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Gene: Lhfpl1 (LHFPL tetraspan subfamily member 1) Rattus norvegicus

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Symbol:

Lhfpl1

Name:

LHFPL tetraspan subfamily member 1

RGD ID:

727927

Description:

Predicted to be active in membrane. Orthologous to human LHFPL1 (LHFPL tetraspan subfamily member 1); INTERACTS WITH 17beta-estradiol; acrylamide; ammonium chloride.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Lhfp; lipoma HMGIC fusion partner; lipoma HMGIC fusion partner-like 1; lipoma HMGIC fusion partner-like 1 protein; LOC300286

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LHFPL1 (LHFPL tetraspan subfamily member 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Lhfpl1 (lipoma HMGIC fusion partner-like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Lhfpl1 (LHFPL tetraspan subfamily member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LHFPL1 (LHFPL tetraspan subfamily member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LHFPL1 (LHFPL tetraspan subfamily member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Lhfpl1 (LHFPL tetraspan subfamily member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LHFPL1 (LHFPL tetraspan subfamily member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LHFPL1 (LHFPL tetraspan subfamily member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Lhfpl1 (LHFPL tetraspan subfamily member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Lhfpl1 (LHFPL tetraspan subfamily member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ZNF280B (zinc finger protein 280B)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	LHFPL1 (LHFPL tetraspan subfamily member 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Lhfpl1 (lipoma HMGIC fusion partner-like 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	lhfpl1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	lhfpl1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	113,612,200 - 113,670,060 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	113,612,200 - 113,670,060 (-)	Ensembl				GRCr8
mRatBN7.2	X	108,815,596 - 108,873,460 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	108,815,596 - 108,873,460 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	110,955,547 - 111,013,433 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	114,455,352 - 114,513,242 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	112,012,009 - 112,069,901 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	116,578,521 - 116,638,648 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	116,578,527 - 116,638,508 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	116,716,941 - 116,777,168 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	33,160,888 - 33,220,843 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	108,198,021 - 108,255,504 (-)	NCBI		Celera
RGSC_v3.1	X	33,214,356 - 33,274,312 (+)	NCBI
Cytogenetic Map	X	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

ammonium chloride (EXP)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (ISO)

CGP 52608 (ISO)

silicon dioxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

membrane (IBA,IEA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	NCBI rat LocusLink and RefSeq merged data October 15, 2003	NCBI rat LocusLink and RefSeq merged data October 15, 2003
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Lhfpl1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	113,612,200 - 113,670,060 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	113,612,200 - 113,670,060 (-)	Ensembl				GRCr8
mRatBN7.2	X	108,815,596 - 108,873,460 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	108,815,596 - 108,873,460 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	110,955,547 - 111,013,433 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	114,455,352 - 114,513,242 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	112,012,009 - 112,069,901 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	116,578,521 - 116,638,648 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	116,578,527 - 116,638,508 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	116,716,941 - 116,777,168 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	33,160,888 - 33,220,843 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	108,198,021 - 108,255,504 (-)	NCBI		Celera
RGSC_v3.1	X	33,214,356 - 33,274,312 (+)	NCBI
Cytogenetic Map	X	q34	NCBI

LHFPL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	112,630,648 - 112,679,938 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	112,625,372 - 112,680,180 (-)	Ensembl			hg38	GRCh38
GRCh37	X	111,873,876 - 111,923,166 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	111,760,535 - 111,810,031 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	X	112,359,143 - 112,408,638 (-)	NCBI		Celera
Cytogenetic Map	X	q23	NCBI
HuRef	X	101,497,232 - 101,546,389 (-)	NCBI		HuRef
CHM1_1	X	111,785,057 - 111,834,527 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	111,081,595 - 111,130,884 (-)	NCBI		T2T-CHM13v2.0

Lhfpl1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	144,073,355 - 144,155,388 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	144,073,355 - 144,132,085 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	X	145,290,359 - 145,372,392 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	145,290,359 - 145,349,089 (-)	Ensembl			mm10	GRCm38
MGSCv37	X	141,724,902 - 141,783,437 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	X	140,536,727 - 140,595,262 (-)	NCBI		MGSCv36	mm8
Celera	X	129,239,006 - 129,295,143 (-)	NCBI		Celera
Cytogenetic Map	X	F2	NCBI
cM Map	X	66.54	NCBI

Lhfpl1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955490	3,156,323 - 3,216,037 (+)	Ensembl
ChiLan1.0	NW_004955490	3,156,323 - 3,215,925 (+)	NCBI	ChiLan1.0	ChiLan1.0

LHFPL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	112,116,907 - 112,173,064 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	112,120,514 - 112,176,672 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	101,739,343 - 101,797,855 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	112,202,054 - 112,254,096 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	112,202,054 - 112,254,096 (-)	Ensembl			panPan2	panpan1.1

LHFPL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	85,533,812 - 85,648,773 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	85,526,179 - 85,648,890 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	71,707,373 - 71,761,895 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	87,289,714 - 87,344,271 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	87,289,688 - 87,344,385 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	84,753,299 - 84,807,911 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	86,422,120 - 86,475,979 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	86,260,858 - 86,306,455 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Lhfpl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	84,862,211 - 84,912,018 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936499	2,745,825 - 2,795,721 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936499	2,745,825 - 2,795,691 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LHFPL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	92,422,918 - 92,481,761 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	X	92,422,913 - 92,542,291 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	106,788,151 - 106,907,178 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LHFPL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	100,225,777 - 100,405,628 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	100,355,574 - 100,405,518 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666065	25,696,554 - 25,758,776 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lhfpl1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624803	2,725,695 - 2,785,166 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624803	2,725,695 - 2,785,183 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Lhfpl1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	98,886,732 - 98,928,894 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Lhfpl1
214 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	82
Count of miRNA genes:	67
Interacting mature miRNAs:	75
Transcripts:	ENSRNOT00000030400
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1598872	Memor14	Memory QTL 14	4.5		exploratory behavior trait (VT:0010471)	difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	97528096	142528096	Rat
738025	Stresp3	Stress response QTL 3	4.61	0.0066	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	105359969	157758123	Rat
61430	Cia18	Collagen induced arthritis QTL 18	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	80434318	125434318	Rat
738029	Stresp2	Stress response QTL 2	3.4	0.0004	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	92979612	117740458	Rat
61431	Cia19	Collagen induced arthritis QTL 19	4.4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	105468858	125434318	Rat
738035	Stresp1	Stress response QTL 1	4.96	0.000011	stress-related behavior trait (VT:0010451)	defensive burying - coping	X	45182909	117740458	Rat
2302047	Pia34	Pristane induced arthritis QTL 34	5.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	19	96916163	141916163	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	11	65	129	57	56	25	16	25	6	231	110	6	103	72	88	31	10	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_181085	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY253667	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474047	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000030400 ⟹ ENSRNOP00000037132

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	113,612,200 - 113,670,060 (-)	Ensembl
mRatBN7.2 Ensembl	X	108,815,596 - 108,873,460 (-)	Ensembl
Rnor_6.0 Ensembl	X	116,578,527 - 116,638,508 (-)	Ensembl

RefSeq Acc Id:

NM_181085 ⟹ NP_851599

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	113,612,200 - 113,670,060 (-)	NCBI
mRatBN7.2	X	108,815,596 - 108,873,460 (-)	NCBI
Rnor_6.0	X	116,579,571 - 116,638,493 (-)	NCBI
Rnor_5.0	X	116,716,941 - 116,777,168 (-)	NCBI
RGSC_v3.4	X	33,160,888 - 33,220,843 (+)	RGD
Celera	X	108,198,021 - 108,255,504 (-)	RGD

Sequence:

show sequence

AAAGGTAAAGCAAGGTTTTCAGGCATCACTGCAAAGAGCAACTGGGAATCCCATCCCTGTCTGA
CAAGCTGTGAGAAGTTCTTATTTTTTCTCTCTCTTCTCAAATCTGAACCAGGCGAAAGGGAACA
AGTCAATCAGCCTTCGTGGTTAGAAGCCTAGCAACTATAGAACTCTGAACTAGGCAGAAGTAAA
GGATGACGGAAAGCAATAGCCCACAGAGACCCAAATGACATTTCAGAGAATGAGCTCTTCAAGA
AGCAAGAGCCATACAGCACACCTGTGAGTTCCAGGACCGGCCAACCAGATGAAAACAGCCCAGT
GGAGCCTACATCGTAACTTGTTTCTTGCTGCTGTGAACCATCTCATTTCCCCATCCTTGCACAG
AAACCTGAGACCATGAGGAGCAGCCTTACTCTGGTAGGCACCTTCTGGGCCTTCCTGTCCCTAG
TTACTGCTGTGGCCAGTTCTACCAGTTACTTCCTCCCTTACTGGCTGTTTGGATCACAGCTCGG
AAAGCCAGTATCGTTCAGCACGTTCAGGAGATGCAACTACCCTGTGCGGGGAGACGGGCACAAT
CTGATCATGGTGGAAGAATGTGGACGCTATGCCAGCTTCGCCGCCATACCAAGCCTGGCGTGGC
AGATGTGCACGGTGGTGACAGGTGCTGGCTGTGCTCTGTTGCTCCTGGTGGCATTGGCTGCTGT
CCTAGGATGCTGCATGGAAGAACTCATCTCTAGAATGATGGGGCGTTGCATGGGAGCTGCACAG
TTTGTAGGAGGGCTGCTGATAAGCTCAGGCTGCGCATTATATCCTTTAGGCTGGAACAGCCCAG
AGGTAATGCAGACGTGTGGGAATGTCTCCAATCAATTTCAGTTAGGAACCTGTAGACTTGGCTG
GGCCTATTACTGTGCTGGTGGCGGAGCTGCTGCAGCCATGTTGATCTGCACCTGGCTCTCTTGC
TTTGCTGGAAGAAATCCCAAGCCAGTTATGTTGGTGGAGAACATCATGAGGAATACCAATTCTT
ATGCCATGGAGCTGGATCACTGCCTCAAACCTTAAGCTTTGAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_851599	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAP14356	(Get FASTA)	NCBI Sequence Viewer
	EDL85180	(Get FASTA)	NCBI Sequence Viewer
	EDL85181	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000037132
	ENSRNOP00000037132.1
GenBank Protein	Q80WE5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_851599 ⟸ NM_181085
- Peptide Label:	precursor
- UniProtKB:	Q80WE5 (UniProtKB/Swiss-Prot), A6KG99 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRSSLTLVGTFWAFLSLVTAVASSTSYFLPYWLFGSQLGKPVSFSTFRRCNYPVRGDGHNLIMV EECGRYASFAAIPSLAWQMCTVVTGAGCALLLLVALAAVLGCCMEELISRMMGRCMGAAQFVGG LLISSGCALYPLGWNSPEVMQTCGNVSNQFQLGTCRLGWAYYCAGGGAAAAMLICTWLSCFAGR NPKPVMLVENIMRNTNSYAMELDHCLKP hide sequence

Ensembl Acc Id:

ENSRNOP00000037132 ⟸ ENSRNOT00000030400

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q80WE5-F1-model_v2	AlphaFold	Q80WE5	1-220	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:727927	AgrOrtholog
BioCyc Gene	G2FUF-1472	BioCyc
Ensembl Genes	ENSRNOG00000027601	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000030400	ENTREZGENE
	ENSRNOT00000030400.3	UniProtKB/Swiss-Prot
InterPro	LHFPL	UniProtKB/Swiss-Prot
KEGG Report	rno:300286	UniProtKB/Swiss-Prot
NCBI Gene	300286	ENTREZGENE
PANTHER	LHFPL TETRASPAN SUBFAMILY MEMBER 1 PROTEIN	UniProtKB/Swiss-Prot
	PTHR12489	UniProtKB/Swiss-Prot
Pfam	L_HMGIC_fpl	UniProtKB/Swiss-Prot
PhenoGen	Lhfpl1	PhenoGen
RatGTEx	ENSRNOG00000027601	RatGTEx
UniProt	A6KG99	ENTREZGENE, UniProtKB/TrEMBL
	LHPL1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-07-05	Lhfpl1	LHFPL tetraspan subfamily member 1	Lhfpl1	lipoma HMGIC fusion partner-like 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2007-09-18	Lhfpl1	lipoma HMGIC fusion partner-like 1	Lhfp	lipoma HMGIC fusion partner	Symbol and Name updated to reflect Human and Mouse nomenclature	1299863	APPROVED
2004-02-11	Lhfp	A kinase (PRKA) anchor protein 13	LOC300286	lipoma HMGIC fusion partner	Symbol updated to reflect Human and Mouse nomenclature	625702	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
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InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

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MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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