Advanced Search (OLGA)

Gene: Igsf10 (immunoglobulin superfamily, member 10) Rattus norvegicus

Analyze

Symbol:

Igsf10

Name:

immunoglobulin superfamily, member 10

RGD ID:

735030

Description:

Involved in tissue regeneration. Acts upstream of or within ossification. Predicted to be active in extracellular region. Orthologous to human IGSF10 (immunoglobulin superfamily member 10); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 17beta-estradiol 3-benzoate.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

bone specific CMF608; calvaria mechanical force protein 608; CMF608; immunoglobulin superfamily member 10; LOC310448

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	145,725,868 - 145,754,850 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	145,725,878 - 145,754,579 (-)	Ensembl				GRCr8
mRatBN7.2	2	143,575,710 - 143,605,044 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	143,576,070 - 143,604,773 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	150,215,446 - 150,244,161 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	148,327,870 - 148,356,620 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	142,960,281 - 142,989,031 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	2	144,832,467 - 144,861,219 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	2	145,151,838 - 145,180,588 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	2	144,780,001 - 144,808,747 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	2	144,579,533 - 144,608,281 (-)	NCBI		F344_StmMcwi
Rnor_6.0	2	149,535,199 - 149,564,180 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	149,533,151 - 149,564,113 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	168,967,564 - 168,996,524 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	148,704,646 - 148,734,103 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	138,000,516 - 138,029,209 (-)	NCBI		Celera
RGSC_v3.1	2	148,654,608 - 148,684,073 (-)	NCBI
Cytogenetic Map	2	q26	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Martsolf syndrome 1 (ISO)

Primary Ovarian Failure (ISO)

primary ovarian insufficiency (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (EXP,ISO)

17beta-estradiol 3-benzoate (EXP)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4,4'-trichlorobiphenyl (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

7,12-dimethyltetraphene (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

carbon nanotube (ISO)

clobetasol (ISO)

clotrimazole (EXP)

Cuprizon (EXP)

cyclosporin A (ISO)

dexamethasone (EXP,ISO)

diethylstilbestrol (EXP)

dimethylarsinic acid (EXP)

diquat (ISO)

diuron (EXP)

dorsomorphin (ISO)

endosulfan (EXP)

folic acid (ISO)

furan (EXP)

graphene oxide (ISO)

heparin (EXP)

indometacin (ISO)

iron dichloride (ISO)

ketoconazole (EXP)

lipopolysaccharide (EXP)

methimazole (EXP)

methylmercury chloride (EXP)

microcystin-LR (EXP)

mono(2-ethylhexyl) phthalate (ISO)

N-Nitrosopyrrolidine (ISO)

N1'-[2-[[5-[(dimethylamino)methyl]-2-furanyl]methylthio]ethyl]-N1-methyl-2-nitroethene-1,1-diamine (EXP)

nickel atom (ISO)

okadaic acid (ISO)

ozone (ISO)

paracetamol (ISO)

paraquat (EXP)

PCB138 (ISO)

pioglitazone (ISO)

ranitidine (EXP)

rotenone (EXP,ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

testosterone (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IEA)

nervous system development (IEA)

ossification (IDA,IEA)

regulation of neuron migration (ISO,ISS)

tissue regeneration (IDA)

Cellular Component

extracellular region (IBA,IEA,ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	CMF608-a novel mechanical strain-induced bone-specific protein expressed in early osteochondroprogenitor cells.	Segev O, etal., Bone 2004 Feb;34(2):246-60.

Additional References at PubMed

PMID:27137492

Genomics

Comparative Map Data

Igsf10
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	145,725,868 - 145,754,850 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	145,725,878 - 145,754,579 (-)	Ensembl				GRCr8
mRatBN7.2	2	143,575,710 - 143,605,044 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	143,576,070 - 143,604,773 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	150,215,446 - 150,244,161 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	148,327,870 - 148,356,620 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	142,960,281 - 142,989,031 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	2	144,832,467 - 144,861,219 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	2	145,151,838 - 145,180,588 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	2	144,780,001 - 144,808,747 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	2	144,579,533 - 144,608,281 (-)	NCBI		F344_StmMcwi
Rnor_6.0	2	149,535,199 - 149,564,180 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	149,533,151 - 149,564,113 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	168,967,564 - 168,996,524 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	148,704,646 - 148,734,103 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	138,000,516 - 138,029,209 (-)	NCBI		Celera
RGSC_v3.1	2	148,654,608 - 148,684,073 (-)	NCBI
Cytogenetic Map	2	q26	NCBI

IGSF10
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	151,432,432 - 151,619,925 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	151,425,384 - 151,461,186 (-)	Ensembl			hg38	GRCh38
GRCh37	3	151,153,991 - 151,257,104 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	152,637,167 - 152,659,187 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	3	152,637,174 - 152,659,195	NCBI
Celera	3	149,572,109 - 149,594,842 (-)	NCBI		Celera
Cytogenetic Map	3	q25.1	NCBI
HuRef	3	148,533,138 - 148,555,872 (-)	NCBI		HuRef
CHM1_1	3	151,116,911 - 151,139,641 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	154,193,223 - 154,376,990 (-)	NCBI		T2T-CHM13v2.0

Igsf10
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	59,224,156 - 59,256,836 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	59,224,156 - 59,251,815 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	3	59,316,735 - 59,344,438 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	59,316,735 - 59,344,394 (-)	Ensembl			mm10	GRCm38
MGSCv37	3	59,120,657 - 59,148,178 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	3	59,404,664 - 59,432,185 (-)	NCBI		MGSCv36	mm8
Celera	3	59,004,000 - 59,031,501 (-)	NCBI		Celera
Cytogenetic Map	3	D	NCBI
cM Map	3	29.03	NCBI

Igsf10
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955448	2,528,703 - 2,557,656 (-)	Ensembl
ChiLan1.0	NW_004955448	2,532,973 - 2,557,650 (-)	NCBI	ChiLan1.0	ChiLan1.0

IGSF10
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	149,334,202 - 149,362,921 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	149,339,410 - 149,361,474 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	148,461,331 - 148,488,696 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	156,033,528 - 156,056,003 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	156,030,099 - 156,056,003 (-)	Ensembl			panPan2	panpan1.1

IGSF10
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	46,002,163 - 46,058,656 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	46,002,308 - 46,059,936 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	45,866,591 - 45,923,482 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	46,628,844 - 46,685,867 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	46,629,318 - 46,687,214 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	46,217,698 - 46,274,621 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	46,269,685 - 46,326,605 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	46,546,832 - 46,603,735 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Igsf10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	90,079,550 - 90,109,254 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936758	1,660,313 - 1,686,404 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936758	1,660,254 - 1,686,404 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

IGSF10
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	91,625,431 - 91,679,079 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	91,625,421 - 91,679,494 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	99,845,339 - 99,881,443 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

IGSF10
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	39,200,244 - 39,266,759 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	39,240,849 - 39,265,142 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666041	12,055,884 - 12,081,599 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Igsf10
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	28,862,656 - 28,890,263 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624730	28,862,624 - 28,891,855 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Igsf10
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	95,559,380 - 95,588,155 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Igsf10
162 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	72
Count of miRNA genes:	66
Interacting mature miRNAs:	70
Transcripts:	ENSRNOT00000018628
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2293671	Bss44	Bone structure and strength QTL 44	10.97	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	2	105628029	150628029	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845370	229470703	Rat
1358360	Sradr2	Stress Responsive Adrenal Weight QTL 2	10.24		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	2	124103798	154505346	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	83465462	229820014	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	20695736	231474293	Rat
1298076	Bp166	Blood pressure QTL 166		0.0009	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	138595962	205135428	Rat
1581576	Pur7	Proteinuria QTL 7		0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	2	80396178	220931218	Rat
152025245	Scl81	Serum cholesterol level QTL 81	3.49		blood cholesterol amount (VT:0000180)		2	124537199	209621565	Rat
631198	Cm22	Cardiac mass QTL 22	4.3	0.0008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	78269809	208420281	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	122597372	215234002	Rat
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	27148328	145807373	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	80396178	220931218	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	143565208	188565208	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	4265106	205135428	Rat
1581502	Esta3	Estrogen-induced thymic atrophy QTL 3			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	139067258	192287892	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
1582257	Gluco21	Glucose level QTL 21	3.1	0.0035	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	120039407	159440891	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
2301966	Bp322	Blood pressure QTL 322	3.58		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	144882354	205135428	Rat
1359035	Bp276	Blood pressure QTL 276			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	100807373	145807373	Rat
8662836	Vetf8	Vascular elastic tissue fragility QTL 8	0.66		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	106869825	151869825	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845182	205135428	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	83400752	223709938	Rat
5135226	Leukc2	Leukocyte quantity QTL 2			eosinophil quantity (VT:0002602)	blood eosinophil count (CMO:0000033)	2	120039407	151869825	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
2299162	Iddm32	Insulin dependent diabetes mellitus QTL 32	2.36		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	93602631	145807373	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1359022	Ppulsi1	Prepulse inhibition QTL 1	3.63		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	2	139067258	184067258	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	80396034	220931416	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	78269809	205135428	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	143344967	251712708	Rat
71113	Cari2	Carrageenan-induced inflammation QTL 2	2.7	0.009	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	2	143746578	205135428	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	143344967	251712708	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	114384617	215381366	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
724568	Uae13	Urinary albumin excretion QTL 13	4.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	2	145306936	212705578	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	113746222	205135428	Rat
7488933	Bp368	Blood pressure QTL 368		0.004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	104957381	149957381	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	114384617	215381366	Rat
738007	Anxrr7	Anxiety related response QTL 7	4.4		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	120339555	165339555	Rat
9685068	Swd7	Spike wave discharge measurement QTL 7	3.2	0.01	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge rate (CMO:0001739)	2	143806628	149738646	Rat
1354609	Niddm62	Non-insulin dependent diabetes mellitus QTL 62	4.72	0.000006	insulin secretion trait (VT:0003564)	plasma insulin level (CMO:0000342)	2	117415288	205135428	Rat
2293835	Kiddil5	Kidney dilation QTL 5	3.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	159440891	Rat
1581552	Pur12	Proteinuria QTL 12	5.19	0.0009	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	2	114032149	150226270	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	83465462	225110681	Rat
1558653	Prcr1	Prostate cancer resistance QTL 1	5		prostate integrity trait (VT:0010571)	area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)	2	114440891	159440891	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	47856345	205135428	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	184731399	Rat
1354594	Despr10	Despair related QTL 10		2e-06	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	2	116804572	161804572	Rat
152025206	Hrtrt23	Heart rate QTL 23	5.98		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	76328396	209350714	Rat
152025204	Hrtrt22	Heart rate QTL 22	5.6		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat

Markers in Region

RH134080

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	2	145,744,573 - 145,744,765 (+)	Marker Load Pipeline
mRatBN7.2	2	143,594,767 - 143,594,959 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	149,553,891 - 149,554,082	NCBI	Rnor6.0
Rnor_5.0	2	168,986,267 - 168,986,458	UniSTS	Rnor5.0
RGSC_v3.4	2	148,723,338 - 148,723,529	UniSTS	RGSC3.4
Celera	2	138,019,204 - 138,019,395	UniSTS
RH 3.4 Map	2	880.9	UniSTS
Cytogenetic Map	2	q31	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	155	91	90	59	36	59	6	284	136	11	134	65	92	31	12	12

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_198768	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590861	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590862	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102264	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102265	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102266	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102267	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102268	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC128510	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY273816	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000018628 ⟹ ENSRNOP00000018629

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	145,725,878 - 145,754,579 (-)	Ensembl
mRatBN7.2 Ensembl	2	143,576,070 - 143,604,773 (-)	Ensembl
Rnor_6.0 Ensembl	2	149,535,484 - 149,564,113 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000086186 ⟹ ENSRNOP00000069220

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	2	149,533,151 - 149,563,905 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000136047 ⟹ ENSRNOP00000112186

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	145,725,878 - 145,754,246 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000152418 ⟹ ENSRNOP00000103563

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	145,725,878 - 145,745,964 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000166530 ⟹ ENSRNOP00000112059

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	145,725,878 - 145,752,433 (-)	Ensembl

RefSeq Acc Id:

NM_198768 ⟹ NP_942063

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	145,725,878 - 145,754,579 (-)	NCBI
mRatBN7.2	2	143,576,068 - 143,604,773 (-)	NCBI
Dahl_SR_JrHsd	2	144,832,467 - 144,861,219 (-)	NCBI
Lyon_Normotensive	2	145,151,838 - 145,180,588 (-)	NCBI
Lyon_Hypertensive	2	144,780,001 - 144,808,747 (-)	NCBI
F344_StmMcwi	2	144,579,533 - 144,608,281 (-)	NCBI
Rnor_6.0	2	149,535,199 - 149,563,896 (-)	NCBI
Rnor_5.0	2	168,967,564 - 168,996,524 (-)	NCBI
RGSC_v3.4	2	148,704,646 - 148,734,103 (-)	RGD
Celera	2	138,000,516 - 138,029,209 (-)	RGD

Sequence:

show sequence

GTCCAGAAAAAGGAAAGTGCTGGAGGGGAGTGGGGACAAAAGCAGCGACCAAGTGAATGTCACT
TCAGTGACTGAGGCCAGGCAAAACGCGCGGGAAGGATTTTGTGTAGCTTGGGACCCTTTCATAG
ACACTGATGACACGTTTACGCAAAATAGAAATTTGAGGAGAAACGCCTGGGCCTTCGGAAAGGA
GTGATTGATTAGTACTTGCAAGTTTAGGTGACTTTAAGGAGAACTAACTAATGTATACTATTGA
GGGAGGAGGAAGAGCATTACAGAGTTTCCAGCAGCAGCAGGAAAGCTTTGGTTAATTTGGAAAT
GGATGATAGCATTAAAATAACAGAAGCGCCTCCAGGTCTCTGAAGCTTCAGTCCCCCAGCTGAA
AGCCAGAAAAGACTAAGCCCACTAAGCCTTTTGATCCCTTTGGAAGCAAAGAACTTTCCTTCCC
TGGGGTGAAGACTCTCCTCAGAAGATTTCCTGTCTCTGCCTATGTTACAAGAGGAATCAAAACC
AAGACAGAAGAGCTCAGGATGCAGGTGAGAGGCAGGGAAGTCAGCGGCTTGTTGATCTCCCTCA
CTGCTGTCTGCCTGGTGGTCACCCCTGGGAGCAGGGCCTGTCCTCGCCGCTGTGCCTGCTATGT
GCCCACAGAGGTGCACTGTACATTTCGGTACCTGACCTCCATCCCAGATGGCATCCCGGCCAAT
GTGGAACGAATAAATTTAGGATATAACAGCCTTACTAGATTGACAGAAAACGACTTTGATGGCC
TGAGCAAACTGGAGTTACTCATGCTGCACAGTAATGGCATTCACAGAGTCAGTGACAAGACCTT
CTCGGGCTTGCAGTCCTTGCAGGTCTTAAAAATGAGCTATAACAAAGTCCAAATCATTCGGAAG
GATACTTTCTACGGACTCGGGAGCTTGGTCCGGTTGCACCTGGATCACAACAACATTGAATTCA
TCAACCCTGAGGCCTTTTATGGACTTACCTCGCTCCGCTTGGTACATTTAGAAGGAAACCGGCT
CACAAAGCTCCATCCAGACACATTTGTCTCATTAAGCTATCTCCAGATATTTAAAACCTCTTTC
ATTAAGTACCTGTTCTTGTCTGATAACTTCCTGACCTCCCTCCCAAAAGAAATGGTCTCCTACA
TGCCAAACCTAGAAAGCCTGTATTTGCATGGAAACCCATGGACCTGTGACTGCCATTTAAAGTG
GTTGTCTGAGTGGATGCAGGGAAACCCAGATATAATAAAATGCAAGAAAGACAGAAGCTCTTCC
AGTCCTCAGCAATGTCCCCTTTGCATGAACCCCAGGATCTCTAAAGGCAGACCCTTTGCTATGG
TACCATCTGGAGCTTTCCTATGTACAAAGCCAACCATTGATCCATCACTGAAGTCAAAGAGCCT
GGTTACTCAGGAGGACAATGGATCTGCCTCCACCTCACCTCAAGATTTCATAGAACCCTTTGGC
TCCTTGTCTTTGAACATGACAGACCTGTCTGGAAATAAGGCCGACATGGTCTGTAGTATCCAAA
AGCCATCAAGGACATCACCAACTGCATTCACTGAAGAAAATGACTACATCATGCTAAATGCGTC
ATTTTCCACAAATCTTGTGTGCAGTGTAGATTATAATCACATCCAGCCAGTGTGGCAACTTCTG
GCTTTATACAGTGACTCTCCTCTGATACTAGAAAGGAAGCCCCAGCTTACCGAGACTCCTTCAC
TGTCTTCTAGATATAAACAGGTGGCTCTTAGGCCTGAAGACATTTTTACCAGCATAGAGGCTGA
TGTCAGAGCAGACCCTTTTTGGTTCCAACAAGAAAAAATTGTCTTGCAGCTGAACAGAACTGCC
ACCACACTTAGCACATTACAGATCCAGTTTTCCACTGATGCTCAAATCGCTTTACCAAGGGCGG
AGATGAGAGCGGAGAGACTCAAATGGACCATGATCCTGATGATGAACAATCCCAAACTGGAACG
CACTGTCCTGGTTGGCGGCACTATTGCCCTGAGCTGTCCAGGCAAAGGCGACCCTTCACCTCAC
TTGGAATGGCTTCTAGCTGATGGGAGTAAAGTGAGAGCCCCTTACGTTAGCGAGGATGGGCGAA
TCCTAATAGACAAAAATGGGAAGTTGGAACTGCAGATGGCTGACAGCTTTGATGCAGGTCTTTA
CCACTGCATAAGCACCAATGATGCAGATGCGGATGTTCTCACATACAGGATAACTGTGGTAGAG
CCCTATGGAGAAAGCACACATGACAGTGGAGTCCAGCACACAGTGGTTACGGGTGAGACGCTCG
ACCTTCCATGCCTTTCCACGGGTGTTCCAGATGCTTCTATTAGCTGGATTCTTCCAGGGAACAC
TGTGTTCTCTCAGCCATCAAGAGACAGGCAAATTCTTAACAATGGGACCTTAAGAATATTACAG
GTTACGCCAAAAGATCAAGGTCATTACCAATGTGTGGCTGCCAACCCATCAGGGGCCGACTTTT
CCAGTTTTAAAGTTTCAGTTCAAAAGAAAGGCCAAAGGATGGTTGAGCATGACAGGGAGGCAGG
TGGATCTGGACTTGGAGAACCCAACTCCAGTGTTTCCCTTAAGCAGCCAGCATCTTTGAAACTC
TCTGCATCAGCTTTGACAGGGTCAGAGGCTGGAAAACAAGTCTCCGGTGTACATAGGAAGAACA
AACATAGAGACTTAATACATCGGCGGCGTGGGGATTCCACGCTCCGGCGATTCAGGGAGCATAG
GAGGCAGCTCCCTCTCTCTGCTCGGAGAATTGACCCGCAACGCTGGGCAGCACTTCTAGAAAAA
GCCAAAAAGAATTCTGTGCCAAAAAAGCAAGAAAATACCACAGTAAAGCCAGTGCCACTGGCTG
TTCCCCTCGTGGAACTCACTGACGAGGAAAAGGATGCCTCTGGCATGATTCCTCCAGATGAAGA
ATTCATGGTTCTGAAAACTAAGGCTTCTGGTGTCCCAGGAAGGTCACCAACTGCTGACTCTGGA
CCAGTAAATCATGGTTTTATGACGAGTATAGCTTCTGGCACAGAAGTCTCAACTGTGAATCCAC
AAACACTACAATCTGAGCACCTTCCTGATTTCAAATTATTTAGTGTAACAAACGGTACAGCTGT
GACAAAGAGTATGAACCCATCCATAGCAAGCAAAATAGAAGATACAACCAACCAAAACCCAATC
ATTATCTTTCCATCAGTAGCTGAAATTCGAGATTCTGCTCAGGCAGGAAGAGCATCTTCCCAAA
GTGCACACCCTGTAACAGGGGGAAACATGGCTACCTATGGCCATACCAACACATATAGTAGCTT
TACCAGCAAAGCCAGTACAGTCTTGCAGCCAATAAATCCAACAGAAAGTTATGGACCTCAGATA
CCTATTACAGGAGTCAGCAGACCTAGCAGTAGTGACATCTCTTCTCACACTACTGCAGACCCTA
GCTTCTCCAGTCACCCTTCAGGTTCACACACCACTGCCTCGTCTTTATTTCACATTCCTAGAAA
CAACAATACAGGTAACTTCCCCTTGTCCAGGCACTTGGGAAGAGAGAGGACAATTTGGAGCAGA
GGGAGAGTTAAAAACCCACATAGAACCCCAGTTCTCCGACGGCATAGACACAGGACTGTGAGGC
CAGCAATCAAGGGACCTGCTAACAAAAATGTGAGCCAAGTTCCAGCCACAGAGTACCCTGGGAT
GTGCCACACATGTCCTTCCGCAGAGGGGCTCACAGTGGCTACTGCAGCACTGTCAGTTCCAAGT
TCATCCCACAGTGCCCTCCCCAAAACTAATAATGTTGGGGTCATAGCAGAAGAGTCTACCACTG
TGGTCAAGAAACCACTGTTACTATTTAAGGACAAACAAAATGTAGATATTGAGATAATAACAAC
CACTACAAAATATTCCGGAGGGGAAAGTAACCACGTGATTCCTACGGAAGCAAGCATGACTTCT
GCTCCAACATCTGTATCCCTGGGGAAATCTCCTGTAGACAATAGTGGTCACCTGAGCATGCCTG
GGACCATCCAAACTGGGAAAGATTCAGTGGAAACAACACCACTTCCCAGCCCCCTCAGCACACC
CTCAATACCAACAAGCACAAAATTCTCAAAGAGGAAAACTCCCTTGCACCAGATCTTTGTAAAT
AACCAGAAGAAGGAGGGGATGTTAAAGAATCCATATCAATTCGGTTTACAAAAGAACCCAGCCG
CAAAGCTTCCCAAAATAGCTCCTCTTTTACCCACAGGTCAGAGTTCCCCCTCAGATTCTACAAC
TCTCTTGACAAGTCCGCCACCAGCTCTGTCTACAACAATGGCTGCCACTCAGAACAAGGGCACT
GAAGTAGTATCAGGTGCCAGAAGTCTCTCAGCAGGGAAGAAGCAGCCCTTCACCAACTCCTCTC
CAGTGCTTCCTAGCACCATAAGCAAGAGATCTAATACATTAAACTTCTTGTCAACGGAAACCCC
CACAGTGACAAGTCCTACTGCTACTGCATCTGTCATTATGTCTGAAACCCAACGAACAAGATCC
AAAGAAGCAAAAGACCAAATAAAGGGGCCTCGGAAGAACAGAAACAACGCAAACACCACCCCCA
GGCAGGTTTCTGGCTATAGTGCATACTCAGCTCTAACAACAGCTGATACCCCCTTGGCTTTCAG
TCATTCCCCACGACAAGATGATGGTGGAAATGTAAGTGCAGTTGCTTATCACTCAACAACCTCT
CTTCTGGCCATAACTGAACTGTTTGAGAAGTACACCCAGACTTTGGGAAATACAACAGCTTTGG
AAACAACGTTGTTGAGCAAATCACAGGAGAGTACCACAGTGAAAAGAGCCTCAGACACACCACC
ACCACTCCTCAGCAGTGGGGCGCCCCCAGTGCCCACTCCTTCCCCACCTCCTTTTACTAAGGGT
GTGGTTACAGACAGCAAAGTCACATCAGCTTTCCAGATGACGTCAAATAGAGTGGTCACCATAT
ATGAATCTTCAAGGCACAATACAGATCTGCAGCAACCCTCAGCAGAGGCTAGCCCCAATCCTGA
GATCATAACTGGAACCACTGACTCTCCCTCTAATCTGTTTCCATCCACTTCTGTGCCAGCACTA
AGGGTAGATAAACCACAGAATTCTAAATGGAAGCCCTCTCCCTGGCCAGAACACAAATATCAGC
TCAAGTCATACTCCGAAACCATTGAGAAGGGCAAAAGGCCAGCAGTAAGCATGTCCCCCCACCT
CAGCCTTCCAGAGGCCAGCACTCATGCCTCACACTGGAATACACAGAAGCATGCAGAAAAGAGT
GTTTTTGATAAGAAACCTGGTCAAAACCCAACTTCCAAACATCTGCCTTACGTCTCTCTACCTA
AGACTCTATTGAAAAAGCCAAGAATAATTGGAGGAAAGGCTGCAAGCTTTACAGTTCCAGCTAA
TTCAGACGTTTTTCTTCCTTGTGAGGCTGTTGGAGACCCACTGCCCATCATCCACTGGACCAGA
GTTTCATCAGGACTTGAAATATCCCAAGGGACACAGAAAAGCCGGTTCCACGTGCTTCCCAATG
GCACCTTGTCCATCCAGAGGGTCAGTATTCAGGACCGTGGACAGTACCTGTGCTCTGCATTTAA
TCCACTGGGCGTAGACCATTTTCATGTCTCTTTGTCTGTGGTTTTTTACCCGGCAAGGATTTTG
GACAGACATGTCAAGGAGATCACAGTTCACTTTGGAAGTACTGTGGAACTAAAGTGCAGAGTGG
AGGGTATGCCGAGGCCTACGGTTTCCTGGATACTTGCAAACCAAACGGTGGTCTCAGAAACGGC
CAAGGGAAGCAGAAAGGTCTGGGTAACACCTGATGGAACATTGATCATCTATAATCTGAGTCTT
TATGATCGTGGTTTTTACAAGTGTGTGGCCAGCAACCCATCTGGCCAGGATTCACTGTTGGTTA
AGATACAAGTCATCACAGCTCCCCCTGTCATTATAGAGCAAAAGAGGCAAGCCATCGTTGGGGT
TTTAGGTGGAAGTTTGAAACTGCCCTGCACTGCAAAAGGAACTCCCCAGCCTAGTGTTCACTGG
GTCCTTTATGATGGGACTGAACTAAAACCATTGCAGTTGACTCATTCCAGATTTTTCTTGTATC
CAAATGGAACTCTGTATATAAGAAGCATCGCTCCTTCAGTGAGGGGCACTTATGAGTGCATTGC
CACCAGCTCCTCAGGCTCAGAGAGAAGGGTAGTGATTCTTACTGTGGAAGAGGGAGAGACAATC
CCCAGGATAGAAACTGCCTCTCAGAAATGGACTGAGGTGAATTTGGGTGAGAAATTACTACTGA
ACTGCTCAGCTACTGGGGATCCAAAGCCTAGAATAATCTGGAGGCTGCCATCCAAGGCTGTCAT
CGACCAGTGGCACAGAATGGGCAGCCGAATCCACGTCTACCCAAATGGATCCTTGGTGGTTGGG
TCAGTGACGGAAAAAGACGCTGGTGACTACTTATGTGTGGCAAGAAACAAAATGGGAGATGACC
TAGTCCTGATGCATGTCCGCCTGAGATTGACACCTGCCAAAATTGAACAGAAGCAGTATTTTAA
GAAGCAAGTGCTCCATGGGAAAGATTTCCAAGTTGACTGCAAGGCCTCTGGCTCCCCTGTGCCT
GAGGTATCCTGGAGTTTGCCTGATGGGACAGTGCTCAACAATGTAGCCCAAGCTGATGACAGTG
GCTATAGGACCAAGAGGTACACCCTTTTCCACAATGGAACCTTGTATTTCAACAACGTTGGGAT
GGCAGAGGAAGGAGATTATATCTGCTCTGCCCAGAACACCTTAGGGAAAGATGAGATGAAAGTC
CACCTAACAGTTCTAACAGCCATCCCACGGATAAGGCAAAGCTACAAGACCACCATGAGGCTCA
GGGCTGGAGAAACAGCTGTCCTTGACTGCGAGGTCACTGGGGAACCGAAGCCCAATGTATTTTG
GTTGCTGCCTTCCAACAATGTCATTTCATTCTCCAATGACAGGTTCACATTTCATGCCAATAGA
ACTTTGTCCATCCATAAAGTGAAACCACTTGACTCTGGGGACTATGTGTGCGTAGCTCAGAATC
CTAGTGGGGATGACACTAAGACATACAAACTGGACATTGTCTCTAAACCTCCATTAATCAATGG
CCTGTATGCAAACAAGACTGTTATTAAAGCCACAGCCATTCGGCACTCCAAAAAATACTTTGAC
TGCAGAGCAGATGGGATCCCATCTTCCCAGGTCACGTGGATTATGCCAGGCAATATTTTCCTCC
CAGCTCCATACTTTGGAAGCAGAGTCACGGTCCATCCAAATGGAACCTTGGAGATGAGGAACAT
CCGGCTTTCTGACTCTGCGGACTTCACCTGTGTGGTTCGGAGCGAGGGAGGAGAGAGTGTGTTG
GTAGTGCAGTTAGAAGTCCTAGAAATGCTGAGAAGACCAACATTCAGAAACCCATTCAACGAAA
AAGTCATCGCCCAAGCTGGCAAGCCCGTAGCACTGAACTGCTCTGTGGATGGGAACCCCCCACC
TGAAATTACCTGGATCTTACCTGACGGCACACAGTTTGCTAACAGACCACACAATTCCCCGTAT
CTGATGGCAGGCAATGGCTCTCTCATCCTTTACAAAGCAACTCGGAACAAGTCAGGGAAGTATC
GCTGTGCAGCCAGGAATAAGGTTGGCTACATCGAGAAACTCATCCTGTTAGAGATTGGGCAGAA
GCCAGTCATTCTGACATACGAACCAGGGATGGTGAAGAGCGTCAGTGGGGAACCGTTATCACTG
CATTGTGTGTCTGATGGGATCCCCAAGCCAAATGTCAAGTGGACTACACCGGGTGGCCATGTAA
TCGACAGGCCTCAAGTGGATGGAAAATACATACTGCATGAAAATGGCACGCTGGTCATCAAAGC
AACAACAGCTCACGACCAAGGAAATTATATCTGTAGGGCTCAAAACAGTGTTGGCCAGGCAGTT
ATTAGCGTGTCAGTGATGGTTGTGGCCTACCCTCCCCGAATCATAAACTACCTACCCAGGAACA
TGCTCAGGAGGACAGGGGAAGCCATGCAGCTCCACTGTGTGGCCTTGGGAATCCCCAAGCCAAA
AGTCACCTGGGAGACGCCAAGACACTCCCTGCTCTCAAAAGCAACAGCAAGAAAACCCCATAGA
AGTGAGATGCTTCACCCACAAGGTACGCTGGTCATTCAGAATCTCCAAACCTCGGATTCCGGAG
TCTATAAGTGCAGAGCTCAGAACCTACTTGGGACTGATTACGCAACAACTTACATCCAGGTACT
CTGACAGGAAGGGGGAGACTAAAATTCAACAGAAGTCCACATCCACAGGGTTTATTTTTTGGAA
GAAGTTTAATCAAAGGCAGCCATAGGCATGTAAATGAGTCTGAATACATTTACAGTATTAAATT
TACAATGGACATGCGATGAGACTTGTAAATGAAAGCATTGTGAACTGAAACCGAGTCTCTGTGG
ATCTCAAAGCAAACTCTTAACTTAAGGCACTTTGATTTTGCCAACAAATAATAACAAACATTAA
GAGAAAAAAATGATCCACTACGAAATAACAAACGGCTAATGCACCTGAATTCTCAGTAAAAAGA
CCTTTCTCTCGCTAACAGTTGCCAGCTGCCTCGTGTCTGTTTCCTACCAATGTCACAAACATCG
CACACAGGGTGAATGGAGTCAACGGGAAAGATTAAGTTTGCGGTCTGTGTAAATCTCAATGTAC
AAATATTCTGTCNCTGGTTTATAAACATTTTGATAAAACCGAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA

hide sequence

RefSeq Acc Id:

XM_017590862 ⟹ XP_017446351

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	145,725,868 - 145,754,850 (-)	NCBI
mRatBN7.2	2	143,575,710 - 143,605,043 (-)	NCBI
Rnor_6.0	2	149,535,212 - 149,564,180 (-)	NCBI

Sequence:

show sequence

CAAACGCGCAAGCGAGCCTGAGCCTGCGTTGGCGCTGGTGGTCCCCGGGTCGATGGCCCGCCCA
TTCCCAGAAGCTGCTGCTATAGCTACGTCACCTGCCCCGCCCTCCTCCTCCGGAGCGAAGACCC
CTGGAGGCTGAGCAGACCCCAAAGGCGGTGCAATTCCATTGGTCCAAGGCAGAGCAAAGAACTT
TCCTTCCCTGGGGTGAAGACTCTCCTCAGAAGATTTCCTGTCTCTGCCTATGTTACAAGAGGAA
TCAAAACCAAGACAGAAGAGCTCAGGATGCAGGTGAGAGGCAGGGAAGTCAGCGGCTTGTTGAT
CTCCCTCACTGCTGTCTGCCTGGTGGTCACCCCTGGGAGCAGGGCCTGTCCTCGCCGCTGTGCC
TGCTATGTGCCCACAGAGGTGCACTGTACATTTCGGTACCTGACCTCCATCCCAGATGGCATCC
CGGCCAATGTGGAACGAATAAATTTAGGATATAACAGCCTTACTAGATTGACAGAAAACGACTT
TGATGGCCTGAGCAAACTGGAGTTACTCATGCTGCACAGTAATGGCATTCACAGAGTCAGTGAC
AAGACCTTCTCGGGATTGCAGTCCTTGCAGGTCTTAAAAATAAGCTATAACAAAGTCCAAATCG
TTCGGAAGGATACTTTCTACGGACTCGGGAGCTTGGTCCGGTTGCACCTGGATCACAACAACAT
TGAATTCATCAACCCTGAGGCCTTTTATGGACTTACCTCGCTCCGCTTGGTACATTTAGAAGGA
AACCGGCTCACAAAGCTCCATCCAGACACATTTGTCTCATTAAGCTATCTCCAGATATTTAAAA
CCTCTTTCATTAAGTACCTGTTCTTGTCTGATAACTTCCTGACCTCCCTCCCAAAAGAAATGGT
CTCCTACATGCCAAACCTAGAAAGCCTGTATTTGCATGGAAACCCATGGACCTGTGACTGCCAT
TTAAAGTGGTTGTCTGAGTGGATGCAGGGAAACCCAGATATAATAAAATGCAAGAAAGACAGAA
GCTCTTCCAGTCCTCAGCAATGTCCCCTTTGCATGAACCCCAGGATCTCTAAAGGCAGACCCTT
TGCTATGGTACCATCTGGAGCTTTCCTATGTACAAAGCCAACCATTGATCCATCACTGAAGTCA
AAGAGCCTGGTTACTCAGGAGGACAATGGATCTGCCTCCACCTCACCTCAAGATTTCATAGAAC
CCTTTGGCTCCTTGTCTTTGAACATGACAGACCTGTCTGGAAATAAGGCCGACATGGTCTGTAG
TATCCAAAAGCCATCAAGGACATCACCAACTGCATTCACTGAAGAAAATGACTACATCATGCTA
AATGCGTCATTTTCCACAAATCTTGTGTGCAGTGTAGATTATAATCACATCCAGCCAGTGTGGC
AACTTCTGGCTTTATACAGTGACTCTCCTCTGATACTAGAAAGGAAGCCCCAGCTTACCGAGAC
TCCTTCACTGTCTTCTAGATATAAACAGGTGGCTCTTAGGCCTGAAGACATTTTTACCAGCATA
GAGGCTGATGTCAGAGCAGACCCTTTTTGGTTCCAACAAGAAAAAATTGTCTTGCAGCTGAACA
GAACCGCCACCACACTTAGCACATTACAGATCCAGTTTTCCACTGATGCTCAAATCGCTTTACC
AAGGGCGGAGATGAGAGCGGAGAGACTCAAATGGACCATGATCCTGATGATGAACAATCCCAAA
CTGGAACGCACTGTCCTGGTTGGCGGCACTATTGCCCTGAGCTGTCCAGGCAAAGGCGACCCTT
CACCTCACTTGGAATGGCTTCTAGCTGATGGGAGTAAAGTGAGAGCCCCTTACGTTAGCGAGGA
TGGGCGAATCCTAATAGACAAAAATGGGAAGTTGGAACTGCAGATGGCTGACAGCTTTGATGCA
GGTCTTTACCACTGCATAAGCACCAATGATGCAGATGCGGATGTTCTCACATACAGGATAACTG
TGGTAGAGCCCTATGGAGAAAGCACACATGACAGTGGAGTCCAGCACACAGTGGTTACGGGTGA
GACGCTCGACCTTCCATGCCTTTCCACGGGTGTTCCAGATGCTTCTATTAGCTGGATTCTTCCA
GGGAACACTGTGTTCTCTCAGCCATCAAGAGACAGGCAAATTCTTAACAATGGGACCTTAAGAA
TATTACAGGTTACGCCAAAAGATCAAGGTCATTACCAATGTGTGGCTGCCAACCCATCAGGGGC
CGACTTTTCCAGTTTTAAAGTTTCAGTTCAAAAGAAAGGCCAAAGGATGGTTGAGCATGACAGG
GAGGCAGGTGGATCTGGACTTGGAGAACCCAACTCCAGTGTTTCCCTTAAGCAGCCAGCATCTT
TGAAACTCTCTGCATCAGCTTTGACAGGGTCAGAGGCTGGAAAACAAGTCTCCGGTGTACATAG
GAAGAACAAACATAGAGACTTAATACATCGGCGGCGTGGGGATTCCACACTCCGGCGATTCAGG
GAGCATAGGAGGCAGCTCCCTCTCTCTGCTCGGAGAATTGACCCGCAACGCTGGGCAGCACTTC
TAGAAAAAGCCAAAAAGAATTCTGTGCCAAAAAAGCAAGAAAATACCACAGTAAAGCCAGTGCC
ACTGGCTGTTCCCCTCGTGGAACTCACTGACGAGGAAAAGGATGCCTCTGGCATGATTCCTCCA
GATGAAGAATTCATGGTTCTGAAAACTAAGGCTTCTGGTGTCCCAGGAAGGTCACCAACTGCTG
ACTCTGGACCAGTAAATCATGGTTTTATGACGAGTATAGCTTCTGGCACAGAAGTCTCAACTGT
GAATCCACAAACACTACAATCTGAGCACCTTCCTGATTTCAAATTATTTAGTGTAACAAACGGT
ACAGCTGTGACAAAGAGTATGAACCCATCCATAGCAAGCAAAATAGAAGATACAACCAACCAAA
ACCCAATCATTATCTTTCCATCAGTAGCTGAAATTCGAGATTCTGCTCAGGCAGGAAGAGCATC
TTCCCAAAGTGCACACCCTGTAACAGGGGGAAACATGGCTACCTATGGCCATACCAACACATAT
AGTAGCTTTACCAGCAAAGCCAGTACAGTCTTGCAGCCAATAAATCCAACAGAAAGTTATGGAC
CTCAGATACCTATTACAGGAGTCAGCAGACCTAGCAGTAGTGACATCTCTTCTCACACTACTGC
AGACCCTAGCTTCTCCAGTCACCCTTCAGGTTCACACACCACTGCCTCGTCTTTATTTCACATT
CCTAGAAACAACAATACAGGTAACTTCCCCTTGTCCAGGCACTTGGGAAGAGAGAGGACAATTT
GGAGCAGAGGGAGAGTTAAAAACCCACATAGAACCCCAGTTCTCCGACGGCATAGACACAGGAC
TGTGAGGCCAGCAATCAAGGGACCTGCTAACAAAAATGTGAGCCAAGTTCCAGCCACAGAGTAC
CCTGGGATGTGCCACACATGTCCTTCCGCAGAGGGGCTCACAGTGGCTACTGCAGCACTGTCAG
TTCCAAGTTCATCCCACAGTGCCCTCCCCAAAGCTAATAATGTTGGGGTCATAGCAGAAGAGTC
TACCACTGTGGTCAAGAAACCACTGTTACTATTTAAGGACAAACAAAATGTAGATATTGAGATA
ATAACAACCACTACAAAATATTCCGGAGGGGAAAGTAACCACGTGATTCCTACGGAAGCAAGCA
TGACTTCTGCTCCAACATCTGTATCCCTGGGGAAATCTCCTGTAGACAATACTGGTCACCTGAG
CATGCCTGGGACCATCCAAACTGGGAAAGATTCAGTGGAAACAACACCACTTCCCAGCCCCCTC
AGCACACCCTCAATACCAACAAGCACAAAATTCTCAAAGAGGAAAACTCCCTTGCACCAGATCT
TTGTAAATAACCAGAAGAAGGAGGGGATGTTAAAGAATCCATATCAATTCGGTTTACAAAAGAA
CCCAGCCGCAAAGCTTCCCAAAATAGCTCCTCTTTTACCCACAGGTCAGAGTTCCCCCTCAGAT
TCTACAACTCTCTTGACAAGTCCACCACCAGCTCTGTCTACAACAATGGCTGCCACTCAGAACA
AGGGCACTGAAGTAGTATCAGGTGCCAGAAGTCTCTCAGCAGGGAAGAAGCAGCCCTTCACCAA
CTCCTCTCCAGTGCTTCCTAGCACCATAAGCAAGAGATCTAATACATTAAACTTCTTGTCAACG
GAAACCCCCACAGTGACAAGTCCTACTGCTACTGCATCTGTCATTATGTCTGAAACCCAACGAA
CAAGATCCAAAGAAGCAAAAGACCAAATAAAGGGGCCTCGGAAGAACAGAAACAACGCAAGCAC
CACCCCCAGGCAGGTTTCTGGCTATAGTGCATACTCAGCTCTAACAACAGCTGATACCCCCTTG
GCTTTCAGTCATTCCCCACGACAAGATGATGGTGGAAATGTAAGTGCAGTTGCTTATCACTCAA
CAACCTCTCTTCTGGCCATAACTGAACTGTTTGAGAAGTACACCCAGACTTTGGGAAATACAAC
AGCTTTGGAAACAATGTTGTTGAGCAAATCACAGGAGAGTACCACAGTGAAAAGAGCCTCAGAC
ACACCACCACCACTCCTCAGCAGTGGGGCGCCCCCAGTGCCCACTCCTTCCCCACCTCCTTTTA
CTAAGGGTGTGGTTACAGACAGCAAAGTCACATCAGCTTTCCAGATGACGTCAAATAGAGTGGT
CACCATATATGAATCTTCAAGGCACAATACAGATCTGCAGCAACCCTCAGCAGAGGCTAGCCCC
AATCCTGAGATCATAACTGGAACCACTGACTCTCCCTCTAATCTGTTTCCATCCACTTCTGTGC
CAGCACTAAGGGTAGATAAACCACAGAATTCTAAATGGAAGCCCTCTCCCTGGCCAGAACACAA
ATATCAGCTCAAGTCATACTCCGAAACCATTGAGAAGGGCAAAAGGCCAGCAGTAAGCATGTCC
CCCCACCTCAGCCTTCCAGAGGCCAGCACTCATGCCTCACACTGGAATACACAGAAGCATGCAG
AAAAGAGTGTCTTTGATAAGAAACCTGCTCAAAACCCAACTTCCAAACATCTGCCTTACGTCTC
TCTACCTAAGACTCTATTGAAAAAGCCAAGAATAATTGGAGGAAAGGCTGCAAGCTTTACAGTT
CCAGCTAATTCAGACGTCTTTCTTCCTTGTGAGGCTGTTGGAGACCCACTGCCCATCATCCACT
GGACCAGAGTCTCATCAGGACTTGAAATATCCCAAGGGACACAGAAAAGCCGGTTCCACGTGCT
TCCCAATGGCACCTTGTCCATCCAGAGGGTCAGTATTCAGGACCGTGGACAGTACCTGTGCTCT
GCATCTAATCCACTGGGCGTAGACCATCTTCATGTCTCTTTGTCTGTGGTTTCTTACCCGGCAA
GGATTCTGGACAGACATGTCAAGGAGATCACAGTTCACTCTGGAAGTACTGTGGAACTAAAGTG
CAGAGTGGAGGGTATGCCGAGGCCTACGGTTTCCTGGATACTTGCAAACCAAACGGTGGTCTCA
GAAACGGCCAAGGGAAGCAGAAAGGTCTGGGTAACACCTGATGGAACATTGATCATCTATAATC
TGAGTCTTTATGATCGTGGTTTTTATAAGTGTGTGGCCAGCAACCCATCTGGCCAGGATTCACT
GTTGGTTAAGATACAAGTCATCACAGCTCCCCCTGTCATTATAGAGCAAAAGAGGCAAGCCATC
GTTGGGGTTTTAGGTGGAAGTTTGAAACTGCCCTGCACTGCAAAAGGAACTCCCCAGCCTAGTG
TTCACTGGGTCCTTTATGATGGGACTGAACTAAAACCATTGCAGTTGACTCATTCCAGATTTTT
CTTGTATCCAAATGGAACTCTGTATATAAGAAGCATCGCTCCTTCAGTGAGGGGCACTTATGAG
TGCATTGCCACCAGCTCCTCAGGCTCAGAGAGAAGGGTAGTGATTCTTACTGTGGAAGAGGGAG
AGACAATCCCCAGGATAGAAACTGCCTCTCAGAAATGGACTGAGGTGAATTTGGGTGAGAAATT
ACTACTGAACTGCTCAGCTACTGGGGATCCAAAGCCTAGAATAATCTGGAGGCTGCCATCCAAG
GCTGTCATCGACCAGTGGCACAGAATGGGCAGCCGAATCCACGTCTACCCAAATGGATCCTTGG
TGGTTGGGTCAGTGACGGAAAAAGACGCTGGTGACTACTTATGTGTGGCAAGAAACAAAATGGG
AGATGACCTGGTCCTGATGCATGTCCGCCTGAGATTGACACCTGCCAAAATTGAACAGAAGCAG
TATTTTAAGAAGCAAGTGCTCCATGGGAAAGATTTCCAAGTTGACTGCAAGGCTTCTGGCTCCC
CTGTGCCTGAGGTATCCTGGAGTTTGCCTGATGGGACAGTGCTCAACAATGTAGCCCAAGCTGA
TGACAGTGGCTATAGGACCAAGAGGTACACCCTTTTCCACAATGGAACCTTGTATTTCAACAAC
GTTGGGATGGCAGAGGAAGGAGATTATATCTGCTCTGCCCAGAACACCTTAGGGAAAGATGAGA
TGAAAGTCCACCTAACAGTTCTAACAGCCATCCCACGGATAAGGCAAAGCTACAAGACCACCAT
GAGGCTCAGGGCTGGAGACACAGCTGTCCTTGACTGCGAGGTCACTGGGGAACCGAAGCCCAAT
GTATTTTGGTTGCTGCCTTCCAACAATGTCATTTCATTCTCCAATGACAGGTTCACATTTCATG
CCAATAGAACTTTGTCCATCCATAAAGTGAAACCACTTGACTCTGGGGACTATGTGTGCGTAGC
TCAGAATCCTAGTGGGGATGACACTAAGACATACAAACTGGACATTGTCTCTAAACCTCCATTA
ATCAATGGCCTGTATGCAAACAAGACTGTTATTAAAGCCACAGCCATTCGGCACTCCAAAAAAT
ACTTTGACTGCAGAGCAGATGGGATCCCATCTTCCCAGGTCACGTGGATTATGCCAGGCAATAT
TTTCCTCCCAGCTCCATACTTTGGAAGCAGAGTCACGGTCCATCCAAATGGAACCTTGGAGATG
AGGAACATCCGGCTTTCTGACTCTGCGGACTTCACCTGTGTGGTTCGGAGCGAGGGAGGAGAGA
GTGTGTTGGTAGTGCAGTTAGAAGTCCTGGAAATGCTGAGAAGACCAACATTCAGAAACCCATT
CAACGAAAAAGTCATCGCCCAAGCTGGCAAGCCCGTAGCACTGAACTGCTCTGTGGATGGGAAC
CCCCCACCTGAAATTACCTGGATCTTACCTGACGGCACACAGTTTGCTAACAGACCACACAATT
CCCCGTATCTGATGGCAGGCAATGGCTCTCTCATCCTTTACAAAGCAACTCGGAACAAGTCAGG
GAAGTATCGCTGTGCAGCCAGGAATAAGGTTGGCTACATCGAGAAACTCATCCTGTTAGAGATT
GGGCAGAAGCCAGTCATTCTGACATACGAACCAGGGATGGTGAAGAGCGTCAGTGGGGAACCGT
TATCACTGCATTGTGTGTCTGATGGGATCCCCAAGCCAAATGTCAAGTGGACTACACCGGGTGG
CCATGTAATCGACAGGCCTCAAGTGGATGGAAAATACATACTGCATGAAAATGGCACGCTGGTC
ATCAAAGCAACAACAGCTCACGACCAAGGAAATTATATCTGTAGGGCTCAAAACAGTGTTGGCC
AGGCAGTTATTAGCGTGTCAGTGATGGTTGTGGCCTACCCTCCCCGAATCATAAACTACCTACC
CAGGAACATGCTCAGGAGGACAGGGGAAGCCATGCAGCTCCACTGTGTGGCCTTGGGAATCCCC
AAGCCAAAAGTCACCTGGGAGACGCCAAGACACTCCCTGCTCTCAAAAGCAACAGCAAGAAAAC
CCCATAGAAGTGAGATGCTTCACCCACAAGGTACGCTGGTCATTCAGAATCTCCAAACCTCGGA
TTCCGGAGTCTATAAGTGCAGAGCTCAGAACCTACTTGGGACTGATTACGCAACAACTTACATC
CAGGTACTCTGACAGGAAGGGGGAGACTAAAATTCAACAGAAGTCCACATCCACAGGGTTTATT
TTTTGGAAGAAGTTTAATCAAAGGCAGCCATAGGCATGTAAATGAGTCTGAATACATTTACAGT
ATTAAATTTACAATGGACATGCGATGAGACTTGTAAATGAAAGCATTGTGAACTGAAACCGAGT
CTCTGTGGATCTCAAAGCAAACTCTTAACTTAAGGCACTTTGATTTTGCCAACAAATAATAACA
AACATTAAGAGAAAAAAATGATCCACTACGAAATAACAAACGGCTAATGCACCTGAATTCTCAG
TAAAAAGACCTTTCTCTCGCTAACAGTTGCCAGCTGCCTCGTGTCTGTTTCCTACCAATGTCAC
AAACATCGCACACAGGGTGAATGGAGTCAACGGGAAAGATTAAGTTTGCGGTCTGTGTAAATCT
CAATGTACAAATATTCTGTCACTGGTTTATAAACA

hide sequence

RefSeq Acc Id:

XM_039102264 ⟹ XP_038958192

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	145,725,868 - 145,754,636 (-)	NCBI
mRatBN7.2	2	143,575,710 - 143,604,833 (-)	NCBI

RefSeq Acc Id:

XM_039102265 ⟹ XP_038958193

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	145,725,868 - 145,754,850 (-)	NCBI
mRatBN7.2	2	143,575,710 - 143,605,044 (-)	NCBI

RefSeq Acc Id:

XM_039102266 ⟹ XP_038958194

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	145,725,868 - 145,754,850 (-)	NCBI
mRatBN7.2	2	143,575,710 - 143,605,044 (-)	NCBI

RefSeq Acc Id:

XM_039102267 ⟹ XP_038958195

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	145,725,868 - 145,754,850 (-)	NCBI
mRatBN7.2	2	143,575,710 - 143,605,044 (-)	NCBI

RefSeq Acc Id:

XM_039102268 ⟹ XP_038958196

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	145,725,868 - 145,745,878 (-)	NCBI
mRatBN7.2	2	143,575,710 - 143,596,697 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_942063	(Get FASTA)	NCBI Sequence Viewer
	XP_017446351	(Get FASTA)	NCBI Sequence Viewer
	XP_038958192	(Get FASTA)	NCBI Sequence Viewer
	XP_038958193	(Get FASTA)	NCBI Sequence Viewer
	XP_038958194	(Get FASTA)	NCBI Sequence Viewer
	XP_038958195	(Get FASTA)	NCBI Sequence Viewer
	XP_038958196	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAQ16157	(Get FASTA)	NCBI Sequence Viewer
	EDM14845	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000018629
	ENSRNOP00000103563
	ENSRNOP00000112186
GenBank Protein	Q6WRH9	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_942063 ⟸ NM_198768
- Peptide Label:	precursor
- UniProtKB:	Q6WRH9 (UniProtKB/Swiss-Prot), G3V7S1 (UniProtKB/TrEMBL), A6JVK7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQVRGREVSGLLISLTAVCLVVTPGSRACPRRCACYVPTEVHCTFRYLTSIPDGIPANVERINL GYNSLTRLTENDFDGLSKLELLMLHSNGIHRVSDKTFSGLQSLQVLKMSYNKVQIIRKDTFYGL GSLVRLHLDHNNIEFINPEAFYGLTSLRLVHLEGNRLTKLHPDTFVSLSYLQIFKTSFIKYLFL SDNFLTSLPKEMVSYMPNLESLYLHGNPWTCDCHLKWLSEWMQGNPDIIKCKKDRSSSSPQQCP LCMNPRISKGRPFAMVPSGAFLCTKPTIDPSLKSKSLVTQEDNGSASTSPQDFIEPFGSLSLNM TDLSGNKADMVCSIQKPSRTSPTAFTEENDYIMLNASFSTNLVCSVDYNHIQPVWQLLALYSDS PLILERKPQLTETPSLSSRYKQVALRPEDIFTSIEADVRADPFWFQQEKIVLQLNRTATTLSTL QIQFSTDAQIALPRAEMRAERLKWTMILMMNNPKLERTVLVGGTIALSCPGKGDPSPHLEWLLA DGSKVRAPYVSEDGRILIDKNGKLELQMADSFDAGLYHCISTNDADADVLTYRITVVEPYGEST HDSGVQHTVVTGETLDLPCLSTGVPDASISWILPGNTVFSQPSRDRQILNNGTLRILQVTPKDQ GHYQCVAANPSGADFSSFKVSVQKKGQRMVEHDREAGGSGLGEPNSSVSLKQPASLKLSASALT GSEAGKQVSGVHRKNKHRDLIHRRRGDSTLRRFREHRRQLPLSARRIDPQRWAALLEKAKKNSV PKKQENTTVKPVPLAVPLVELTDEEKDASGMIPPDEEFMVLKTKASGVPGRSPTADSGPVNHGF MTSIASGTEVSTVNPQTLQSEHLPDFKLFSVTNGTAVTKSMNPSIASKIEDTTNQNPIIIFPSV AEIRDSAQAGRASSQSAHPVTGGNMATYGHTNTYSSFTSKASTVLQPINPTESYGPQIPITGVS RPSSSDISSHTTADPSFSSHPSGSHTTASSLFHIPRNNNTGNFPLSRHLGRERTIWSRGRVKNP HRTPVLRRHRHRTVRPAIKGPANKNVSQVPATEYPGMCHTCPSAEGLTVATAALSVPSSSHSAL PKTNNVGVIAEESTTVVKKPLLLFKDKQNVDIEIITTTTKYSGGESNHVIPTEASMTSAPTSVS LGKSPVDNSGHLSMPGTIQTGKDSVETTPLPSPLSTPSIPTSTKFSKRKTPLHQIFVNNQKKEG MLKNPYQFGLQKNPAAKLPKIAPLLPTGQSSPSDSTTLLTSPPPALSTTMAATQNKGTEVVSGA RSLSAGKKQPFTNSSPVLPSTISKRSNTLNFLSTETPTVTSPTATASVIMSETQRTRSKEAKDQ IKGPRKNRNNANTTPRQVSGYSAYSALTTADTPLAFSHSPRQDDGGNVSAVAYHSTTSLLAITE LFEKYTQTLGNTTALETTLLSKSQESTTVKRASDTPPPLLSSGAPPVPTPSPPPFTKGVVTDSK VTSAFQMTSNRVVTIYESSRHNTDLQQPSAEASPNPEIITGTTDSPSNLFPSTSVPALRVDKPQ NSKWKPSPWPEHKYQLKSYSETIEKGKRPAVSMSPHLSLPEASTHASHWNTQKHAEKSVFDKKP GQNPTSKHLPYVSLPKTLLKKPRIIGGKAASFTVPANSDVFLPCEAVGDPLPIIHWTRVSSGLE ISQGTQKSRFHVLPNGTLSIQRVSIQDRGQYLCSAFNPLGVDHFHVSLSVVFYPARILDRHVKE ITVHFGSTVELKCRVEGMPRPTVSWILANQTVVSETAKGSRKVWVTPDGTLIIYNLSLYDRGFY KCVASNPSGQDSLLVKIQVITAPPVIIEQKRQAIVGVLGGSLKLPCTAKGTPQPSVHWVLYDGT ELKPLQLTHSRFFLYPNGTLYIRSIAPSVRGTYECIATSSSGSERRVVILTVEEGETIPRIETA SQKWTEVNLGEKLLLNCSATGDPKPRIIWRLPSKAVIDQWHRMGSRIHVYPNGSLVVGSVTEKD AGDYLCVARNKMGDDLVLMHVRLRLTPAKIEQKQYFKKQVLHGKDFQVDCKASGSPVPEVSWSL PDGTVLNNVAQADDSGYRTKRYTLFHNGTLYFNNVGMAEEGDYICSAQNTLGKDEMKVHLTVLT AIPRIRQSYKTTMRLRAGETAVLDCEVTGEPKPNVFWLLPSNNVISFSNDRFTFHANRTLSIHK VKPLDSGDYVCVAQNPSGDDTKTYKLDIVSKPPLINGLYANKTVIKATAIRHSKKYFDCRADGI PSSQVTWIMPGNIFLPAPYFGSRVTVHPNGTLEMRNIRLSDSADFTCVVRSEGGESVLVVQLEV LEMLRRPTFRNPFNEKVIAQAGKPVALNCSVDGNPPPEITWILPDGTQFANRPHNSPYLMAGNG SLILYKATRNKSGKYRCAARNKVGYIEKLILLEIGQKPVILTYEPGMVKSVSGEPLSLHCVSDG IPKPNVKWTTPGGHVIDRPQVDGKYILHENGTLVIKATTAHDQGNYICRAQNSVGQAVISVSVM VVAYPPRIINYLPRNMLRRTGEAMQLHCVALGIPKPKVTWETPRHSLLSKATARKPHRSEMLHP QGTLVIQNLQTSDSGVYKCRAQNLLGTDYATTYIQVL hide sequence

RefSeq Acc Id:	XP_017446351 ⟸ XM_017590862
- Peptide Label:	isoform X2
- UniProtKB:	Q6WRH9 (UniProtKB/Swiss-Prot), G3V7S1 (UniProtKB/TrEMBL), A6JVK7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQVRGREVSGLLISLTAVCLVVTPGSRACPRRCACYVPTEVHCTFRYLTSIPDGIPANVERINL GYNSLTRLTENDFDGLSKLELLMLHSNGIHRVSDKTFSGLQSLQVLKISYNKVQIVRKDTFYGL GSLVRLHLDHNNIEFINPEAFYGLTSLRLVHLEGNRLTKLHPDTFVSLSYLQIFKTSFIKYLFL SDNFLTSLPKEMVSYMPNLESLYLHGNPWTCDCHLKWLSEWMQGNPDIIKCKKDRSSSSPQQCP LCMNPRISKGRPFAMVPSGAFLCTKPTIDPSLKSKSLVTQEDNGSASTSPQDFIEPFGSLSLNM TDLSGNKADMVCSIQKPSRTSPTAFTEENDYIMLNASFSTNLVCSVDYNHIQPVWQLLALYSDS PLILERKPQLTETPSLSSRYKQVALRPEDIFTSIEADVRADPFWFQQEKIVLQLNRTATTLSTL QIQFSTDAQIALPRAEMRAERLKWTMILMMNNPKLERTVLVGGTIALSCPGKGDPSPHLEWLLA DGSKVRAPYVSEDGRILIDKNGKLELQMADSFDAGLYHCISTNDADADVLTYRITVVEPYGEST HDSGVQHTVVTGETLDLPCLSTGVPDASISWILPGNTVFSQPSRDRQILNNGTLRILQVTPKDQ GHYQCVAANPSGADFSSFKVSVQKKGQRMVEHDREAGGSGLGEPNSSVSLKQPASLKLSASALT GSEAGKQVSGVHRKNKHRDLIHRRRGDSTLRRFREHRRQLPLSARRIDPQRWAALLEKAKKNSV PKKQENTTVKPVPLAVPLVELTDEEKDASGMIPPDEEFMVLKTKASGVPGRSPTADSGPVNHGF MTSIASGTEVSTVNPQTLQSEHLPDFKLFSVTNGTAVTKSMNPSIASKIEDTTNQNPIIIFPSV AEIRDSAQAGRASSQSAHPVTGGNMATYGHTNTYSSFTSKASTVLQPINPTESYGPQIPITGVS RPSSSDISSHTTADPSFSSHPSGSHTTASSLFHIPRNNNTGNFPLSRHLGRERTIWSRGRVKNP HRTPVLRRHRHRTVRPAIKGPANKNVSQVPATEYPGMCHTCPSAEGLTVATAALSVPSSSHSAL PKANNVGVIAEESTTVVKKPLLLFKDKQNVDIEIITTTTKYSGGESNHVIPTEASMTSAPTSVS LGKSPVDNTGHLSMPGTIQTGKDSVETTPLPSPLSTPSIPTSTKFSKRKTPLHQIFVNNQKKEG MLKNPYQFGLQKNPAAKLPKIAPLLPTGQSSPSDSTTLLTSPPPALSTTMAATQNKGTEVVSGA RSLSAGKKQPFTNSSPVLPSTISKRSNTLNFLSTETPTVTSPTATASVIMSETQRTRSKEAKDQ IKGPRKNRNNASTTPRQVSGYSAYSALTTADTPLAFSHSPRQDDGGNVSAVAYHSTTSLLAITE LFEKYTQTLGNTTALETMLLSKSQESTTVKRASDTPPPLLSSGAPPVPTPSPPPFTKGVVTDSK VTSAFQMTSNRVVTIYESSRHNTDLQQPSAEASPNPEIITGTTDSPSNLFPSTSVPALRVDKPQ NSKWKPSPWPEHKYQLKSYSETIEKGKRPAVSMSPHLSLPEASTHASHWNTQKHAEKSVFDKKP AQNPTSKHLPYVSLPKTLLKKPRIIGGKAASFTVPANSDVFLPCEAVGDPLPIIHWTRVSSGLE ISQGTQKSRFHVLPNGTLSIQRVSIQDRGQYLCSASNPLGVDHLHVSLSVVSYPARILDRHVKE ITVHSGSTVELKCRVEGMPRPTVSWILANQTVVSETAKGSRKVWVTPDGTLIIYNLSLYDRGFY KCVASNPSGQDSLLVKIQVITAPPVIIEQKRQAIVGVLGGSLKLPCTAKGTPQPSVHWVLYDGT ELKPLQLTHSRFFLYPNGTLYIRSIAPSVRGTYECIATSSSGSERRVVILTVEEGETIPRIETA SQKWTEVNLGEKLLLNCSATGDPKPRIIWRLPSKAVIDQWHRMGSRIHVYPNGSLVVGSVTEKD AGDYLCVARNKMGDDLVLMHVRLRLTPAKIEQKQYFKKQVLHGKDFQVDCKASGSPVPEVSWSL PDGTVLNNVAQADDSGYRTKRYTLFHNGTLYFNNVGMAEEGDYICSAQNTLGKDEMKVHLTVLT AIPRIRQSYKTTMRLRAGDTAVLDCEVTGEPKPNVFWLLPSNNVISFSNDRFTFHANRTLSIHK VKPLDSGDYVCVAQNPSGDDTKTYKLDIVSKPPLINGLYANKTVIKATAIRHSKKYFDCRADGI PSSQVTWIMPGNIFLPAPYFGSRVTVHPNGTLEMRNIRLSDSADFTCVVRSEGGESVLVVQLEV LEMLRRPTFRNPFNEKVIAQAGKPVALNCSVDGNPPPEITWILPDGTQFANRPHNSPYLMAGNG SLILYKATRNKSGKYRCAARNKVGYIEKLILLEIGQKPVILTYEPGMVKSVSGEPLSLHCVSDG IPKPNVKWTTPGGHVIDRPQVDGKYILHENGTLVIKATTAHDQGNYICRAQNSVGQAVISVSVM VVAYPPRIINYLPRNMLRRTGEAMQLHCVALGIPKPKVTWETPRHSLLSKATARKPHRSEMLHP QGTLVIQNLQTSDSGVYKCRAQNLLGTDYATTYIQVL hide sequence

Ensembl Acc Id:

ENSRNOP00000018629 ⟸ ENSRNOT00000018628

Ensembl Acc Id:

ENSRNOP00000069220 ⟸ ENSRNOT00000086186

RefSeq Acc Id:	XP_038958195 ⟸ XM_039102267
- Peptide Label:	isoform X1
- UniProtKB:	Q6WRH9 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038958194 ⟸ XM_039102266
- Peptide Label:	isoform X1
- UniProtKB:	Q6WRH9 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038958193 ⟸ XM_039102265
- Peptide Label:	isoform X1
- UniProtKB:	Q6WRH9 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038958192 ⟸ XM_039102264
- Peptide Label:	isoform X1
- UniProtKB:	Q6WRH9 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038958196 ⟸ XM_039102268
- Peptide Label:	isoform X3
- UniProtKB:	Q6WRH9 (UniProtKB/Swiss-Prot)

Ensembl Acc Id:

ENSRNOP00000103563 ⟸ ENSRNOT00000152418

Ensembl Acc Id:

ENSRNOP00000112059 ⟸ ENSRNOT00000166530

Ensembl Acc Id:

ENSRNOP00000112186 ⟸ ENSRNOT00000136047

Protein Domains

Ig-like Ig-like C2-type LRRCT LRRNT

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6WRH9-F1-model_v2	AlphaFold	Q6WRH9	1-2597	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691350

Promoter ID:

EPDNEW_R1874

Type:

initiation region

Name:

Igsf10_1

Description:

immunoglobulin superfamily, member 10

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	149,564,087 - 149,564,147	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:735030	AgrOrtholog
BioCyc Gene	G2FUF-52984	BioCyc
Ensembl Genes	ENSRNOG00000013917	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000018628	ENTREZGENE
	ENSRNOT00000136047	ENTREZGENE
	ENSRNOT00000152418	ENTREZGENE
Gene3D-CATH	2.60.40.10	UniProtKB/Swiss-Prot
	3.80.10.10	UniProtKB/Swiss-Prot
InterPro	Cys-rich_flank_reg_C	UniProtKB/Swiss-Prot
	Ig-like_dom	UniProtKB/Swiss-Prot
	Ig-like_dom_sf	UniProtKB/Swiss-Prot
	Ig-like_fold	UniProtKB/Swiss-Prot
	Ig_I-set	UniProtKB/Swiss-Prot
	Ig_sub	UniProtKB/Swiss-Prot
	Ig_sub2	UniProtKB/Swiss-Prot
	Ig_V-set	UniProtKB/Swiss-Prot
	Leu-rich_rpt	UniProtKB/Swiss-Prot
	Leu-rich_rpt_typical-subtyp	UniProtKB/Swiss-Prot
	LRFN	UniProtKB/Swiss-Prot
	LRR_dom_sf	UniProtKB/Swiss-Prot
	LRRNT	UniProtKB/Swiss-Prot
KEGG Report	rno:310448	UniProtKB/Swiss-Prot
NCBI Gene	310448	ENTREZGENE
PANTHER	KEKKON 5, ISOFORM A	UniProtKB/Swiss-Prot
	SYNAPTIC ADHESION-LIKE MOLECULE SALM	UniProtKB/Swiss-Prot
Pfam	I-set	UniProtKB/Swiss-Prot
	Ig_3	UniProtKB/Swiss-Prot
	LRR_8	UniProtKB/Swiss-Prot
PhenoGen	Igsf10	PhenoGen
PROSITE	IG_LIKE	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000013917	RatGTEx
SMART	IGc2	UniProtKB/Swiss-Prot
	IGv	UniProtKB/Swiss-Prot
	LRR_TYP	UniProtKB/Swiss-Prot
	LRRCT	UniProtKB/Swiss-Prot
	LRRNT	UniProtKB/Swiss-Prot
	SM00409	UniProtKB/Swiss-Prot
Superfamily-SCOP	L domain-like	UniProtKB/Swiss-Prot
	SSF48726	UniProtKB/Swiss-Prot
UniProt	A0ABK0LNM2_RAT	UniProtKB/TrEMBL
	A0ABK0M2F0_RAT	UniProtKB/TrEMBL
	A0ABK0M8V6_RAT	UniProtKB/TrEMBL
	A6JVK7	ENTREZGENE, UniProtKB/TrEMBL
	G3V7S1	ENTREZGENE, UniProtKB/TrEMBL
	IGS10_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-11-17	Igsf10	immunoglobulin superfamily, member 10			Name updated	1299863	APPROVED
2004-09-10	Igsf10	bone specific CMF608	LOC310448		Symbol and Name updated	1299863	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_domains	contains an N-terminal signal peptide, six leucine-rich repeats, and 12 immunoglobulin-like repeats, 10 of which are clustered in the C-terminus	1302504
gene_expression	highest expression in mesenchymal osteochondroprogenitors with fibroblast-like morphology found in the perichondral fibrous ring of La Croix, periosteum, endosteum of normal bone as well as in the activated periosteum and early fibrous callus generated postfracture	1302504
gene_regulation	is up-regulated in response to mechanical force and appears to be down-regulated prior to terminal differentiation	1302504

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar