Gkn1 (gastrokine 1) - Rat Genome Database

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Gene: Gkn1 (gastrokine 1) Rattus norvegicus
Analyze
Symbol: Gkn1
Name: gastrokine 1
RGD ID: 735014
Description: Predicted to enable growth factor activity. Predicted to be involved in regulation of cell population proliferation. Predicted to act upstream of or within positive regulation of cell population proliferation. Predicted to be located in extracellular region and secretory granule. Predicted to be active in extracellular space. Orthologous to human GKN1 (gastrokine 1); INTERACTS WITH 2,2',5,5'-tetrachlorobiphenyl; beta-naphthoflavone; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Amp18; Ca11; Fov; foveolin; foveolin precursor; gastrokine-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84121,347,417 - 121,352,705 (-)NCBIGRCr8
mRatBN7.24119,790,101 - 119,795,389 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4119,790,101 - 119,795,389 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4125,261,663 - 125,267,030 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04121,036,416 - 121,041,783 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04119,660,661 - 119,666,028 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04119,143,070 - 119,148,358 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4119,143,070 - 119,148,358 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04183,711,680 - 183,717,243 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44121,496,151 - 121,501,439 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14121,740,631 - 121,745,920 (-)NCBI
Celera4108,760,377 - 108,765,665 (-)NCBICelera
Cytogenetic Map4q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gkn1Ratadenocarcinoma  ISOGKN1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:15378696
Gkn1Ratovarian cyst  ISOGKN1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21239663
Gkn1RatStomach Neoplasms  ISOGKN1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:15378696

1 to 20 of 32 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gkn1Rat2,2',5,5'-tetrachlorobiphenyl increases expressionEXP 64804642 more ...CTDPMID:23829299
Gkn1Rat4,4'-sulfonyldiphenol decreases methylationISOGkn1 (Mus musculus)6480464bisphenol S results in decreased methylation of GKN1 promoterCTDPMID:33297965
Gkn1Ratacetylsalicylic acid affects expressionISOGKN1 (Homo sapiens)6480464Aspirin affects the expression of GKN1 mRNA and Aspirin affects the expression of GKN1 proteinCTDPMID:19145733
Gkn1Ratarsenous acid multiple interactionsISOGKN1 (Homo sapiens)6480464Arsenic Trioxide inhibits the reaction [4-aminophenylarsenoxide binds to GKN1 protein]CTDPMID:26598702
Gkn1Ratbenzo[a]pyrene decreases expressionISOGkn1 (Mus musculus)6480464Benzo(a)pyrene results in decreased expression of GKN1 mRNACTDPMID:20127859
Gkn1Ratbeta-naphthoflavone multiple interactionsEXP 6480464[Diethylnitrosamine co-treated with beta-Naphthoflavone] results in increased expression of GKN1 mRNACTDPMID:18164116
Gkn1Ratbisphenol A decreases expressionEXP 6480464bisphenol A results in decreased expression of GKN1 mRNACTDPMID:25181051
Gkn1Ratbisphenol A multiple interactionsISOGKN1 (Homo sapiens)6480464[bisphenol A co-treated with Fulvestrant] results in decreased methylation of GKN1 geneCTDPMID:31601247
Gkn1Ratbutanal increases expressionISOGKN1 (Homo sapiens)6480464butyraldehyde results in increased expression of GKN1 mRNACTDPMID:26079696
Gkn1Ratcadmium atom multiple interactionsISOGKN1 (Homo sapiens)6480464[Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of GKN1 mRNACTDPMID:35301059
Gkn1Ratcadmium atom multiple interactionsISOGkn1 (Mus musculus)6480464[Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of GKN1 mRNACTDPMID:37325564
Gkn1Ratcadmium dichloride multiple interactionsISOGKN1 (Homo sapiens)6480464[Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of GKN1 mRNACTDPMID:35301059
Gkn1Ratcadmium dichloride multiple interactionsISOGkn1 (Mus musculus)6480464[Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of GKN1 mRNACTDPMID:37325564
Gkn1Ratcisplatin increases expressionISOGKN1 (Homo sapiens)6480464Cisplatin results in increased expression of GKN1 mRNACTDPMID:27392435
Gkn1Ratdiarsenic trioxide multiple interactionsISOGKN1 (Homo sapiens)6480464Arsenic Trioxide inhibits the reaction [4-aminophenylarsenoxide binds to GKN1 protein]CTDPMID:26598702
Gkn1Ratdiuron increases expressionEXP 6480464Diuron results in increased expression of GKN1 mRNACTDPMID:21551480
Gkn1Ratfolic acid decreases expressionISOGkn1 (Mus musculus)6480464Folic Acid results in decreased expression of GKN1 mRNACTDPMID:25629700
Gkn1Ratfulvestrant multiple interactionsISOGKN1 (Homo sapiens)6480464[bisphenol A co-treated with Fulvestrant] results in decreased methylation of GKN1 geneCTDPMID:31601247
Gkn1Ratglyphosate increases methylationEXP 6480464Glyphosate results in increased methylation of GKN1 geneCTDPMID:31011160
Gkn1Ratirinotecan affects expressionEXP 6480464Irinotecan affects the expression of GKN1 mRNACTDPMID:20097248

1 to 20 of 32 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gkn1Ratpositive regulation of cell population proliferation acts_upstream_of_or_withinISOGkn1 (Mus musculus)1624291 PMID:12851218RGDPMID:12851218
Gkn1Ratregulation of cell population proliferation involved_inIBAMGI:1913533 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Gkn1Ratsignal transduction involved_inIEAGO:00080831600115GO_REF:0000108GOCGO_REF:0000108

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gkn1Ratextracellular region located_inISOGKN1 (Homo sapiens)1624291 PMID:15221938RGDPMID:15221938
Gkn1Ratextracellular region located_inIEAUniProtKB:Q9NS71 and ensembl:ENSP000003671721600115GO_REF:0000107EnsemblGO_REF:0000107
Gkn1Ratextracellular space is_active_inIBAMGI:1916138 and PANTHER:PTN0010468151600115GO_REF:0000033GO_CentralGO_REF:0000033
Gkn1Ratsecretory granule located_inISOGkn1 (Mus musculus)1624291 PMID:12851218RGDPMID:12851218

Molecular Function

  


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. A novel mitogenic protein that is highly expressed in cells of the gastric antrum mucosa. Martin TE, etal., Am J Physiol Gastrointest Liver Physiol 2003 Aug;285(2):G332-43.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:15221938  



Gkn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84121,347,417 - 121,352,705 (-)NCBIGRCr8
mRatBN7.24119,790,101 - 119,795,389 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4119,790,101 - 119,795,389 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4125,261,663 - 125,267,030 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04121,036,416 - 121,041,783 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04119,660,661 - 119,666,028 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04119,143,070 - 119,148,358 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4119,143,070 - 119,148,358 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04183,711,680 - 183,717,243 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44121,496,151 - 121,501,439 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14121,740,631 - 121,745,920 (-)NCBI
Celera4108,760,377 - 108,765,665 (-)NCBICelera
Cytogenetic Map4q34NCBI
GKN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38268,974,636 - 68,980,976 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl268,974,573 - 68,980,980 (+)EnsemblGRCh38hg38GRCh38
GRCh37269,201,768 - 69,208,108 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36269,055,209 - 69,061,616 (+)NCBINCBI36Build 36hg18NCBI36
Build 34269,113,417 - 69,119,763NCBI
Celera269,052,436 - 69,058,843 (+)NCBICelera
Cytogenetic Map2p13.3NCBI
HuRef268,937,927 - 68,944,334 (+)NCBIHuRef
CHM1_1269,131,023 - 69,137,429 (+)NCBICHM1_1
T2T-CHM13v2.0268,987,051 - 68,993,391 (+)NCBIT2T-CHM13v2.0
Gkn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39687,322,635 - 87,327,897 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl687,322,632 - 87,327,924 (-)EnsemblGRCm39 Ensembl
GRCm38687,345,653 - 87,350,915 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl687,345,650 - 87,350,942 (-)EnsemblGRCm38mm10GRCm38
MGSCv37687,295,647 - 87,300,909 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36687,311,287 - 87,316,549 (-)NCBIMGSCv36mm8
Celera689,284,666 - 89,289,929 (-)NCBICelera
Cytogenetic Map6D1NCBI
cM Map637.96NCBI
Gkn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542416,046,662 - 16,049,687 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542416,046,662 - 16,051,235 (-)NCBIChiLan1.0ChiLan1.0
GKN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21257,434,605 - 57,478,862 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A57,438,553 - 57,444,940 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A69,015,692 - 69,022,155 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A70,137,447 - 70,143,918 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A70,137,447 - 70,144,040 (+)Ensemblpanpan1.1panPan2
GKN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11067,788,329 - 67,793,445 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1067,788,110 - 67,793,589 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1067,677,625 - 67,682,902 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01068,810,000 - 68,815,276 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1068,809,829 - 68,815,215 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11068,491,450 - 68,496,462 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01068,792,706 - 68,797,978 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01069,087,881 - 69,092,894 (+)NCBIUU_Cfam_GSD_1.0
Gkn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629215,306,926 - 15,312,244 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649113,259,073 - 13,264,213 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649113,259,073 - 13,264,213 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GKN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl373,420,359 - 73,426,592 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1373,420,359 - 73,426,472 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2376,861,574 - 76,867,686 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GKN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11438,145,076 - 38,291,187 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1438,145,559 - 38,152,126 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604573,838,684 - 73,847,183 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

.

.
Variants in Gkn1
27 total Variants

Predicted Target Of
Summary Value
Count of predictions:21
Count of miRNA genes:20
Interacting mature miRNAs:21
Transcripts:ENSRNOT00000012218
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 49 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)495174120140174120Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)490850165135850165Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4116179486151161268Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4106649412151649412Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4109827074154827074Rat

1 to 10 of 49 rows



alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
6 2 2 29 21 29 8 21 8 3 60 27 22 17 16 21



Ensembl Acc Id: ENSRNOT00000012218   ⟹   ENSRNOP00000012218
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4119,790,101 - 119,795,389 (-)Ensembl
Rnor_6.0 Ensembl4119,143,070 - 119,148,358 (-)Ensembl
RefSeq Acc Id: NM_198972   ⟹   NP_945323
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84121,347,417 - 121,352,705 (-)NCBI
mRatBN7.24119,790,101 - 119,795,389 (-)NCBI
Rnor_6.04119,143,070 - 119,148,358 (-)NCBI
Rnor_5.04183,711,680 - 183,717,243 (-)NCBI
RGSC_v3.44121,496,151 - 121,501,439 (-)RGD
Celera4108,760,377 - 108,765,665 (-)RGD
Sequence:
Protein RefSeqs NP_945323 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAR21208 (Get FASTA)   NCBI Sequence Viewer  
  DAA02295 (Get FASTA)   NCBI Sequence Viewer  
  EDL91271 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000012218
  ENSRNOP00000012218.5
RefSeq Acc Id: NP_945323   ⟸   NM_198972
- Peptide Label: precursor
- UniProtKB: Q6SJV7 (UniProtKB/TrEMBL),   F7ETE6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000012218   ⟸   ENSRNOT00000012218
BRICHOS

Name Modeler Protein Id AA Range Protein Structure
AF-Q6SJV7-F1-model_v2 AlphaFold Q6SJV7 1-183 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13693220
Promoter ID:EPDNEW_R3744
Type:multiple initiation site
Name:Gkn1_1
Description:gastrokine 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04119,148,358 - 119,148,418EPDNEW


1 to 17 of 17 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-43865 BioCyc
Ensembl Genes ENSRNOG00000008838 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000012218 ENTREZGENE
  ENSRNOT00000012218.6 UniProtKB/TrEMBL
Gene3D-CATH 3.30.390.150 UniProtKB/TrEMBL
InterPro BRICHOS UniProtKB/TrEMBL
  Gastrokine UniProtKB/TrEMBL
KEGG Report rno:297418 UniProtKB/TrEMBL
NCBI Gene 297418 ENTREZGENE
PANTHER GASTROKINE 1 UniProtKB/TrEMBL
Pfam BRICHOS UniProtKB/TrEMBL
PhenoGen Gkn1 PhenoGen
PROSITE BRICHOS UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008838 RatGTEx
SMART BRICHOS UniProtKB/TrEMBL
UniProt F7ETE6 ENTREZGENE, UniProtKB/TrEMBL
  Q6SJV7 ENTREZGENE, UniProtKB/TrEMBL
1 to 17 of 17 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Gkn1  gastrokine 1    foveolin precursor  Name updated 1299863 APPROVED
2004-09-10 Gkn1  foveolin precursor  Fov    Symbol and Name updated 1299863 APPROVED