Niban1 (niban apoptosis regulator 1) - Rat Genome Database

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Gene: Niban1 (niban apoptosis regulator 1) Rattus norvegicus
Analyze
Symbol: Niban1
Name: niban apoptosis regulator 1
RGD ID: 71088
Description: Predicted to be involved in regulation of protein metabolic process and response to endoplasmic reticulum stress. Predicted to be located in cytosol and plasma membrane. Orthologous to human NIBAN1 (niban apoptosis regulator 1); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Fam129a; family with sequence similarity 129, member A; Niban
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81366,224,219 - 66,377,728 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1366,224,021 - 66,377,724 (+)EnsemblGRCr8
mRatBN7.21363,674,240 - 63,827,748 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1363,674,171 - 63,827,729 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1366,287,539 - 66,433,831 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01367,565,074 - 67,711,810 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01364,821,661 - 64,968,197 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1365,578,185 - 65,724,471 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive1365,792,572 - 65,938,860 (+)NCBILyon_Normotensive
Lyon_Hypertensive1365,728,802 - 65,875,081 (+)NCBILyon_Hypertensive
F344_StmMcwi1365,783,698 - 65,929,956 (+)NCBIF344_StmMcwi
Rnor_6.01368,949,665 - 69,101,600 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1368,949,665 - 69,101,588 (+)Ensemblrn6Rnor6.0
Rnor_5.01373,927,637 - 74,076,144 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41366,467,073 - 66,620,137 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1363,599,277 - 63,749,201 (+)NCBICelera
RGSC_v3.11366,481,152 - 66,634,217 (+)NCBI
Cytogenetic Map13q21NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View
cholestasis  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
(S)-nicotine  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-diaminotoluene  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-azacytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
8-Br-cAMP  (ISO)
acetamide  (EXP)
acrylamide  (EXP)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
allopurinol  (EXP)
amiodarone  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzene-1,2,4-triol  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bicalutamide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
chlordecone  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
cisplatin  (ISO)
clofibric acid  (EXP)
clotrimazole  (EXP)
cobalt dichloride  (EXP,ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dextran sulfate  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
diethylstilbestrol  (EXP,ISO)
disodium selenite  (ISO)
disulfiram  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (EXP)
enniatin  (ISO)
entinostat  (ISO)
ethanol  (ISO)
ethylparaben  (ISO)
etoposide  (ISO)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
genistein  (ISO)
gentamycin  (EXP)
hydroquinone  (ISO)
indole-3-methanol  (EXP)
indometacin  (ISO)
ivermectin  (ISO)
ketoconazole  (EXP)
L-methionine  (ISO)
lamivudine  (ISO)
lucanthone  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (EXP,ISO)
mercury dibromide  (ISO)
methapyrilene  (ISO)
methimazole  (EXP)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
mitomycin C  (ISO)
Moniliformin  (ISO)
nicotine  (ISO)
okadaic acid  (ISO)
paracetamol  (EXP)
pentanal  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP,ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
piroxicam  (ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
propanal  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
sodium fluoride  (ISO)
sulfadimethoxine  (EXP)
sulindac sulfide  (ISO)
sunitinib  (ISO)
T-2 toxin  (ISO)
tebuconazole  (ISO)
temozolomide  (ISO)
Tesaglitazar  (EXP)
tetrachloroethene  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
topotecan  (ISO)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
Triptolide  (EXP)
tris(2-butoxyethyl) phosphate  (ISO)
troglitazone  (EXP)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)
zidovudine  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA,ISO,ISS)
cytosol  (IEA,ISO)
membrane  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. A novel gene "Niban" upregulated in renal carcinogenesis: cloning by the cDNA-amplified fragment length polymorphism approach. Majima S, etal., Jpn J Cancer Res 2000 Sep;91(9):869-74.
2. Gene Data Set MGD Curation, June 12, 2002
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16949643   PMID:17588536   PMID:19199708   PMID:19946888   PMID:23533145  


Genomics

Comparative Map Data
Niban1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81366,224,219 - 66,377,728 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1366,224,021 - 66,377,724 (+)EnsemblGRCr8
mRatBN7.21363,674,240 - 63,827,748 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1363,674,171 - 63,827,729 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1366,287,539 - 66,433,831 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01367,565,074 - 67,711,810 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01364,821,661 - 64,968,197 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1365,578,185 - 65,724,471 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive1365,792,572 - 65,938,860 (+)NCBILyon_Normotensive
Lyon_Hypertensive1365,728,802 - 65,875,081 (+)NCBILyon_Hypertensive
F344_StmMcwi1365,783,698 - 65,929,956 (+)NCBIF344_StmMcwi
Rnor_6.01368,949,665 - 69,101,600 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1368,949,665 - 69,101,588 (+)Ensemblrn6Rnor6.0
Rnor_5.01373,927,637 - 74,076,144 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41366,467,073 - 66,620,137 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1363,599,277 - 63,749,201 (+)NCBICelera
RGSC_v3.11366,481,152 - 66,634,217 (+)NCBI
Cytogenetic Map13q21NCBI
NIBAN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381184,791,032 - 184,974,508 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1184,790,724 - 184,974,611 (-)Ensemblhg38GRCh38
GRCh371184,760,166 - 184,943,640 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361183,026,789 - 183,210,305 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341181,491,824 - 181,675,339NCBI
Celera1157,871,147 - 158,054,385 (-)NCBICelera
Cytogenetic Map1q25.3NCBI
HuRef1155,995,721 - 156,179,017 (-)NCBIHuRef
CHM1_11186,182,688 - 186,365,427 (-)NCBICHM1_1
T2T-CHM13v2.01184,154,228 - 184,331,389 (-)NCBIT2T-CHM13v2.0
Niban1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391151,447,215 - 151,597,690 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1151,446,937 - 151,597,690 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381151,571,373 - 151,721,432 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1151,571,186 - 151,721,939 (+)Ensemblmm10GRCm38
MGSCv371153,418,503 - 153,566,477 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361153,333,752 - 153,481,254 (+)NCBIMGSCv36mm8
Celera1153,991,857 - 154,144,552 (+)NCBICelera
Cytogenetic Map1G1- G2NCBI
cM Map164.21NCBI
Niban1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540623,437,430 - 23,523,307 (-)NCBIChiLan1.0ChiLan1.0
NIBAN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2164,749,714 - 64,926,716 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1164,432,803 - 64,610,274 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01160,320,707 - 160,497,649 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11164,475,271 - 164,651,377 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1164,479,202 - 164,581,494 (-)EnsemblpanPan2panpan1.1
NIBAN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1718,021,782 - 18,234,759 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl718,024,578 - 18,235,236 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha717,606,389 - 17,819,053 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0717,755,746 - 17,967,535 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl717,758,289 - 17,967,642 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1717,663,647 - 17,818,513 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0717,772,001 - 17,984,763 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0717,902,539 - 18,115,903 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Niban1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934487,331,860 - 87,472,938 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364815,178,617 - 5,319,698 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364815,178,595 - 5,319,681 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NIBAN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9126,007,493 - 126,172,579 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.19126,007,493 - 126,172,579 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29138,453,586 - 138,618,115 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NIBAN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12544,410,245 - 44,582,260 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2544,410,318 - 44,585,424 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605545,620,302 - 45,794,376 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Niban1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248148,600,129 - 8,795,038 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Niban1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11031,070,183 - 31,155,502 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Niban1
1586 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:100
Count of miRNA genes:84
Interacting mature miRNAs:94
Transcripts:ENSRNOT00000003320
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134863963493639634Rat
10755495Bp387Blood pressure QTL 3873.78arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133721624190057603Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1338975045103588154Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133992469384924693Rat
71119Thym2Thymus enlargement QTL 23.8thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)134874981487285480Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132485392569853925Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133996821183286298Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13742179187286911Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133708798382087983Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)134098358585983585Rat
724564Uae11Urinary albumin excretion QTL 115.7urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)134735425894285672Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
738027Lnnr6Liver neoplastic nodule remodeling QTL 63.3liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)1365613454109350286Rat
738026Lnnr5Liver neoplastic nodule remodeling QTL 53.29liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)136242459288113509Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132624480871244808Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133379409678794096Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133992469384924693Rat
1576318Schws5Schwannoma susceptibility QTL 50.0351nervous system integrity trait (VT:0010566)post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)1364497900109350286Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133483494779834947Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133981472684814726Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133996821184968211Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132624480871244808Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1364375743109350286Rat
11530006Niddm72Non-insulin dependent diabetes mellitus QTL 720.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)133828629883286298Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000003320   ⟹   ENSRNOP00000003320
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1366,224,138 - 66,377,724 (+)Ensembl
mRatBN7.2 Ensembl1363,674,237 - 63,827,729 (+)Ensembl
Rnor_6.0 Ensembl1368,949,665 - 69,101,588 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000110589   ⟹   ENSRNOP00000078571
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1366,224,138 - 66,373,964 (+)Ensembl
mRatBN7.2 Ensembl1363,674,171 - 63,823,984 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112956   ⟹   ENSRNOP00000087560
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1366,224,138 - 66,345,793 (+)Ensembl
mRatBN7.2 Ensembl1363,674,171 - 63,795,809 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000133173   ⟹   ENSRNOP00000105289
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1366,224,021 - 66,377,724 (+)Ensembl
RefSeq Acc Id: NM_022242   ⟹   NP_071578
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81366,224,219 - 66,374,753 (+)NCBI
mRatBN7.21363,674,240 - 63,824,773 (+)NCBI
Dahl_SR_JrHsd1365,578,185 - 65,724,471 (+)NCBI
Lyon_Normotensive1365,792,572 - 65,938,860 (+)NCBI
Lyon_Hypertensive1365,728,802 - 65,875,081 (+)NCBI
F344_StmMcwi1365,783,698 - 65,929,956 (+)NCBI
Rnor_6.01368,949,665 - 69,101,600 (+)NCBI
Rnor_5.01373,927,637 - 74,076,144 (+)NCBI
RGSC_v3.41366,467,073 - 66,620,137 (+)RGD
Celera1363,599,277 - 63,749,201 (+)RGD
Sequence:
RefSeq Acc Id: XM_039091055   ⟹   XP_038946983
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81366,343,019 - 66,377,728 (+)NCBI
mRatBN7.21363,793,023 - 63,827,748 (+)NCBI
Protein Sequences
Protein RefSeqs NP_071578 (Get FASTA)   NCBI Sequence Viewer  
  XP_038946983 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAB15951 (Get FASTA)   NCBI Sequence Viewer  
  EDM09569 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000003320.4
  ENSRNOP00000078571
GenBank Protein Q9ESN0 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_071578   ⟸   NM_022242
- UniProtKB: Q9ESN0 (UniProtKB/Swiss-Prot),   A6ICS8 (UniProtKB/TrEMBL),   A0A8I5ZNB0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000003320   ⟸   ENSRNOT00000003320
RefSeq Acc Id: XP_038946983   ⟸   XM_039091055
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000087560   ⟸   ENSRNOT00000112956
Ensembl Acc Id: ENSRNOP00000078571   ⟸   ENSRNOT00000110589
Ensembl Acc Id: ENSRNOP00000105289   ⟸   ENSRNOT00000133173

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9ESN0-F1-model_v2 AlphaFold Q9ESN0 1-937 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698886
Promoter ID:EPDNEW_R9411
Type:multiple initiation site
Name:Fam129a_1
Description:family with sequence similarity 129, member A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01368,949,630 - 68,949,690EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:71088 AgrOrtholog
BioCyc Gene G2FUF-17928 BioCyc
Ensembl Genes ENSRNOG00000002403 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000003320.7 UniProtKB/Swiss-Prot
  ENSRNOT00000110589 ENTREZGENE
InterPro Niban-like UniProtKB/Swiss-Prot
KEGG Report rno:63912 UniProtKB/Swiss-Prot
NCBI Gene 63912 ENTREZGENE
PANTHER PROTEIN NIBAN 1 UniProtKB/Swiss-Prot
  PTHR14392 UniProtKB/Swiss-Prot
PhenoGen Niban1 PhenoGen
RatGTEx ENSRNOG00000002403 RatGTEx
UniProt A0A8I5ZNB0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GG41_RAT UniProtKB/TrEMBL
  A0ABK0LHW6_RAT UniProtKB/TrEMBL
  A6ICS8 ENTREZGENE, UniProtKB/TrEMBL
  NIBAN_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-29 Niban1  niban apoptosis regulator 1  Fam129a  family with sequence similarity 129, member A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-02-23 Fam129a  family with sequence similarity 129, member A  Niban  niban protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-07-09 Niban  niban protein      Symbol and Name updated to reflect Human and Mouse nomenclature 70877 APPROVED

RGD Curation Notes
Note Type Note Reference