC
CACAGAGGGGGCAGGTGAGGGAGGTGAAGCAGGTGCACACCTGGAGAGCAGCTGTGCAGCCCTC
CCAGTGGGAGCAGATGAGGGAGGAAGAGCGAATGCACACCTGGAGAGCAGCTCTGCAGCCCCCA
CAGAGGGGGCAGGTGAGGGAGGTGAAGCAGATGTACACCTAGAAAGCAGCTCTGCAGTCCCCCC
AGAGGAGGCCCATCTGGAGAGCAGCTCTGCAGCCCCCTCAGAGGGGGCAGGTGAGGGAGGTGAA
GCAGATGCACACCTGGAGAGCAGCTCTGCAGCCCCTTCAGAGGGGGCAGGTGAGGGAGGTGAAA
CTGCTCAGAACCTACTTGCTGTAGACTCTACCGATGCCCAGAGTCCCTGTCACTCCAGTGCAGG
CCCAGGGAGCCAGGATTCACTGAGGAGAAGACTGCCTGTGACAGAGGCTGAAAGGCATGAAGAA
GAGACACAGTTGGTGACGGAAAAGGAGGAGGTCGCACAGGAAACATTGAGAAAGACTGAGAAAA
AGAGTCTCTGGACCTATGGTTCCATGTTTCTTGGCTGCCTGATTGTGGCTGTGGTGCTAAGCTC
TGTCAACAGCTACTATTCCTCCCCAGCTCAGCAGGTGCCACAGAACCCAGCTCTGGAGGCCTTC
CTGGCTCAGTTTAGCCAACTGAGGGAGAAATTTCCAGGTCAGAGTGCCTTCCTGTGGCAGCGAG
GGCGTAAGTTTCTCCAGAAGCACCTCAACGCCTCAAACCCCAGTGAGCCAGCCACCGTCATCTT
CACAGCTGCTCGAGAGGGGAAGGAGACCCTCAAGTGCCTGAGCTACCACGTGGCCAATGCCTAC
ACCTCTTCCCAGAAGGTAACTGCCGTCTCCATAGACGGAGCGGAGAGAGCCCTGCAGGACAGTG
ACACAGTCAAGCTGTTGGTTGACTTGGAGCTCAGCTATGGGTTTGAGAATGGCCACAAGGCTGC
TGTAGTCCACCACTTCGAATCCCTTCCTGCGGGCTCCACCCTGATCTTCTACAAGTACTGTGAC
CACGAGAACGCCGCCTTTAAAGATGTGGCCCTTGTCCTGACCGTCCTGCTGGAGGAGGAAACGT
TAGAAGCAAGTGTAAGCCCCAGGGAAACAGAAGAAAAAGTGAGGGATTTGCTCTGGGCCAAGTT
CACCGACTCCGGAACTCCCAGCTCCTTCAGCCACATGGACTCAGACAAACTGAGTGGACTCTGG
AGCCGTATCTCCCACCTCGTGCTGCCCGTGCAGCCCGTCAAGAACATAGAAGAGCGAGGCTGCC
TTTTGTGAAGCCAGCCACCAAGGTGACATTGAAGGGCCAGGCCTGAGGGCTCTGTTGCAATGGG
AGGAGGTGATTGGCACGTGAGAGGAAACAGCTGGTGCACGAGACTTTATGTTGGAAAAGAAGCC
TTTTTTTCCTTTTACTTTTATAAAAACTTTCTAGTCTGAACTTTGATAAAACTAACAATTGGCC
TGATGTTTTTCTTTGTCTTTTAAAGCCAATCAGGTTGATGTATGTATGGATCGTTTAGGTGTCC
AGCCCATTGGTAGAATCGTTGCACAGGAAGTTCTGATTCTCCGGGAACTGCACTACCACTGCTG
TCCTGCAAGGACTCTAACCGGCCACCAGGGCCATGTTTGGACCTGGACTAGGCGTAATTCCAAT
GATTTTAGAGGACACTTCTACCACATCTTAAGTTCTTTCTAAGATTCACTTTAATAATGCACTC
GTGGGGTTGGTTGTATCTTACACAGATTTGCACTTTGACTAGGTGAAAACAGGAAATTACAGTT
CAGCCCCCCCCAGACCTACCTAAGAACCTGGTGTGTGTATGCTTTTATTCCGTTAAGGAGCTGA
GGTAGGAACAGCTGCTCTCAAACGAACAAACAAAAATGTTCCCAAGCATCAATGTAGAAATTGT
TAGTAATCACCAGAAATAAAAAAATCCCAACTGGCGATATCATTTCTCTGTGCCTACCCGCGGC
CCCTCCTCCCTATGAGAGCATGCCTGCCCTTGGCTGCTGCTGGTATTTTGGCTTCTCTGTTAAG
ATTTCGGTGGAACTGAGTTTCACCGAAAGGAAGTTTAAAAACCCTTGATGAAGTGAAAGCACAT
TCTAGAATAGGAAGTTGGATAGGAAGAAATGGCAGGGTTAGGAGTTGACCAGGGTTACAAAGAC
CTGCAGGTGAGCTAGCTACTCGAGGATGTCTGTTGGTCTTTCTGGCTTCCCCACTGGAATTTCA
CATTTGTCTGTGGTAAGAGTCTGAGTGCTGTTTCAGAAAAGACTTGAGTAATAGCAGCTGCTGC
AGGAGGATGTTCTCCATAGGGGACAGGAAGAGGAATCATGGCCAGTGTCAGTTGTTAAGCTTCG
TCCCATGATTTCAGACTGGGCCAATAGCTGTTGATCAGCACATGAACTCTGAAAGTAAAACGCT
AGTAAAATGATCTTGACCCTCATCCATTACATGGGTGGGGAAAAAGCCCTTGGAACTTGGCACT
CAGTTTTGGGTCATCTGCTGCTATGAGATCATGTATGTAGTTGAGACATTAAGCCACAGAGTCT
AGAGGGATTTTAGGAAACACTAAGATTTCTATTGATAGTTAAAAGGATCACAGAGGCCCTCGTG
AGAGGTAATCTGAAAATATTTACCATAAAATGGCTTTGGCCAGAGCCTTTGGTGTTAAGTAAGT
TAATTATGGGGGCCCAGGTGAAGCAGTACGCATTTGGAATTTTGAAGGTATCCTGAAATAGACG
TAAGAAAAAACCCTACACAAAATTTAAGCATGGTGAATGGGGTTTTACTGTTAAACCAGTGTAA
AACACAGGGACTGTAGAAAAATCTGTCTGCCATATTTGATTTTTCTTTTTTCTTCTGTATTTCT
AAACTCACTTGTTTCGAATGCTAGTGGCTTGTCATAGAGCCATGCTGGCCTGGTGCTTACCCTG
TGGTGTAGGCTGACTTTGAACTTACAGTGATTTTTCCTACCTCGGCTTCCTGAGTGCTGAGGCT
ATAGGTGTGTACCGTTGTACTCAGCTCTTAGCTACTAACATTACATCACGTAAAGCCACGTCAG
AAGGCGCCTTGCAGAGCTGCTGTGTTGGCCTTTGACCTGTGCTCCAGAGGAACTGTGGAGAGGA
CGCTAGAGGAACTGGTCAGCAGTATTTGTATACAGTCTGTGTCAGGGACTCAGGTCACAGGTGA
ACTAGGTAATCATTTCTTCATTAAAACTGTAAAACTACAGCCTTACAAAGTTTGCTGTTAACAA
AAATTCAGGATATAATACATTCTAGAAATTTATTTTCATCTTTTTCCTATTTACCTTGTTAAAA
AACACTTTTCCTCATACGTGCAATCAACTGAGACTCATCAGTTTTCTACACTGTTTCAAATCCT
CCGGCCTTAACATTCATTCAAGGAGAGTGCCCTATCACTAAGCTGTATTCCCAGACCTTTAAAA
AATAATTTTGAAAAAAACCCCAAAAAACAGTATATGTTTGTTTGGGGTCAGAACAAATGATTTT
CTGTTTTTGATACAGAGTCTGTACATAGCCCAAAGTAGTAATTCTCAAGCCTTAGACTTTTACA
TAATGAGATTCTAGGAGTGTGCCGCCATACCAGCTCAGTGCAGTTACTTTTAAAACAAAAATAT
ACTTTAAAATGTATACATATCTATTTTCAACTGAACACACACACACACACACACACACATACAT
ACATAACACACACACACATACACATTGGTGGTGTTTTTGTTTTTTTGTTTTGTTTTGTTTTAAA
TAGGAATCCCTTCTTGAGTAATACCAAGTCTCTGAAACAAGCAGGGGAAATAGAAACTGTCTTT
AGACTTGAGTCTCGCTTTCCCTTTCAGGTAAAATTTAGGGTTCTTAGGGTTCTTTTAGGTAGTT
CTCAGAGATCATCAGAGAAGTTCTAGAGAGTTCTTATCCCTGAACTAATTTGAACAAATTTTAT
CTGGAAGTTCGGAGGCTTGGGGGAGGGTAGTGAGGATCAGTGCCCTTCCTGTCGGCCCACCCTA
ACAGTGCTGGCTGATGGAGGGGACAGCTTTGTCTCAAGGCCTTTGGTTCACATTCTCGTTTAAG
GCCGGAGCACTGTGAGCACAGATGCTGGGTATGGCAGACAGATGTGAACACGAGAGAAATGCAG
CAAAACGATGACCAGCAACACGCTTACATTCTCTATCAAGGATTTCTTAGCCCCAAGAATCCTG
CCTTGATGTATTCACAAATTTAACGGCTTGTCAGACTTTTCAAGTCACCATAACTGCTTTTTTG
CATTTGTTTCCATATTGATGATGTTGAATGTGCCTTATTCAAATCAACTGTCATTTACAATAAA
TTGCCTTGATTTTTCCTAGTTGCTTGATTTTTGACTAAAATTTCCAAAATAAAGAGTTTATGGA
AATGG

hide sequence

RefSeq Acc Id:

XM_039090735 ⟹ XP_038946663

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	70,780,287 - 70,806,790 (+)	NCBI
mRatBN7.2	13	68,230,027 - 68,256,532 (+)	NCBI

RefSeq Acc Id:

XM_039090736 ⟹ XP_038946664

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	70,775,486 - 70,806,790 (+)	NCBI
mRatBN7.2	13	68,225,226 - 68,256,532 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001159368	(Get FASTA)	NCBI Sequence Viewer
	NP_001159369	(Get FASTA)	NCBI Sequence Viewer
	NP_954531	(Get FASTA)	NCBI Sequence Viewer
	XP_006250105	(Get FASTA)	NCBI Sequence Viewer
	XP_006250107	(Get FASTA)	NCBI Sequence Viewer
	XP_038946663	(Get FASTA)	NCBI Sequence Viewer
	XP_038946664	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH61831	(Get FASTA)	NCBI Sequence Viewer
	EDM09496	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000039176
	ENSRNOP00000039176.3
	ENSRNOP00000071656
	ENSRNOP00000084434
GenBank Protein	Q6P752	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_954531 ⟸ NM_199100
- Peptide Label:	isoform b
- UniProtKB:	Q6P752 (UniProtKB/Swiss-Prot), A0A8I6AJQ9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSQTLKSQDTNMSDSGYRDPVEDSQNVLGNDPSVNSQAQDPIVTPSNTVEAQTLHPTSDLKEDH HEIGAKGQEHADTGDRAESSEEPALEKPPLDKAELERSPSSQDTEQRHHPYSEHVGGDTLVLDP NYSQSDLGGRADAHLESSSAAPTEGAGEGGEAGAHLESSCAALPVGADEGGRANAHLESSSAAP TEGAGEGGEADVHLESSSAVPPEEAHLESSSAAPSEGAGEGGEADAHLESSSAAPSEGAGEGGE TAQNLLAVDSTDAQSPCHSSAGPGSQDSLRRRLPVTEAERHEEETQLVTEKEEVAQETLRKTEK KSLWTYGSMFLGCLIVAVVLSSVNSYYSSPAQQVPQNPALEAFLAQFSQLREKFPGQSAFLWQR GRKFLQKHLNASNPSEPATVIFTAAREGKETLKCLSYHVANAYTSSQKVTAVSIDGAERALQDS DTVKLLVDLELSYGFENGHKAAVVHHFESLPAGSTLIFYKYCDHENAAFKDVALVLTVLLEEET LEASVSPRETEEKVRDLLWAKFTDSGTPSSFSHMDSDKLSGLWSRISHLVLPVQPVKNIEERGC LL hide sequence

RefSeq Acc Id:	NP_001159368 ⟸ NM_001165896
- Peptide Label:	isoform a
- UniProtKB:	M0R5U6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFSDNSHCPDCGQQWFPSLELGHWLYQTELVENECYQVFLDRINRADYCPECYPDNPANRSLVL PWSFPLEWAPQNLTRWTFEKACHPFLLGPPLVRKKIHDSRVAGFNPALQLILSRTDKTLNKKLG QSK hide sequence

RefSeq Acc Id:	NP_001159369 ⟸ NM_001165897
- Peptide Label:	isoform a
- UniProtKB:	M0R5U6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFSDNSHCPDCGQQWFPSLELGHWLYQTELVENECYQVFLDRINRADYCPECYPDNPANRSLVL PWSFPLEWAPQNLTRWTFEKACHPFLLGPPLVRKKIHDSRVAGFNPALQLILSRTDKTLNKKLG QSK hide sequence

RefSeq Acc Id:	XP_006250107 ⟸ XM_006250045
- Peptide Label:	isoform X1
- UniProtKB:	Q6P752 (UniProtKB/Swiss-Prot), A0A8I6AJQ9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSQTLKSQDTNMSDSGYRDPVEDSQNVLGNDPSVNSQAQDPIVTPSNTVEAQTLHPTSDLKEDH HEIGAKGQEHADTGDRAESSEEPALEKPPLDKAELERSPSSQDTEQRHHPYSEHVGGDTLVLDP NYSQSDLGGRADAHLESSSAAPTEGAGEGGEAGAHLESSCAALPVGADEGGRANAHLESSSAAP TEGAGEGGEADVHLESSSAVPPEEAHLESSSAAPSEGAGEGGEADAHLESSSAAPSEGAGEGGE TAQNLLAVDSTDAQSPCHSSAGPGSQDSLRRRLPVTEAERHEEETQLVTEKEEVAQETLRKTEK KSLWTYGSMFLGCLIVAVVLSSVNSYYSSPAQQVPQNPALEAFLAQFSQLREKFPGQSAFLWQR GRKFLQKHLNASNPSEPATVIFTAAREGKETLKCLSYHVANAYTSSQKVTAVSIDGAERALQDS DTVKLLVDLELSYGFENGHKAAVVHHFESLPAGSTLIFYKYCDHENAAFKDVALVLTVLLEEET LEASVSPRETEEKVRDLLWAKFTDSGTPSSFSHMDSDKLSGLWSRISHLVLPVQPVKNIEERGC LL hide sequence

RefSeq Acc Id:	XP_006250105 ⟸ XM_006250043
- Peptide Label:	isoform X1
- UniProtKB:	Q6P752 (UniProtKB/Swiss-Prot), A0A8I6AJQ9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSQTLKSQDTNMSDSGYRDPVEDSQNVLGNDPSVNSQAQDPIVTPSNTVEAQTLHPTSDLKEDH HEIGAKGQEHADTGDRAESSEEPALEKPPLDKAELERSPSSQDTEQRHHPYSEHVGGDTLVLDP NYSQSDLGGRADAHLESSSAAPTEGAGEGGEAGAHLESSCAALPVGADEGGRANAHLESSSAAP TEGAGEGGEADVHLESSSAVPPEEAHLESSSAAPSEGAGEGGEADAHLESSSAAPSEGAGEGGE TAQNLLAVDSTDAQSPCHSSAGPGSQDSLRRRLPVTEAERHEEETQLVTEKEEVAQETLRKTEK KSLWTYGSMFLGCLIVAVVLSSVNSYYSSPAQQVPQNPALEAFLAQFSQLREKFPGQSAFLWQR GRKFLQKHLNASNPSEPATVIFTAAREGKETLKCLSYHVANAYTSSQKVTAVSIDGAERALQDS DTVKLLVDLELSYGFENGHKAAVVHHFESLPAGSTLIFYKYCDHENAAFKDVALVLTVLLEEET LEASVSPRETEEKVRDLLWAKFTDSGTPSSFSHMDSDKLSGLWSRISHLVLPVQPVKNIEERGC LL hide sequence

Ensembl Acc Id:

ENSRNOP00000071656 ⟸ ENSRNOT00000077874

Ensembl Acc Id:

ENSRNOP00000064775 ⟸ ENSRNOT00000071482

Ensembl Acc Id:

ENSRNOP00000039176 ⟸ ENSRNOT00000050734

RefSeq Acc Id:	XP_038946664 ⟸ XM_039090736
- Peptide Label:	isoform X1
- UniProtKB:	Q6P752 (UniProtKB/Swiss-Prot), A0A8I6AJQ9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038946663 ⟸ XM_039090735
- Peptide Label:	isoform X1
- UniProtKB:	Q6P752 (UniProtKB/Swiss-Prot), A0A8I6AJQ9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000094778 ⟸ ENSRNOT00000112812

Ensembl Acc Id:

ENSRNOP00000093148 ⟸ ENSRNOT00000113054

Ensembl Acc Id:

ENSRNOP00000084434 ⟸ ENSRNOT00000104928

Ensembl Acc Id:

ENSRNOP00000106683 ⟸ ENSRNOT00000148385

Protein Domains

Torsin-1A-interacting protein 1/2 AAA+ activator Torsin-1A-interacting protein 1/2 N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6P752-F1-model_v2	AlphaFold	Q6P752	1-578	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698913

Promoter ID:

EPDNEW_R9438

Type:

initiation region

Name:

Tor1aip2_1

Description:

torsin 1A interacting protein 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	73,708,827 - 73,708,887	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:735059	AgrOrtholog
BioCyc Gene	G2FUF-17822	BioCyc
Ensembl Genes	ENSRNOG00000024849	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOG00000048267	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000050734	ENTREZGENE
	ENSRNOT00000050734.5	UniProtKB/Swiss-Prot
	ENSRNOT00000077874	ENTREZGENE
	ENSRNOT00000104928	ENTREZGENE
Gene3D-CATH	3.40.50.12190	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:5599615	IMAGE-MGC_LOAD
InterPro	Lamina-ass_polypeptide_CLAP1C	UniProtKB/Swiss-Prot
	LAP1C-like_C_sf	UniProtKB/Swiss-Prot
	TOIP1/2_C	UniProtKB/Swiss-Prot
	TOIP1/2_N	UniProtKB/Swiss-Prot
KEGG Report	rno:304881	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:72610	IMAGE-MGC_LOAD
NCBI Gene	304881	ENTREZGENE
PANTHER	PTHR18843	UniProtKB/Swiss-Prot
	TORSIN-1A-INTERACTING PROTEIN 2	UniProtKB/Swiss-Prot
Pfam	LAP1_N	UniProtKB/Swiss-Prot
	LAP1C	UniProtKB/Swiss-Prot
PhenoGen	Tor1aip2	PhenoGen
RatGTEx	ENSRNOG00000024849	RatGTEx
	ENSRNOG00000048267	RatGTEx
UniProt	A0A8I6AJQ9	ENTREZGENE
	A0A8I6B1H8_RAT	UniProtKB/TrEMBL
	A6ID01_RAT	UniProtKB/TrEMBL
	M0R5U6	ENTREZGENE, UniProtKB/TrEMBL
	Q6P752	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-03	Tor1aip2	torsin 1A interacting protein 2	Tor1aip2	torsin A interacting protein 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Tor1aip2	torsin A interacting protein 2	MGC72610	Unknown (protein for MGC:72610)	Symbol and Name updated	1299863	APPROVED
2005-09-30	MGC72610				Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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