Rcbtb2 (RCC1 and BTB domain containing protein 2) - Rat Genome Database

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Gene: Rcbtb2 (RCC1 and BTB domain containing protein 2) Rattus norvegicus
Analyze
Symbol: Rcbtb2
Name: RCC1 and BTB domain containing protein 2
RGD ID: 735048
Description: Predicted to act upstream of or within several processes, including digestive tract development; hematopoietic or lymphoid organ development; and liver development. Predicted to be located in acrosomal vesicle. Predicted to be active in cytoplasm. Orthologous to human RCBTB2 (RCC1 and BTB domain containing protein 2); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Chc1l; chromosome condensation 1-like; MGC72635; RCC1 and BTB domain-containing protein 2; regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2; regulator of chromosome condensation and BTB domain-containing protein 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81554,729,367 - 54,774,004 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1554,729,332 - 54,793,313 (+)EnsemblGRCr8
mRatBN7.21548,319,809 - 48,364,441 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1548,323,866 - 48,383,750 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1552,465,101 - 52,503,610 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01553,576,675 - 53,615,184 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01550,415,613 - 50,454,003 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01555,029,388 - 55,074,728 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1555,034,033 - 55,073,437 (+)Ensemblrn6Rnor6.0
Rnor_5.01558,766,754 - 58,796,468 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41553,789,994 - 53,819,842 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1547,973,955 - 48,012,565 (+)NCBICelera
RGSC_v3.11553,805,773 - 53,835,615 (+)NCBI
Cytogenetic Map15q11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-fluorouracil  (ISO)
acetamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
choline  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dextran sulfate  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
endosulfan  (EXP)
ethyl methanesulfonate  (ISO)
fenvalerate  (EXP)
ferric oxide  (ISO)
finasteride  (EXP)
fipronil  (EXP)
folic acid  (ISO)
fulvestrant  (ISO)
gardiquimod  (ISO)
glafenine  (EXP)
GSK-J4  (ISO)
indometacin  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
motexafin gadolinium  (ISO)
N-nitrosodiethylamine  (EXP)
nickel atom  (ISO)
paracetamol  (EXP,ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
protein kinase inhibitor  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
valproic acid  (ISO)
zinc acetate  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. cDNA cloning, gene characterization and 13q14.3 chromosomal assignment of CHC1-L, a chromosome condensation regulator-like guanine nucleotide exchange factor. Devilder MC, etal., Genomics 1998 Nov 15;54(1):99-106.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334   PMID:22768142  


Genomics

Comparative Map Data
Rcbtb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81554,729,367 - 54,774,004 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1554,729,332 - 54,793,313 (+)EnsemblGRCr8
mRatBN7.21548,319,809 - 48,364,441 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1548,323,866 - 48,383,750 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1552,465,101 - 52,503,610 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01553,576,675 - 53,615,184 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01550,415,613 - 50,454,003 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01555,029,388 - 55,074,728 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1555,034,033 - 55,073,437 (+)Ensemblrn6Rnor6.0
Rnor_5.01558,766,754 - 58,796,468 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41553,789,994 - 53,819,842 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1547,973,955 - 48,012,565 (+)NCBICelera
RGSC_v3.11553,805,773 - 53,835,615 (+)NCBI
Cytogenetic Map15q11NCBI
RCBTB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381348,488,963 - 48,535,895 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1348,488,959 - 48,536,006 (-)Ensemblhg38GRCh38
GRCh371349,063,099 - 49,110,031 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361347,961,100 - 48,005,317 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341347,961,101 - 48,005,317NCBI
Celera1330,117,817 - 30,162,082 (-)NCBICelera
Cytogenetic Map13q14.2NCBI
HuRef1329,855,188 - 29,900,668 (-)NCBIHuRef
CHM1_11349,030,673 - 49,074,870 (-)NCBICHM1_1
T2T-CHM13v2.01347,709,252 - 47,756,180 (-)NCBIT2T-CHM13v2.0
Rcbtb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391473,376,185 - 73,421,495 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1473,360,477 - 73,445,283 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381473,138,745 - 73,184,055 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1473,123,037 - 73,207,843 (+)Ensemblmm10GRCm38
MGSCv371473,542,317 - 73,583,862 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361471,876,343 - 71,917,843 (+)NCBIMGSCv36mm8
Celera1470,658,883 - 70,707,684 (+)NCBICelera
Cytogenetic Map14D3NCBI
cM Map1438.66NCBI
Rcbtb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554312,129,006 - 2,162,854 (-)Ensembl
ChiLan1.0NW_0049554312,122,640 - 2,170,222 (-)NCBIChiLan1.0ChiLan1.0
RCBTB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21449,931,383 - 49,975,770 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11348,579,464 - 48,626,625 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01329,631,741 - 29,675,959 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11348,332,860 - 48,377,336 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1348,332,860 - 48,377,336 (-)EnsemblpanPan2panpan1.1
RCBTB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1223,018,628 - 3,051,059 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl223,018,137 - 3,051,269 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha223,045,832 - 3,085,508 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0223,006,418 - 3,045,661 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl223,017,432 - 3,046,091 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1222,915,977 - 2,955,856 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0222,978,911 - 3,018,270 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0222,984,009 - 3,023,928 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rcbtb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945158,266,515 - 158,305,582 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365651,750,105 - 1,789,737 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365651,750,565 - 1,789,779 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RCBTB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1119,106,531 - 19,182,484 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11119,081,841 - 19,182,488 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21119,541,428 - 19,644,069 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RCBTB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1326,401,787 - 26,447,315 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl326,401,786 - 26,437,619 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605717,459,866 - 17,504,471 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rcbtb2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247486,311,636 - 6,355,591 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247486,305,821 - 6,355,511 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rcbtb2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11251,222,820 - 51,243,309 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rcbtb2
442 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:18
Count of miRNA genes:17
Interacting mature miRNAs:18
Transcripts:ENSRNOT00000020836
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1544806773104695021Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)153185580392671517Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152852773273527732Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)154367724488677244Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)154367724488677244Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1525285835104695021Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1525285835104695021Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151915576287086765Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)154046315285463152Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151492659471614418Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)152233635167336351Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)154367724488677244Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1525285835104695021Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)154367724488677244Rat
7411725Strs7Sensitivity to stroke QTL 73.8cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)154446544756583797Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)154367724488677244Rat

Markers in Region
AW240694  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21548,362,833 - 48,362,930 (+)MAPPERmRatBN7.2
Rnor_6.01555,073,121 - 55,073,217NCBIRnor6.0
Rnor_5.01558,796,270 - 58,796,366UniSTSRnor5.0
RGSC_v3.41553,819,644 - 53,819,740UniSTSRGSC3.4
Celera1548,012,367 - 48,012,463UniSTS
Cytogenetic Map15p11UniSTS
RH135374  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21548,344,504 - 48,344,694 (+)MAPPERmRatBN7.2
Rnor_6.01555,054,793 - 55,054,982NCBIRnor6.0
Rnor_5.01558,777,942 - 58,778,131UniSTSRnor5.0
RGSC_v3.41553,801,294 - 53,801,483UniSTSRGSC3.4
Celera1547,994,039 - 47,994,228UniSTS
Cytogenetic Map15p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_199084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC061766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000020836   ⟹   ENSRNOP00000020836
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1554,733,907 - 54,773,998 (+)Ensembl
mRatBN7.2 Ensembl1548,324,419 - 48,363,023 (+)Ensembl
Rnor_6.0 Ensembl1555,034,033 - 55,073,312 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000091000   ⟹   ENSRNOP00000070018
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1554,729,332 - 54,793,313 (+)Ensembl
mRatBN7.2 Ensembl1548,323,866 - 48,383,750 (+)Ensembl
Rnor_6.0 Ensembl1555,043,608 - 55,073,437 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000146364   ⟹   ENSRNOP00000112735
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1554,749,917 - 54,773,998 (+)Ensembl
RefSeq Acc Id: NM_199084   ⟹   NP_954515
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81554,733,985 - 54,772,595 (+)NCBI
mRatBN7.21548,324,419 - 48,363,032 (+)NCBI
Rnor_6.01555,034,033 - 55,073,319 (+)NCBI
Rnor_5.01558,766,754 - 58,796,468 (+)NCBI
RGSC_v3.41553,789,994 - 53,819,842 (+)RGD
Celera1547,973,955 - 48,012,565 (+)RGD
Sequence:
RefSeq Acc Id: XM_008770845   ⟹   XP_008769067
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81554,729,367 - 54,774,004 (+)NCBI
mRatBN7.21548,319,809 - 48,364,441 (+)NCBI
Rnor_6.01555,029,388 - 55,074,728 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770846   ⟹   XP_008769068
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81554,733,286 - 54,774,004 (+)NCBI
mRatBN7.21548,323,802 - 48,364,441 (+)NCBI
Rnor_6.01555,033,277 - 55,074,728 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770858   ⟹   XP_008769080
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81554,729,367 - 54,774,004 (+)NCBI
mRatBN7.21548,319,809 - 48,364,441 (+)NCBI
Rnor_6.01555,029,388 - 55,074,728 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770860   ⟹   XP_008769082
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81554,733,873 - 54,774,004 (+)NCBI
mRatBN7.21548,324,317 - 48,364,441 (+)NCBI
Rnor_6.01555,034,039 - 55,074,728 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770861   ⟹   XP_008769083
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81554,733,806 - 54,774,004 (+)NCBI
mRatBN7.21548,324,236 - 48,364,441 (+)NCBI
Rnor_6.01555,034,025 - 55,074,728 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039093164   ⟹   XP_038949092
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81554,734,664 - 54,774,004 (+)NCBI
mRatBN7.21548,325,094 - 48,364,441 (+)NCBI
RefSeq Acc Id: XM_039093165   ⟹   XP_038949093
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81554,733,286 - 54,774,004 (+)NCBI
mRatBN7.21548,323,802 - 48,364,441 (+)NCBI
RefSeq Acc Id: XM_039093167   ⟹   XP_038949095
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81554,733,884 - 54,774,004 (+)NCBI
mRatBN7.21548,324,338 - 48,364,441 (+)NCBI
RefSeq Acc Id: XM_039093171   ⟹   XP_038949099
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81554,729,367 - 54,774,004 (+)NCBI
mRatBN7.21548,319,809 - 48,364,441 (+)NCBI
RefSeq Acc Id: XM_039093172   ⟹   XP_038949100
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81554,733,289 - 54,774,004 (+)NCBI
mRatBN7.21548,323,802 - 48,364,441 (+)NCBI
RefSeq Acc Id: XM_063274144   ⟹   XP_063130214
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81554,733,548 - 54,774,004 (+)NCBI
RefSeq Acc Id: XM_063274145   ⟹   XP_063130215
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81554,729,367 - 54,774,004 (+)NCBI
RefSeq Acc Id: XM_063274146   ⟹   XP_063130216
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81554,729,367 - 54,774,004 (+)NCBI
RefSeq Acc Id: XM_063274147   ⟹   XP_063130217
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81554,729,367 - 54,774,004 (+)NCBI
RefSeq Acc Id: XM_063274148   ⟹   XP_063130218
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81554,729,367 - 54,774,004 (+)NCBI
RefSeq Acc Id: XM_063274149   ⟹   XP_063130219
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81554,733,928 - 54,774,004 (+)NCBI
RefSeq Acc Id: XM_063274150   ⟹   XP_063130220
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81554,733,548 - 54,774,004 (+)NCBI
RefSeq Acc Id: NP_954515   ⟸   NM_199084
- UniProtKB: Q6P798 (UniProtKB/Swiss-Prot),   A6HTQ0 (UniProtKB/TrEMBL),   A0A8L2R3I1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008769067   ⟸   XM_008770845
- Peptide Label: isoform X1
- UniProtKB: Q6P798 (UniProtKB/Swiss-Prot),   A6HTQ0 (UniProtKB/TrEMBL),   A0A8L2R3I1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008769080   ⟸   XM_008770858
- Peptide Label: isoform X2
- UniProtKB: A0A8L2R3I1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008769068   ⟸   XM_008770846
- Peptide Label: isoform X1
- UniProtKB: Q6P798 (UniProtKB/Swiss-Prot),   A6HTQ0 (UniProtKB/TrEMBL),   A0A8L2R3I1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008769083   ⟸   XM_008770861
- Peptide Label: isoform X2
- UniProtKB: A0A8L2R3I1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008769082   ⟸   XM_008770860
- Peptide Label: isoform X2
- UniProtKB: A0A8L2R3I1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000070018   ⟸   ENSRNOT00000091000
Ensembl Acc Id: ENSRNOP00000020836   ⟸   ENSRNOT00000020836
RefSeq Acc Id: XP_038949099   ⟸   XM_039093171
- Peptide Label: isoform X2
- UniProtKB: A0A8L2R3I1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949093   ⟸   XM_039093165
- Peptide Label: isoform X1
- UniProtKB: Q6P798 (UniProtKB/Swiss-Prot),   A6HTQ0 (UniProtKB/TrEMBL),   A0A8L2R3I1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949100   ⟸   XM_039093172
- Peptide Label: isoform X2
- UniProtKB: A0A8L2R3I1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949095   ⟸   XM_039093167
- Peptide Label: isoform X1
- UniProtKB: Q6P798 (UniProtKB/Swiss-Prot),   A6HTQ0 (UniProtKB/TrEMBL),   A0A8L2R3I1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949092   ⟸   XM_039093164
- Peptide Label: isoform X1
- UniProtKB: Q6P798 (UniProtKB/Swiss-Prot),   A6HTQ0 (UniProtKB/TrEMBL),   A0A8L2R3I1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130215   ⟸   XM_063274145
- Peptide Label: isoform X1
- UniProtKB: Q6P798 (UniProtKB/Swiss-Prot),   A0A8L2R3I1 (UniProtKB/TrEMBL),   A6HTQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130216   ⟸   XM_063274146
- Peptide Label: isoform X2
- UniProtKB: A0A8L2R3I1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130217   ⟸   XM_063274147
- Peptide Label: isoform X2
- UniProtKB: A0A8L2R3I1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130218   ⟸   XM_063274148
- Peptide Label: isoform X2
- UniProtKB: A0A8L2R3I1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130220   ⟸   XM_063274150
- Peptide Label: isoform X2
- UniProtKB: A0A8L2R3I1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130214   ⟸   XM_063274144
- Peptide Label: isoform X1
- UniProtKB: Q6P798 (UniProtKB/Swiss-Prot),   A0A8L2R3I1 (UniProtKB/TrEMBL),   A6HTQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130219   ⟸   XM_063274149
- Peptide Label: isoform X2
- UniProtKB: A0A8L2R3I1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000112735   ⟸   ENSRNOT00000146364
Protein Domains
BTB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6P798-F1-model_v2 AlphaFold Q6P798 1-551 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699821
Promoter ID:EPDNEW_R10345
Type:initiation region
Name:Rcbtb2_1
Description:RCC1 and BTB domain containing protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01555,034,022 - 55,034,082EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:735048 AgrOrtholog
BioCyc Gene G2FUF-13169 BioCyc
Ensembl Genes ENSRNOG00000015054 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000020836 ENTREZGENE
  ENSRNOT00000020836.7 UniProtKB/Swiss-Prot
  ENSRNOT00000091000 ENTREZGENE
  ENSRNOT00000146364 ENTREZGENE
Gene3D-CATH 1.25.40.420 UniProtKB/Swiss-Prot
  2.130.10.30 UniProtKB/Swiss-Prot
  Potassium Channel Kv1.1, Chain A UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:5621190 IMAGE-MGC_LOAD
InterPro BTB/POZ_dom UniProtKB/Swiss-Prot
  RCC1/BLIP-II UniProtKB/Swiss-Prot
  Reg_chr_condens UniProtKB/Swiss-Prot
  Signaling_Regulatory_Domain UniProtKB/Swiss-Prot
  SKP1/BTB/POZ_sf UniProtKB/Swiss-Prot
KEGG Report rno:290363 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72635 IMAGE-MGC_LOAD
NCBI Gene 290363 ENTREZGENE
PANTHER BTK-BINDING PROTEIN-RELATED UniProtKB/Swiss-Prot
  RCC1 AND BTB DOMAIN CONTAINING PROTEIN 2 UniProtKB/Swiss-Prot
Pfam BTB UniProtKB/Swiss-Prot
  WD40_RLD UniProtKB/Swiss-Prot
PhenoGen Rcbtb2 PhenoGen
PRINTS RCCNDNSATION UniProtKB/Swiss-Prot
PROSITE BTB UniProtKB/Swiss-Prot
  RCC1_2 UniProtKB/Swiss-Prot
  RCC1_3 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000015054 RatGTEx
SMART BTB UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50985 UniProtKB/Swiss-Prot
  SSF54695 UniProtKB/Swiss-Prot
UniProt A0A8L2R3I1 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0M8Y1_RAT UniProtKB/TrEMBL
  A6HTQ0 ENTREZGENE, UniProtKB/TrEMBL
  A6HTQ1_RAT UniProtKB/TrEMBL
  A6HTQ2_RAT UniProtKB/TrEMBL
  Q6P798 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-17 Rcbtb2  RCC1 and BTB domain containing protein 2  Rcbtb2  regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Rcbtb2  regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2  Chc1l  chromosome condensation 1-like  Symbol and Name updated 1299863 APPROVED