LOC257642 (rRNA promoter binding protein) - Rat Genome Database

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Gene: LOC257642 (rRNA promoter binding protein) Rattus norvegicus
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Symbol: LOC257642
Name: rRNA promoter binding protein
RGD ID: 727924
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity; double-stranded DNA binding; general transcription initiation factor binding; INVOLVED IN rRNA transcription; INTERACTS WITH Cuprizon
Type: protein-coding
RefSeq Status: WITHDRAWN
Previously known as: hypothetical protein LOC503325; ribin
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
UTH_Rnor_SHR_UtxPNT010000335.11 - 378 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0314,167,113 - 14,167,501 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0PNS010001970.124,509 - 24,837 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0630,638,801 - 30,639,289 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0638,855,602 - 38,855,871 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.1799,349,362 - 99,349,557 (+)NCBI
Cytogenetic Map6q14NCBI



Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Cuprizon  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Ribin, a protein encoded by a message complementary to rRNA, modulates ribosomal transcription and cell proliferation. Kermekchiev M and Ivanova L, Mol Cell Biol 2001 Dec;21(24):8255-63.
2. NCBI rat LocusLink and RefSeq merged data October 15, 2003 NCBI rat LocusLink and RefSeq merged data October 15, 2003

Genomics

Markers in Region
PMC164283P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.07103,506,074 - 103,506,174NCBIRnor5.0
RGSC_v3.4799,315,183 - 99,315,282UniSTSRGSC3.4
Celera790,606,579 - 90,606,678UniSTS
PMC343947P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.07103,506,074 - 103,506,174NCBIRnor5.0
RGSC_v3.4799,315,183 - 99,315,282UniSTSRGSC3.4
Celera790,606,579 - 90,606,678UniSTS


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: NM_147136   ⟹   NP_671477
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0630,638,801 - 30,639,289 (-)NCBI
Rnor_5.0638,855,602 - 38,855,871 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_671477 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAP92618 (Get FASTA)   NCBI Sequence Viewer  
  AAS66225 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_671477   ⟸   NM_147136
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene 257642 ENTREZGENE
PhenoGen LOC257642 PhenoGen
UniProt Q99JC0_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-05-24 LOC257642  rRNA promoter binding protein  LOC503325  hypothetical protein LOC503325  Data merged from RGD:1562374 1643240 APPROVED
2006-02-09 LOC257642  rRNA promoter binding protein      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-02-09 LOC503325  hypothetical protein LOC503325      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_transcript open reading frame is 96% complementary to a central region of the large rRNA 1299600