Astn1 (astrotactin 1) - Rat Genome Database

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Gene: Astn1 (astrotactin 1) Rattus norvegicus
Analyze
Symbol: Astn1
Name: astrotactin 1
RGD ID: 727799
Description: Predicted to be involved in neuron cell-cell adhesion and neuron migration. Predicted to act upstream of or within cell migration; cell-cell adhesion; and locomotory behavior. Predicted to be located in external side of plasma membrane. Predicted to be active in endosome and membrane. Orthologous to human ASTN1 (astrotactin 1); INTERACTS WITH bis(2-ethylhexyl) phthalate; bisphenol A; Butylbenzyl phthalate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: astrotactin-1; LOC304900; synaptogenesis-related mRNA sequence 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81373,070,754 - 73,388,902 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1373,071,267 - 73,388,895 (+)EnsemblGRCr8
mRatBN7.21370,537,423 - 70,855,440 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1370,537,703 - 70,855,440 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1373,116,582 - 73,431,730 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01374,414,387 - 74,732,605 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01371,674,339 - 71,991,950 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01376,054,965 - 76,370,674 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1376,055,410 - 76,370,674 (+)Ensemblrn6Rnor6.0
Rnor_5.01380,970,094 - 81,285,187 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41373,650,722 - 73,964,585 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1370,353,119 - 70,668,934 (+)NCBICelera
RGSC_v3.11373,898,509 - 73,946,760 (+)NCBI
Cytogenetic Map13q22NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
endosome  (IBA,IEA,ISO)
external side of plasma membrane  (IEA,ISO)
membrane  (IBA,IEA,ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Mice that lack astrotactin have slowed neuronal migration. Adams NC, etal., Development 2002 Feb;129(4):965-72.
2. Characterization of biological pathways associated with a 1.37 Mbp genomic region protective of hypertension in Dahl S rats. Cowley AW, etal., Physiol Genomics. 2014 Jun 1;46(11):398-410. doi: 10.1152/physiolgenomics.00179.2013. Epub 2014 Apr 8.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. NCBI rat LocusLink and RefSeq merged data October 15, 2003 NCBI rat LocusLink and RefSeq merged data October 15, 2003
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1821847   PMID:8602532   PMID:14499481   PMID:20573900   PMID:22871113  


Genomics

Comparative Map Data
Astn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81373,070,754 - 73,388,902 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1373,071,267 - 73,388,895 (+)EnsemblGRCr8
mRatBN7.21370,537,423 - 70,855,440 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1370,537,703 - 70,855,440 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1373,116,582 - 73,431,730 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01374,414,387 - 74,732,605 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01371,674,339 - 71,991,950 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01376,054,965 - 76,370,674 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1376,055,410 - 76,370,674 (+)Ensemblrn6Rnor6.0
Rnor_5.01380,970,094 - 81,285,187 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41373,650,722 - 73,964,585 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1370,353,119 - 70,668,934 (+)NCBICelera
RGSC_v3.11373,898,509 - 73,946,760 (+)NCBI
Cytogenetic Map13q22NCBI
ASTN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381176,857,321 - 177,164,712 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1176,857,302 - 177,164,973 (-)Ensemblhg38GRCh38
GRCh371176,826,457 - 177,133,848 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361175,096,826 - 175,400,647 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1149,940,230 - 150,244,095 (-)NCBICelera
Cytogenetic Map1q25.2NCBI
HuRef1148,056,525 - 148,361,033 (-)NCBIHuRef
CHM1_11178,254,310 - 178,558,015 (-)NCBICHM1_1
T2T-CHM13v2.01176,211,993 - 176,519,385 (-)NCBIT2T-CHM13v2.0
Astn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391158,189,647 - 158,519,351 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1158,189,843 - 158,519,351 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381158,362,102 - 158,691,786 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1158,362,273 - 158,691,781 (+)Ensemblmm10GRCm38
MGSCv371160,292,471 - 160,621,917 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361160,199,033 - 160,528,463 (+)NCBIMGSCv36mm8
Celera1160,755,390 - 161,087,245 (+)NCBICelera
Cytogenetic Map1H1NCBI
cM Map168.35NCBI
Astn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540616,445,495 - 16,742,295 (-)Ensembl
ChiLan1.0NW_00495540616,445,738 - 16,742,185 (-)NCBIChiLan1.0ChiLan1.0
ASTN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2172,554,318 - 72,858,097 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1172,224,518 - 72,528,310 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01152,385,103 - 152,688,885 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11156,082,184 - 156,385,728 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1156,085,398 - 156,284,771 (-)EnsemblpanPan2panpan1.1
ASTN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1722,455,117 - 22,752,044 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl722,455,499 - 22,757,029 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha721,979,662 - 22,275,982 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0722,201,861 - 22,498,424 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl722,193,342 - 22,504,025 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1722,107,492 - 22,404,097 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0722,207,414 - 22,504,112 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0722,350,297 - 22,647,240 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Astn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934493,614,273 - 93,896,633 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648111,461,009 - 11,743,386 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648111,461,091 - 11,743,376 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ASTN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9118,646,910 - 118,968,970 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.19118,649,144 - 118,969,032 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29130,343,820 - 130,424,020 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ASTN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12552,110,983 - 52,416,743 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2552,110,880 - 52,413,554 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605553,681,740 - 53,987,943 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Astn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247715,027,442 - 5,315,460 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247715,027,422 - 5,384,023 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Astn1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11037,687,440 - 37,995,176 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Astn1
1648 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:435
Count of miRNA genes:223
Interacting mature miRNAs:302
Transcripts:ENSRNOT00000007660
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134863963493639634Rat
10755495Bp387Blood pressure QTL 3873.78arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133721624190057603Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1338975045103588154Rat
8655951Rf63Renal function QTL 6312.2blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)1371610804109350286Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133992469384924693Rat
8655945Rf61Renal function QTL 613.6blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)137161080489333251Rat
71119Thym2Thymus enlargement QTL 23.8thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)134874981487285480Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133996821183286298Rat
1331783Bp221Blood pressure QTL 2213.72886arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)137161080489333251Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137298450699745408Rat
1300166Kidm6Kidney mass QTL 63.93kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)137161080489333251Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1367635937109350286Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13742179187286911Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133708798382087983Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)134098358585983585Rat
724564Uae11Urinary albumin excretion QTL 115.7urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)134735425894285672Rat
738027Lnnr6Liver neoplastic nodule remodeling QTL 63.3liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)1365613454109350286Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
7387280Uae43Urinary albumin excretion QTL 435.690.4174urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1368983334109350286Rat
738026Lnnr5Liver neoplastic nodule remodeling QTL 53.29liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)136242459288113509Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133379409678794096Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1367635937109350286Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133992469384924693Rat
1576318Schws5Schwannoma susceptibility QTL 50.0351nervous system integrity trait (VT:0010566)post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)1364497900109350286Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133483494779834947Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133981472684814726Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133996821184968211Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1364375743109350286Rat
11530006Niddm72Non-insulin dependent diabetes mellitus QTL 720.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)133828629883286298Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1367635937109350286Rat

Markers in Region
RH137263  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21370,555,103 - 70,555,286 (+)MAPPERmRatBN7.2
Rnor_6.01376,072,656 - 76,072,838NCBIRnor6.0
Rnor_5.01380,987,786 - 80,987,968UniSTSRnor5.0
RGSC_v3.41373,667,807 - 73,667,989UniSTSRGSC3.4
Celera1370,370,520 - 70,370,702UniSTS
RH 3.4 Map13418.7UniSTS
Cytogenetic Map13q22UniSTS
RH139527  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21370,854,979 - 70,855,175 (+)MAPPERmRatBN7.2
Rnor_6.01376,370,214 - 76,370,409NCBIRnor6.0
Rnor_5.01381,284,727 - 81,284,922UniSTSRnor5.0
RGSC_v3.41373,967,072 - 73,967,267UniSTSRGSC3.4
Celera1370,668,474 - 70,668,669UniSTS
Cytogenetic Map13q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
10 12 67 165 82 81 50 83 50 6 318 183 11 139 67 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000007660
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1373,071,267 - 73,388,895 (+)Ensembl
mRatBN7.2 Ensembl1370,537,703 - 70,855,440 (+)Ensembl
Rnor_6.0 Ensembl1376,195,329 - 76,370,674 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000075976
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1376,195,323 - 76,370,674 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000076284
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1373,071,267 - 73,313,777 (+)Ensembl
mRatBN7.2 Ensembl1370,537,703 - 70,780,311 (+)Ensembl
Rnor_6.0 Ensembl1376,055,410 - 76,195,168 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000076644
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1376,335,972 - 76,343,325 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000121887   ⟹   ENSRNOP00000105505
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1373,071,267 - 73,388,895 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000172522   ⟹   ENSRNOP00000110569
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1373,071,475 - 73,388,893 (+)Ensembl
RefSeq Acc Id: NM_001170603   ⟹   NP_001164074
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81373,071,267 - 73,388,895 (+)NCBI
mRatBN7.21370,537,787 - 70,855,433 (+)NCBI
Rnor_6.01376,055,255 - 76,370,674 (+)NCBI
Rnor_5.01380,970,094 - 81,285,187 (+)NCBI
Celera1370,353,119 - 70,668,934 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039090767   ⟹   XP_038946695
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81373,070,754 - 73,388,902 (+)NCBI
mRatBN7.21370,538,019 - 70,855,440 (+)NCBI
RefSeq Acc Id: XM_039090768   ⟹   XP_038946696
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81373,070,754 - 73,388,902 (+)NCBI
mRatBN7.21370,537,423 - 70,855,440 (+)NCBI
RefSeq Acc Id: XM_039090769   ⟹   XP_038946697
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81373,070,754 - 73,388,902 (+)NCBI
mRatBN7.21370,537,424 - 70,855,440 (+)NCBI
RefSeq Acc Id: XM_039090770   ⟹   XP_038946698
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81373,084,750 - 73,388,902 (+)NCBI
mRatBN7.21370,550,939 - 70,855,440 (+)NCBI
RefSeq Acc Id: NP_001164074   ⟸   NM_001170603
- Peptide Label: precursor
- Sequence:
RefSeq Acc Id: XP_038946696   ⟸   XM_039090768
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038946697   ⟸   XM_039090769
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038946695   ⟸   XM_039090767
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038946698   ⟸   XM_039090770
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000105505   ⟸   ENSRNOT00000121887
Ensembl Acc Id: ENSRNOP00000110569   ⟸   ENSRNOT00000172522
Protein Domains
EGF-like   MACPF

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:727799 AgrOrtholog
BioCyc Gene G2FUF-17780 BioCyc
Ensembl Genes ENSRNOG00000005667 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000007660 ENTREZGENE
  ENSRNOT00000007660.10 UniProtKB/TrEMBL
  ENSRNOT00000076284.3 UniProtKB/TrEMBL
  ENSRNOT00000121887.1 UniProtKB/TrEMBL
  ENSRNOT00000172522 ENTREZGENE
  ENSRNOT00000172522.1 UniProtKB/TrEMBL
Gene3D-CATH Laminin UniProtKB/TrEMBL
InterPro Annexin-like UniProtKB/TrEMBL
  ASTN1_2_EGF_Fn UniProtKB/TrEMBL
  ASTN_1_2_N UniProtKB/TrEMBL
  Astrotactin UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  MACPF UniProtKB/TrEMBL
NCBI Gene 304900 ENTREZGENE
PANTHER ASTROTACTIN-1 UniProtKB/TrEMBL
  PTHR16592 UniProtKB/TrEMBL
Pfam Annexin_like UniProtKB/TrEMBL
  ASTN1_2_EGF_Fn UniProtKB/TrEMBL
  ASTN_1_2_N UniProtKB/TrEMBL
PhenoGen Astn1 PhenoGen
RatGTEx ENSRNOG00000005667 RatGTEx
SMART EGF UniProtKB/TrEMBL
  MACPF UniProtKB/TrEMBL
Superfamily-SCOP SSF49265 UniProtKB/TrEMBL
UniProt A0A8I5ZN05 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A7L8_RAT UniProtKB/TrEMBL
  A0ABK0L6J0_RAT UniProtKB/TrEMBL
  A0ABK0M5W3_RAT UniProtKB/TrEMBL
  A6ID38 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-02-11 Astn1  astrotactin 1  LOC304900  synaptogenesis-related mRNA sequence 1  Symbol and Name updated to reflect Human and Mouse nomenclature 625702 APPROVED