Pigu (phosphatidylinositol glycan anchor biosynthesis, class U) - Rat Genome Database

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Gene: Pigu (phosphatidylinositol glycan anchor biosynthesis, class U) Rattus norvegicus
Analyze
Symbol: Pigu
Name: phosphatidylinositol glycan anchor biosynthesis, class U
RGD ID: 727825
Description: Predicted to enable GPI-anchor transamidase activity. Predicted to contribute to GPI anchor binding activity. Involved in GPI anchored protein biosynthesis. Predicted to be located in plasma membrane. Predicted to be part of GPI-anchor transamidase complex. Orthologous to human PIGU (phosphatidylinositol glycan anchor biosynthesis class U); PARTICIPATES IN glycosylphosphatidylinositol anchor biosynthetic pathway; INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: CDC91 cell division cycle 91-like 1; CDC91 cell division cycle 91-like 1 (S. cerevisiae); Cdc91l1; cell division cycle protein 91-like 1; GPI transamidase component PIG-U; GPI-anchor transamidase component PIGU; liver regeneration-related protein LRRGT00059; LOC108350506; LRRGT00059; phosphatidylinositol glycan anchor biosynthesis class U protein; protein CDC91-like 1; sakura; uncharacterized LOC108350506
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83164,245,011 - 164,341,444 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3164,245,011 - 164,341,912 (-)EnsemblGRCr8
mRatBN7.23143,784,831 - 143,881,268 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3143,784,832 - 143,880,807 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3147,650,902 - 147,724,039 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03156,268,183 - 156,341,312 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03154,007,720 - 154,080,840 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03150,803,096 - 150,885,597 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3150,803,097 - 150,885,616 (-)Ensemblrn6Rnor6.0
Rnor_5.03157,171,341 - 157,253,350 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43145,760,693 - 145,841,916 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3142,512,108 - 142,584,503 (-)NCBICelera
RGSC_v3.13145,666,315 - 145,747,538 (-)NCBI
Cytogenetic Map3q41NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Human PIG-U and yeast Cdc91p are the fifth subunit of GPI transamidase that attaches GPI-anchors to proteins. Hong Y, etal., Mol Biol Cell 2003 May;14(5):1780-9. Epub 2003 Jan 26.
3. NCBI rat LocusLink and RefSeq merged data October 15, 2003 NCBI rat LocusLink and RefSeq merged data October 15, 2003
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15034568   PMID:19946888  


Genomics

Comparative Map Data
Pigu
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83164,245,011 - 164,341,444 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3164,245,011 - 164,341,912 (-)EnsemblGRCr8
mRatBN7.23143,784,831 - 143,881,268 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3143,784,832 - 143,880,807 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3147,650,902 - 147,724,039 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03156,268,183 - 156,341,312 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03154,007,720 - 154,080,840 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03150,803,096 - 150,885,597 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3150,803,097 - 150,885,616 (-)Ensemblrn6Rnor6.0
Rnor_5.03157,171,341 - 157,253,350 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43145,760,693 - 145,841,916 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3142,512,108 - 142,584,503 (-)NCBICelera
RGSC_v3.13145,666,315 - 145,747,538 (-)NCBI
Cytogenetic Map3q41NCBI
PIGU
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382034,560,542 - 34,677,092 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2034,560,542 - 34,698,790 (-)Ensemblhg38GRCh38
GRCh372033,148,346 - 33,264,896 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362032,612,007 - 32,728,750 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342032,612,006 - 32,728,750NCBI
Celera2029,897,474 - 30,014,189 (-)NCBICelera
Cytogenetic Map20q11.22NCBI
HuRef2029,928,895 - 30,044,277 (-)NCBIHuRef
CHM1_12033,049,160 - 33,166,522 (-)NCBICHM1_1
T2T-CHM13v2.02036,283,696 - 36,397,781 (-)NCBIT2T-CHM13v2.0
Pigu
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392155,120,163 - 155,199,344 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2155,120,163 - 155,199,350 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm382155,278,243 - 155,357,424 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2155,278,243 - 155,357,430 (-)Ensemblmm10GRCm38
MGSCv372155,103,988 - 155,183,160 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362154,969,693 - 155,048,865 (-)NCBIMGSCv36mm8
Celera2161,210,808 - 161,289,950 (-)NCBICelera
Cytogenetic Map2H1NCBI
cM Map277.18NCBI
Pigu
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542226,685,060 - 26,775,416 (+)Ensembl
ChiLan1.0NW_00495542226,685,060 - 26,774,261 (+)NCBIChiLan1.0ChiLan1.0
PIGU
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22140,293,599 - 40,408,274 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12040,286,701 - 40,401,376 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02030,889,183 - 31,004,166 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12032,020,608 - 32,133,493 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2032,020,608 - 32,133,493 (-)EnsemblpanPan2panpan1.1
PIGU
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12423,674,133 - 23,768,119 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2423,674,137 - 23,768,073 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2423,319,722 - 23,413,720 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02424,364,628 - 24,458,705 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2424,364,632 - 24,458,661 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12423,651,987 - 23,746,793 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02423,747,087 - 23,841,930 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02424,186,009 - 24,280,792 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Pigu
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640172,645,001 - 172,736,404 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365616,013,145 - 6,107,667 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365616,013,145 - 6,104,548 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PIGU
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1737,942,707 - 38,081,392 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11737,959,703 - 38,081,110 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21743,158,041 - 43,276,737 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PIGU
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1238,859,142 - 38,965,926 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl238,859,474 - 38,965,731 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605087,863,868 - 87,971,667 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pigu
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248424,692,741 - 4,800,825 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248424,692,831 - 4,800,342 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Pigu
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v15134,633,870 - 134,705,097 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Pigu
346 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:79
Count of miRNA genes:61
Interacting mature miRNAs:70
Transcripts:ENSRNOT00000034708
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141555229186555229Rat
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3141555229186555229Rat
1582233Insul10Insulin level QTL 105.40.0015blood insulin amount (VT:0001560)serum insulin level times blood glucose level (CMO:0002040)3133259579178259579Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3141555229186555229Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3151075912189428310Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3141555229186555229Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)3129154923182114333Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3141555229186555229Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3161492708189428310Rat
12879875Kidm64Kidney mass QTL 640.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3141555229186555229Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
61335Bp20Blood pressure QTL 203arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3161799493176036425Rat
1331726Bp208Blood pressure QTL 2083.129arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3161799270187311134Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3133134628178134628Rat
1582213Insul6Insulin level QTL 63.70.0009blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
1300173Rf11Renal function QTL 113.38renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)3141508991166376254Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3152055202189428310Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3142898802187898802Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)3145335553189428310Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3125116475170116475Rat
1582256Insul9Insulin level QTL 94.40.0016blood insulin amount (VT:0001560)absolute change in serum insulin level (CMO:0002038)3155759447189428310Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3139299381184299381Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3141508991177728348Rat
5686842Rf59Renal function QTL 59urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)3122395989167395989Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3137114333182114333Rat
1582248Insul7Insulin level QTL 73.90.0041blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)3131036586176036586Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)3131036586176036586Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)398651826167012663Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3151075912189428310Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3151075912189428310Rat
12879871Am7Aortic mass QTL 70.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)3141555229186555229Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3144575244189428310Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)3160357340167835660Rat

Markers in Region
RH128169  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23143,784,414 - 143,784,625 (+)MAPPERmRatBN7.2
Rnor_6.03150,802,680 - 150,802,890NCBIRnor6.0
Rnor_5.03157,170,925 - 157,171,135UniSTSRnor5.0
RGSC_v3.43145,760,277 - 145,760,487UniSTSRGSC3.4
Celera3142,511,692 - 142,511,902UniSTS
Cytogenetic Map3q42UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000034708   ⟹   ENSRNOP00000032963
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3164,245,011 - 164,340,927 (-)Ensembl
mRatBN7.2 Ensembl3143,784,834 - 143,857,253 (-)Ensembl
Rnor_6.0 Ensembl3150,803,097 - 150,885,475 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000038809   ⟹   ENSRNOP00000036137
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3164,309,380 - 164,317,535 (-)Ensembl
mRatBN7.2 Ensembl3143,849,216 - 143,857,372 (-)Ensembl
Rnor_6.0 Ensembl3150,877,460 - 150,885,616 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000089935   ⟹   ENSRNOP00000075495
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3164,245,011 - 164,341,912 (-)Ensembl
mRatBN7.2 Ensembl3143,784,832 - 143,880,807 (-)Ensembl
Rnor_6.0 Ensembl3150,803,390 - 150,855,228 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000127362   ⟹   ENSRNOP00000111561
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3164,250,753 - 164,317,592 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000157126   ⟹   ENSRNOP00000105432
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3164,245,011 - 164,320,494 (-)Ensembl
RefSeq Acc Id: NM_181637   ⟹   NP_853668
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83164,245,011 - 164,317,393 (-)NCBI
mRatBN7.23143,784,831 - 143,857,230 (-)NCBI
Rnor_6.03150,803,096 - 150,885,475 (-)NCBI
Rnor_5.03157,171,341 - 157,253,350 (-)NCBI
RGSC_v3.43145,760,693 - 145,841,916 (-)RGD
Celera3142,512,108 - 142,584,503 (-)RGD
Sequence:
RefSeq Acc Id: XM_039105329   ⟹   XP_038961257
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83164,245,013 - 164,341,444 (-)NCBI
mRatBN7.23143,784,831 - 143,881,268 (-)NCBI
RefSeq Acc Id: XM_039105330   ⟹   XP_038961258
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83164,245,013 - 164,317,403 (-)NCBI
mRatBN7.23143,784,831 - 143,857,273 (-)NCBI
RefSeq Acc Id: XM_063284048   ⟹   XP_063140118
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83164,262,542 - 164,318,663 (-)NCBI
RefSeq Acc Id: XM_063284049   ⟹   XP_063140119
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83164,262,548 - 164,318,663 (-)NCBI
RefSeq Acc Id: NP_853668   ⟸   NM_181637
- UniProtKB: Q8CHJ1 (UniProtKB/Swiss-Prot),   A6KI30 (UniProtKB/TrEMBL),   F1LPK9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000036137   ⟸   ENSRNOT00000038809
Ensembl Acc Id: ENSRNOP00000075495   ⟸   ENSRNOT00000089935
Ensembl Acc Id: ENSRNOP00000032963   ⟸   ENSRNOT00000034708
RefSeq Acc Id: XP_038961257   ⟸   XM_039105329
- Peptide Label: isoform X1
- UniProtKB: A0A0G2KAR3 (UniProtKB/TrEMBL),   F1LPK9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961258   ⟸   XM_039105330
- Peptide Label: isoform X2
- UniProtKB: A6KI31 (UniProtKB/TrEMBL),   F1LPK9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140118   ⟸   XM_063284048
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063140119   ⟸   XM_063284049
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000111561   ⟸   ENSRNOT00000127362
Ensembl Acc Id: ENSRNOP00000105432   ⟸   ENSRNOT00000157126

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8CHJ1-F1-model_v2 AlphaFold Q8CHJ1 1-435 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692582
Promoter ID:EPDNEW_R3107
Type:multiple initiation site
Name:Pigu_1
Description:phosphatidylinositol glycan anchor biosynthesis, class U
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03150,885,482 - 150,885,542EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:727825 AgrOrtholog
BioCyc Gene G2FUF-47144 BioCyc
Ensembl Genes ENSRNOG00000025181 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000034708 ENTREZGENE
  ENSRNOT00000034708.6 UniProtKB/Swiss-Prot
  ENSRNOT00000038809.7 UniProtKB/Swiss-Prot
  ENSRNOT00000089935 ENTREZGENE
InterPro PIG-U UniProtKB/Swiss-Prot
KEGG Report rno:353304 UniProtKB/Swiss-Prot
NCBI Gene 353304 ENTREZGENE
PANTHER PHOSPHATIDYLINOSITOL GLYCAN ANCHOR BIOSYNTHESIS CLASS U PROTEIN UniProtKB/Swiss-Prot
  PTHR13121 UniProtKB/Swiss-Prot
Pfam PIG-U UniProtKB/Swiss-Prot
PhenoGen Pigu PhenoGen
RatGTEx ENSRNOG00000025181 RatGTEx
UniProt A0A0G2KAR3 ENTREZGENE, UniProtKB/TrEMBL
  A0A140TAE9_RAT UniProtKB/TrEMBL
  A0ABK0LNU7_RAT UniProtKB/TrEMBL
  A0ABK0LYK1_RAT UniProtKB/TrEMBL
  A6KI30 ENTREZGENE, UniProtKB/TrEMBL
  A6KI31 ENTREZGENE, UniProtKB/TrEMBL
  F1LPK9 ENTREZGENE, UniProtKB/TrEMBL
  PIGU_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Pigu  phosphatidylinositol glycan anchor biosynthesis, class U  LOC108350506  uncharacterized LOC108350506  Data merged from RGD:11492390 737654 PROVISIONAL
2016-08-02 LOC108350506  uncharacterized LOC108350506      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-04-20 Pigu  phosphatidylinositol glycan anchor biosynthesis, class U  Cdc91l1  CDC91 cell division cycle 91-like 1 (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-08 Cdc91l1  CDC91 cell division cycle 91-like 1 (S. cerevisiae)      Symbol and Name status set to approved 1299863 APPROVED