Acbd3 (acyl-CoA binding domain containing 3) - Rat Genome Database

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Gene: Acbd3 (acyl-CoA binding domain containing 3) Rattus norvegicus
Analyze
Symbol: Acbd3
Name: acyl-CoA binding domain containing 3
RGD ID: 727851
Description: Predicted to enable protein kinase A regulatory subunit binding activity. Predicted to be involved in steroid biosynthetic process. Located in Golgi membrane. Orthologous to human ACBD3 (acyl-CoA binding domain containing 3); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding (Ensembl: pseudogene)
RefSeq Status: VALIDATED
Previously known as: acyl-CoA-binding domain-containing protein 3; acyl-Coenzyme A binding domain containing 3; DAP; DMT1-associated protein; GOCAP1; golgi complex-associated protein 1; golgi phosphoprotein 1; golgi resident protein GCP60; GOLPH1; LOC289312; neurotrophin receptor alike death domain protein; p75-like apoptosis-inducing death domain protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81394,987,643 - 95,016,356 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1394,987,541 - 95,016,355 (+)EnsemblGRCr8
mRatBN7.21392,455,813 - 92,484,556 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1392,455,655 - 92,483,380 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1394,961,181 - 94,989,895 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01396,361,112 - 96,389,826 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01393,535,813 - 93,564,526 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01399,004,942 - 99,035,520 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1399,004,942 - 99,035,519 (+)Ensemblrn6Rnor6.0
Rnor_5.013104,006,998 - 104,036,981 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41396,461,327 - 96,490,328 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1392,001,461 - 92,029,998 (+)NCBICelera
RGSC_v3.11396,650,262 - 96,679,260 (+)NCBI
Cytogenetic Map13q26NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP,ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
aconitine  (EXP)
aflatoxin B1  (ISO)
amitrole  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-naphthoflavone  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (ISO)
chloroprene  (EXP)
chlorpyrifos  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (EXP)
dibutyl phthalate  (ISO)
dimethylselenide  (ISO)
Enterolactone  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
fluoranthene  (ISO)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
hydrogen peroxide  (ISO)
hydroxyl  (ISO)
iron atom  (EXP)
iron(0)  (EXP)
ivermectin  (ISO)
ketamine  (EXP)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N-nitrosodiethylamine  (EXP)
nitric oxide  (EXP)
oxybenzone  (EXP)
ozone  (ISO)
p-toluidine  (EXP)
paracetamol  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
propiconazole  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (ISO)
tetrahydropalmatine  (ISO)
thapsigargin  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
triadimefon  (EXP)
tunicamycin  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
Golgi apparatus  (ISO)
Golgi membrane  (IBA,IDA,IEA,ISO)
mitochondrion  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Corticotropin-releasing factor binding protein enters the regulated secretory pathway in neuroendocrine cells and cortical neurons. Blanco EH, etal., Neuropeptides. 2011 Aug;45(4):273-9. doi: 10.1016/j.npep.2011.05.002. Epub 2011 May 31.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. NCBI rat LocusLink and RefSeq merged data October 15, 2003 NCBI rat LocusLink and RefSeq merged data October 15, 2003
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:17911601   PMID:19946888   PMID:27009356   PMID:30361391  


Genomics

Comparative Map Data
Acbd3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81394,987,643 - 95,016,356 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1394,987,541 - 95,016,355 (+)EnsemblGRCr8
mRatBN7.21392,455,813 - 92,484,556 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1392,455,655 - 92,483,380 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1394,961,181 - 94,989,895 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01396,361,112 - 96,389,826 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01393,535,813 - 93,564,526 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01399,004,942 - 99,035,520 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1399,004,942 - 99,035,519 (+)Ensemblrn6Rnor6.0
Rnor_5.013104,006,998 - 104,036,981 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41396,461,327 - 96,490,328 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1392,001,461 - 92,029,998 (+)NCBICelera
RGSC_v3.11396,650,262 - 96,679,260 (+)NCBI
Cytogenetic Map13q26NCBI
ACBD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381226,144,679 - 226,186,741 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1226,144,679 - 226,186,762 (-)Ensemblhg38GRCh38
GRCh371226,332,380 - 226,374,442 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361224,399,003 - 224,441,046 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341222,639,116 - 222,681,158NCBI
Celera1199,523,027 - 199,565,088 (-)NCBICelera
Cytogenetic Map1q42.12NCBI
HuRef1196,849,546 - 196,891,524 (-)NCBIHuRef
CHM1_11227,605,141 - 227,647,173 (-)NCBICHM1_1
T2T-CHM13v2.01225,332,550 - 225,374,626 (-)NCBIT2T-CHM13v2.0
Acbd3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391180,553,608 - 180,581,769 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1180,553,608 - 180,581,769 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381180,726,043 - 180,754,204 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1180,726,043 - 180,754,204 (+)Ensemblmm10GRCm38
MGSCv371182,656,174 - 182,684,335 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361182,562,718 - 182,590,840 (+)NCBIMGSCv36mm8
Celera1187,789,212 - 187,816,898 (+)NCBICelera
Cytogenetic Map1H4NCBI
cM Map184.46NCBI
Acbd3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955489339,561 - 381,496 (-)Ensembl
ChiLan1.0NW_004955489337,578 - 381,557 (-)NCBIChiLan1.0ChiLan1.0
ACBD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2123,351,678 - 23,392,799 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1123,301,215 - 23,341,295 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01201,606,028 - 201,646,107 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11206,601,100 - 206,641,355 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1206,603,023 - 206,641,311 (-)EnsemblpanPan2panpan1.1
ACBD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1738,713,729 - 38,733,138 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl738,714,592 - 38,731,558 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha738,171,477 - 38,213,155 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0738,523,648 - 38,566,134 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl738,523,655 - 38,566,210 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1738,362,436 - 38,404,682 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0738,369,163 - 38,411,384 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0738,640,120 - 38,682,380 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Acbd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934451,792,205 - 51,829,544 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365262,919,667 - 2,955,010 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365262,917,792 - 2,955,072 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACBD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1014,031,021 - 14,069,517 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11014,032,370 - 14,049,598 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ACBD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1253,585,619 - 3,630,711 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl253,585,625 - 3,628,789 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660553,587,013 - 3,631,969 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Acbd3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624807265,275 - 301,326 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624807265,519 - 301,383 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Acbd3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11059,049,533 - 59,077,102 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Acbd3
187 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:89
Count of miRNA genes:69
Interacting mature miRNAs:84
Transcripts:ENSRNOT00000004293
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738027Lnnr6Liver neoplastic nodule remodeling QTL 63.3liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)1365613454109350286Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
7387280Uae43Urinary albumin excretion QTL 435.690.4174urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1368983334109350286Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1367635937109350286Rat
1576318Schws5Schwannoma susceptibility QTL 50.0351nervous system integrity trait (VT:0010566)post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)1364497900109350286Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1338975045103588154Rat
8655951Rf63Renal function QTL 6312.2blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)1371610804109350286Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1383286150109350286Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137298450699745408Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1367635937109350286Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1364375743109350286Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1367635937109350286Rat

Markers in Region
RH125959  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21392,484,302 - 92,484,525 (+)MAPPERmRatBN7.2
Rnor_6.01399,035,267 - 99,035,489NCBIRnor6.0
Rnor_5.013104,036,728 - 104,036,950UniSTSRnor5.0
RGSC_v3.41396,490,075 - 96,490,297UniSTSRGSC3.4
Celera1392,029,745 - 92,029,967UniSTS
Cytogenetic Map13q26UniSTS
BE120590  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21392,475,485 - 92,475,654 (+)MAPPERmRatBN7.2
Rnor_6.01399,026,453 - 99,026,621NCBIRnor6.0
Rnor_5.013104,027,914 - 104,028,082UniSTSRnor5.0
RGSC_v3.41396,481,261 - 96,481,429UniSTSRGSC3.4
Celera1392,020,931 - 92,021,099UniSTS
RH 3.4 Map13625.8UniSTS
Cytogenetic Map13q26UniSTS
AI234525  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21392,484,373 - 92,484,488 (+)MAPPERmRatBN7.2
Rnor_6.01399,035,338 - 99,035,452NCBIRnor6.0
Rnor_5.013104,036,799 - 104,036,913UniSTSRnor5.0
RGSC_v3.41396,490,146 - 96,490,260UniSTSRGSC3.4
Celera1392,029,816 - 92,029,930UniSTS
RH 3.4 Map13627.7UniSTS
Cytogenetic Map13q26UniSTS
C76375  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21392,484,377 - 92,484,486 (+)MAPPERmRatBN7.2
Rnor_6.01399,035,342 - 99,035,450NCBIRnor6.0
Rnor_5.013104,036,803 - 104,036,911UniSTSRnor5.0
RGSC_v3.41396,490,150 - 96,490,258UniSTSRGSC3.4
Celera1392,029,820 - 92,029,928UniSTS
Cytogenetic Map13q26UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000004293   ⟹   ENSRNOP00000004293
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1394,987,541 - 95,016,355 (+)Ensembl
mRatBN7.2 Ensembl1392,455,655 - 92,483,380 (+)Ensembl
Rnor_6.0 Ensembl1399,005,142 - 99,034,361 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000085390   ⟹   ENSRNOP00000074070
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1399,004,942 - 99,035,519 (+)Ensembl
RefSeq Acc Id: NM_182843   ⟹   NP_878263
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81394,987,643 - 95,016,356 (+)NCBI
mRatBN7.21392,455,813 - 92,484,556 (+)NCBI
Rnor_6.01399,004,942 - 99,035,520 (+)NCBI
Rnor_5.013104,006,998 - 104,036,981 (+)NCBI
RGSC_v3.41396,461,327 - 96,490,328 (+)RGD
Celera1392,001,461 - 92,029,998 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_878263 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH83877 (Get FASTA)   NCBI Sequence Viewer  
  AAP94639 (Get FASTA)   NCBI Sequence Viewer  
  EDL94830 (Get FASTA)   NCBI Sequence Viewer  
  Q7TNY6 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_878263   ⟸   NM_182843
- UniProtKB: A6JGH4 (UniProtKB/TrEMBL),   Q5XI18 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000004293   ⟸   ENSRNOT00000004293
Ensembl Acc Id: ENSRNOP00000074070   ⟸   ENSRNOT00000085390
Protein Domains
ACB   GOLD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7TNY6-F1-model_v2 AlphaFold Q7TNY6 1-526 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699061
Promoter ID:EPDNEW_R9586
Type:initiation region
Name:Acbd3_1
Description:acyl-CoA binding domain containing 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01399,004,957 - 99,005,017EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:727851 AgrOrtholog
BioCyc Gene G2FUF-17115 BioCyc
Ensembl Genes ENSRNOG00000003185 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000004293 ENTREZGENE
Gene3D-CATH 1.20.80.10 UniProtKB/Swiss-Prot
  GOLD domain UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7130229 IMAGE-MGC_LOAD
InterPro Acyl-CoA-binding_prot_CS UniProtKB/Swiss-Prot
  Acyl-CoA-binding_protein UniProtKB/Swiss-Prot
  Acyl-CoA-binding_sf UniProtKB/Swiss-Prot
  FERM/acyl-CoA-bd_prot_sf UniProtKB/Swiss-Prot
  GOLD_dom UniProtKB/Swiss-Prot
  GOLD_dom_sf UniProtKB/Swiss-Prot
  Golgi-PI4KB_interaction UniProtKB/Swiss-Prot
KEGG Report rno:289312 UniProtKB/Swiss-Prot
MGC_CLONE MGC:95164 IMAGE-MGC_LOAD
NCBI Gene 289312 ENTREZGENE
PANTHER GOLGI RESIDENT PROTEIN GCP60 UniProtKB/Swiss-Prot
  LD35087P UniProtKB/Swiss-Prot
Pfam ACBP UniProtKB/Swiss-Prot
  GOLD_2 UniProtKB/Swiss-Prot
PhenoGen Acbd3 PhenoGen
PROSITE ACB_1 UniProtKB/Swiss-Prot
  ACB_2 UniProtKB/Swiss-Prot
  GOLD UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000003185 RatGTEx
Superfamily-SCOP SSF101576 UniProtKB/Swiss-Prot
  SSF47027 UniProtKB/Swiss-Prot
UniProt A6JGH4 ENTREZGENE, UniProtKB/TrEMBL
  GCP60_RAT UniProtKB/Swiss-Prot
  Q5XI18 ENTREZGENE, UniProtKB/TrEMBL
  Q7TNY6 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-28 Acbd3  acyl-CoA binding domain containing 3  Acbd3  acyl-Coenzyme A binding domain containing 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Acbd3  acyl-Coenzyme A binding domain containing 3    DMT1-associated protein  Name updated 1299863 APPROVED
2004-09-10 Acbd3  DMT1-associated protein  LOC289312    Symbol and Name updated 1299863 APPROVED