Lsamp (Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCr8 | 11 | 72,053,285 - 74,223,019 (-) | NCBI | GRCr8 | GRCr8 | | GRCr8 | GRCr8 Ensembl | 11 | 72,053,285 - 72,702,134 (-) | Ensembl | | | | GRCr8 | mRatBN7.2 | 11 | 58,547,533 - 60,717,328 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 11 | 58,554,805 - 60,717,029 (-) | Ensembl | | | | mRatBN7.2 | UTH_Rnor_SHR_Utx | 11 | 67,367,903 - 68,009,280 (-) | NCBI | UTH_Rnor_SHR_Utx | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 11 | 60,030,195 - 60,671,566 (-) | NCBI | UTH_Rnor_SHRSP_BbbUtx_1.0 | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 11 | 59,072,347 - 59,731,794 (-) | NCBI | UTH_Rnor_WKY_Bbb_1.0 | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 11 | 58,795,884 - 59,442,772 (-) | NCBI | Rnor_6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 11 | 58,803,140 - 59,110,562 (-) | Ensembl | | | rn6 | Rnor6.0 | Rnor_5.0 | 11 | 62,949,745 - 63,593,038 (-) | NCBI | Rnor_5.0 | Rnor_5.0 | rn5 | | RGSC_v3.4 | 11 | 60,170,406 - 60,870,875 (-) | NCBI | RGSC_v3.4 | RGSC_v3.4 | rn4 | | Celera | 11 | 58,097,179 - 58,730,179 (-) | NCBI | | Celera | | | RGSC_v3.1 | 11 | 60,227,994 - 60,928,464 (-) | NCBI | | | | | Cytogenetic Map | 11 | q21 | NCBI | | | | |
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LSAMP (Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCh38 | 3 | 115,802,374 - 116,445,487 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 3 | 115,802,374 - 117,997,592 (-) | Ensembl | | | hg38 | GRCh38 | GRCh37 | 3 | 115,521,221 - 116,164,334 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 3 | 117,011,832 - 117,647,068 (-) | NCBI | Build 36 | Build 36 | hg18 | NCBI36 | Build 34 | 3 | 117,011,833 - 117,647,068 | NCBI | | | | | Celera | 3 | 113,929,271 - 114,572,430 (-) | NCBI | | Celera | | | Cytogenetic Map | 3 | q13.31 | NCBI | | | | | HuRef | 3 | 112,897,118 - 113,540,663 (-) | NCBI | | HuRef | | | CHM1_1 | 3 | 115,484,952 - 116,127,889 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 3 | 118,522,573 - 119,165,711 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Lsamp (Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCm39 | 16 | 39,804,674 - 42,002,042 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 16 | 41,353,220 - 42,002,042 (+) | Ensembl | | GRCm39 Ensembl | | GRCm39 | GRCm39 Ensembl | 16 | 39,804,723 - 41,229,914 (+) | Ensembl | | GRCm39 Ensembl | | GRCm39 | GRCm38 | 16 | 39,984,254 - 42,181,679 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 16 | 39,984,361 - 42,181,679 (+) | Ensembl | | | mm10 | GRCm38 | MGSCv37 | 16 | 41,533,455 - 42,146,326 (+) | NCBI | MGSCv37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 16 | 41,452,674 - 42,065,545 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 16 | 41,901,502 - 42,509,283 (+) | NCBI | | Celera | | | Cytogenetic Map | 16 | B4 | NCBI | | | | | cM Map | 16 | 28.26 | NCBI | | | | |
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Lsamp (Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChiLan1.0 Ensembl | NW_004955427 | 15,873,278 - 17,911,903 (-) | Ensembl | | | | | ChiLan1.0 | NW_004955427 | 15,871,178 - 16,475,975 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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LSAMP (Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
NHGRI_mPanPan1-v2 | 2 | 113,806,256 - 114,436,270 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 3 | 113,812,916 - 114,441,047 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 3 | 112,952,837 - 113,582,708 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 3 | 119,869,117 - 120,496,648 (-) | NCBI | PanPan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 3 | 119,871,236 - 120,496,120 (-) | Ensembl | | | panPan2 | panpan1.1 |
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LSAMP (Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
CanFam3.1 | 33 | 19,833,604 - 20,478,800 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 33 | 19,841,111 - 20,478,776 (-) | Ensembl | | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 33 | 19,939,960 - 20,579,121 (-) | NCBI | Dog10K_Boxer_Tasha | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 33 | 20,079,910 - 20,727,054 (-) | NCBI | ROS_Cfam_1.0 | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 33 | 20,082,975 - 20,727,018 (-) | Ensembl | | | | ROS_Cfam_1.0 Ensembl | UMICH_Zoey_3.1 | 33 | 19,886,366 - 20,530,790 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 33 | 19,934,283 - 20,567,250 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 33 | 20,478,555 - 21,125,027 (-) | NCBI | UU_Cfam_GSD_1.0 | UU_Cfam_GSD_1.0 | | |
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Lsamp (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
| Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
HiC_Itri_2 | NW_024405602 | 133,775,828 - 134,368,441 (+) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936536 | 3,161,345 - 3,745,641 (-) | Ensembl | | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936536 | 3,161,009 - 3,746,148 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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LSAMP (Sus scrofa - pig) |
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LSAMP (Chlorocebus sabaeus - green monkey) |
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Lsamp (Heterocephalus glaber - naked mole-rat) |
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Lsamp (Rattus rattus - black rat) |
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