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Gene: Pigm (phosphatidylinositol glycan anchor biosynthesis, class M) Rattus norvegicus

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Symbol:

Pigm

Name:

phosphatidylinositol glycan anchor biosynthesis, class M

RGD ID:

71041

Description:

Enables dol-P-Man:GlcN-acyl-PI alpha-1,4-mannosyltransferase activity. Involved in GPI anchor biosynthetic process. Part of glycosylphosphatidylinositol-mannosyltransferase I complex. Orthologous to human PIGM (phosphatidylinositol glycan anchor biosynthesis class M); PARTICIPATES IN glycosylphosphatidylinositol anchor biosynthetic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

GPI alpha-1,4-mannosyltransferase I, catalytic subunit; GPI mannosyltransferase 1; GPI mannosyltransferase I; GPI-MT-I; LOC103694910; phosphatidylinositol glycan, class M; phosphatidylinositol-glycan biosynthesis class M protein; PIG-M mRNA for mannosyltransferase

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	87,370,693 - 87,374,390 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	87,368,359 - 87,376,206 (+)	Ensembl				GRCr8
mRatBN7.2	13	84,838,329 - 84,842,026 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	84,838,175 - 84,843,381 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	87,341,646 - 87,345,343 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	88,741,920 - 88,745,617 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	85,926,307 - 85,930,006 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	90,759,260 - 90,762,957 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	90,759,260 - 90,762,957 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	95,281,187 - 95,284,884 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	88,377,212 - 88,380,909 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	84,448,384 - 84,452,081 (+)	NCBI		Celera
RGSC_v3.1	13	88,566,095 - 88,569,793 (+)	NCBI
Cytogenetic Map	13	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Glycosylphosphatidylinositol Biosynthesis Defect 1 (ISO)

Venous Thrombosis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

4,4'-sulfonyldiphenol (ISO)

acetamide (EXP)

acrylamide (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

atrazine (ISO)

avobenzone (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

ethyl methanesulfonate (ISO)

furan (EXP)

gentamycin (EXP)

GSK-J4 (ISO)

hydrogen peroxide (ISO)

iron dichloride (ISO)

methyl methanesulfonate (ISO)

nickel atom (ISO)

nickel sulfate (ISO)

ozone (ISO)

paracetamol (ISO)

perfluorooctanoic acid (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

GPI anchor biosynthetic process (IBA,IDA,IEA,ISO)

Cellular Component

endoplasmic reticulum membrane (IEA,ISO,ISS)

glycosylphosphatidylinositol-mannosyltransferase I complex (IBA,IDA)

membrane (IEA)

Molecular Function

alpha-1,4-mannosyltransferase activity (IEA)

dol-P-Man:GlcN-acyl-PI alpha-1,4-mannosyltransferase activity (IDA,ISO)

glycosyltransferase activity (IEA)

GPI mannosyltransferase activity (IEA)

mannosyltransferase activity (IBA,IDA)

protein binding (IPI,ISO)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

glycosylphosphatidylinositol anchor biosynthetic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Mammalian PIG-X and yeast Pbn1p are the essential components of glycosylphosphatidylinositol-mannosyltransferase I.	Ashida H, etal., Mol Biol Cell. 2005 Mar;16(3):1439-48. doi: 10.1091/mbc.e04-09-0802. Epub 2005 Jan 5.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	PIG-M transfers the first mannose to glycosylphosphatidylinositol on the lumenal side of the ER.	Maeda Y, etal., EMBO J 2001 Jan 15;20(1-2):250-61.
4.	Gene Data Set	MGD Curation, June 12, 2002
5.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
7.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
8.	GOA pipeline	RGD automated data pipeline
9.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Pigm
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	87,370,693 - 87,374,390 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	87,368,359 - 87,376,206 (+)	Ensembl				GRCr8
mRatBN7.2	13	84,838,329 - 84,842,026 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	84,838,175 - 84,843,381 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	87,341,646 - 87,345,343 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	88,741,920 - 88,745,617 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	85,926,307 - 85,930,006 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	90,759,260 - 90,762,957 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	90,759,260 - 90,762,957 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	95,281,187 - 95,284,884 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	88,377,212 - 88,380,909 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	84,448,384 - 84,452,081 (+)	NCBI		Celera
RGSC_v3.1	13	88,566,095 - 88,569,793 (+)	NCBI
Cytogenetic Map	13	q24	NCBI

PIGM
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	160,024,953 - 160,031,990 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	160,024,953 - 160,031,990 (-)	Ensembl			hg38	GRCh38
GRCh37	1	159,994,743 - 160,001,780 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	158,264,086 - 158,268,407 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	156,812,769 - 156,814,821	NCBI
Celera	1	133,065,903 - 133,070,225 (-)	NCBI		Celera
Cytogenetic Map	1	q23.2	NCBI
HuRef	1	131,354,186 - 131,358,509 (-)	NCBI		HuRef
CHM1_1	1	161,392,783 - 161,397,106 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	159,162,027 - 159,169,067 (-)	NCBI		T2T-CHM13v2.0

Pigm
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	172,204,098 - 172,211,666 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	172,204,113 - 172,211,666 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	172,376,531 - 172,384,099 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	172,376,546 - 172,384,099 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	174,306,662 - 174,314,230 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	174,213,231 - 174,217,208 (+)	NCBI		MGSCv36	mm8
Celera	1	175,229,959 - 175,237,523 (+)	NCBI		Celera
Cytogenetic Map	1	H3	NCBI
cM Map	1	79.73	NCBI

Pigm
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	11,818,604 - 11,819,872 (-)	Ensembl
ChiLan1.0	NW_004955468	11,817,647 - 11,820,456 (-)	NCBI	ChiLan1.0	ChiLan1.0

PIGM
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	89,820,391 - 89,827,205 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	89,560,492 - 89,567,215 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	135,378,843 - 135,387,789 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	139,303,208 - 139,307,797 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2

PIGM
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	22,150,006 - 22,151,589 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	22,225,395 - 22,230,629 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	22,269,869 - 22,271,417 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	38	22,269,352 - 22,271,115 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UNSW_CanFamBas_1.0	38	22,570,098 - 22,575,352 (+)	NCBI		UNSW_CanFamBas_1.0

Pigm
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	6,156,494 - 6,158,603 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936740	596,072 - 597,343 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936740	595,932 - 597,964 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PIGM
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	4	90,461,507 - 90,464,500 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	98,432,754 - 98,434,851 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PIGM
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	3,913,163 - 3,914,853 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	3,913,336 - 3,914,607 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	2,969,696 - 2,972,124 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pigm
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624794	1,220,121 - 1,221,392 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624794	1,220,004 - 1,222,259 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Pigm
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	51,490,760 - 51,494,205 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Pigm
10 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	206
Count of miRNA genes:	151
Interacting mature miRNAs:	172
Transcripts:	ENSRNOT00000010551
Prediction methods:	Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
738027	Lnnr6	Liver neoplastic nodule remodeling QTL 6	3.3		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	65613454	109350286	Rat
7387280	Uae43	Urinary albumin excretion QTL 43	5.69	0.4174	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	68983334	109350286	Rat
1298066	Bp159	Blood pressure QTL 159		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	48639634	93639634	Rat
738026	Lnnr5	Liver neoplastic nodule remodeling QTL 5	3.29		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	62424592	88113509	Rat
10755495	Bp387	Blood pressure QTL 387	3.78		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37216241	90057603	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	67635937	109350286	Rat
1576318	Schws5	Schwannoma susceptibility QTL 5		0.0351	nervous system integrity trait (VT:0010566)	post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)	13	64497900	109350286	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
8655951	Rf63	Renal function QTL 63	12.2		blood urea nitrogen amount (VT:0005265)	plasma urea nitrogen level (CMO:0000586)	13	71610804	109350286	Rat
4889606	Gluco63	Glucose level QTL 63	2.86	0.003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	83286150	109350286	Rat
8655945	Rf61	Renal function QTL 61	3.6		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	13	71610804	89333251	Rat
1331783	Bp221	Blood pressure QTL 221	3.72886		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	71610804	89333251	Rat
8655959	Pur32	Proteinuria QTL 32	8.4		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	72984506	99745408	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	67635937	109350286	Rat
1300166	Kidm6	Kidney mass QTL 6	3.93		kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	13	71610804	89333251	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	64375743	109350286	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
724564	Uae11	Urinary albumin excretion QTL 11	5.7		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	13	47354258	94285672	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	67635937	109350286	Rat

Markers in Region

AI644422

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	84,837,936 - 84,838,076 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	90,758,868 - 90,759,007	NCBI	Rnor6.0
Rnor_5.0	13	95,280,795 - 95,280,934	UniSTS	Rnor5.0
RGSC_v3.4	13	88,376,820 - 88,376,959	UniSTS	RGSC3.4
Celera	13	84,447,992 - 84,448,131	UniSTS
Cytogenetic Map	13	q24	UniSTS

RH141295

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	84,840,451 - 84,840,642 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	90,761,383 - 90,761,573	NCBI	Rnor6.0
Rnor_5.0	13	95,283,310 - 95,283,500	UniSTS	Rnor5.0
RGSC_v3.4	13	88,379,335 - 88,379,525	UniSTS	RGSC3.4
Celera	13	84,450,507 - 84,450,697	UniSTS
RH 3.4 Map	13	556.9	UniSTS
Cytogenetic Map	13	q24	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
10	12	61	132	57	60	41	86	41	298	168	11	123	71	73	19	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_024144	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB028126	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC112551	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000010551 ⟹ ENSRNOP00000010551

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	87,370,315 - 87,375,718 (+)	Ensembl
mRatBN7.2 Ensembl	13	84,838,175 - 84,843,381 (+)	Ensembl
Rnor_6.0 Ensembl	13	90,759,260 - 90,762,957 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000150620 ⟹ ENSRNOP00000109897

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	87,370,606 - 87,375,532 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000163100 ⟹ ENSRNOP00000099598

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	87,368,359 - 87,376,206 (+)	Ensembl

RefSeq Acc Id:

NM_024144 ⟹ NP_077058

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	87,370,693 - 87,374,390 (+)	NCBI
mRatBN7.2	13	84,838,329 - 84,842,026 (+)	NCBI
Rnor_6.0	13	90,759,260 - 90,762,957 (+)	NCBI
Rnor_5.0	13	95,281,187 - 95,284,884 (+)	NCBI
RGSC_v3.4	13	88,377,212 - 88,380,909 (+)	RGD
Celera	13	84,448,384 - 84,452,081 (+)	RGD

Sequence:

show sequence

GTGGGCGAGTGGAGTGAGCCGGAGGAGGGTTAGAGAGAGGGGCGCAGCGTGGACCCGGGGCCGG
GCCGGTGGCCCGCACTCAGACCATGAGCTACACCAAGCACTGGGGAGAATGGTTCCTGAACCTG
CGGGTGCCGCCCGCCGGGGTGTTCGGCGTGGCCTTCCTGGCCCGGGTCGCCCTGGTTTTCTACG
GTGTCTTTCAGGACCGGACTCTGCTCGTGAGGTACACCGACATAGACTACCACGTGTTCACGGA
CGCCGCGCGTTTCGTCACGGAGGGGCGCTCCCCTTACCTGAGGGCGACGTATCGCTACACGCCG
CTCCTGAGTTGGCTCCTCACTCCCAACGTCTACCTCAGCGAACTCTTTGGCAAGTTTCTCTTCA
TCAGCTGCGACCTCCTCACCGCCTTCCTCTTGTACCGCCTGCTGCTGCTCAAGGGGCTGGGGCG
CCGCCAGGCCTGTGGCTACTGCGTCTTCTGGCTACTTAACCCCTTACCCATGGCGGTGTCCAGC
CGAGGCAACGCAGACTCCATCGTCGCCTCCCTGGTGCTTACGACCCTGTACTTAATAGAGAAAC
GACTCATCGCGTGTGCCGCGGTGTTCTATGGCTTCGCGGTGCACATGAAGATGTATCCGGTGAC
CTACATCCTCCCCATAGCGCTCCATTTGCGTCCCGAGCGCGACAGTGACGAGGGGCTCCGGCTA
GCCCGGTACTCTTTCCAGGCTCGTTTGTACGACTTCCTGAAGAGGCTGTGTAGCTGGGCTGTGC
TGCTTTTCGTAGCAATTGCAGGACTCACTTTTTTGGCCCTGAGCTTCGGTTTTTACTATAAGTA
CGGTTGGGAGTTTCTGGAGCACACCTACCTTTATCACCTGACTCGGAGGGATATCCGCCATAAC
TTTTCTCCATATTTCTATATGCTGTATCTGACTGCAGAGAGCAAGTGGAGTTTCACGCTGGGGA
TCGCTGCGTTCCTGCCACAGTTCATCTTGCTTTCAGCCGCGTCTTTTGCCTATTACAGAGACCT
TGTCTTCTGTTGTTTTCTTCATACATCCATTTTTGTGACTTTTAACAAAGTCTGCACTTCTCAG
TACTTTCTTTGGTACCTCTGCCTTCTGCCTCTGGTGATGCCACTAGTGAGGATGCCTTGGAAGA
GAGCCGTGGTCCTCTTAATGTTGTGGTTCATAGGACAGGCCTTATGGCTGGCTCCTGCATACGT
TCTAGAGTTTCAAGGAAAGAACACCTTCCTGTTTATTTGGTTAGCTGGTTTGTTCTTCCTTCTG
ATCAACTGTTCTATACTGATTCAGATTATTTCCCATTACAAGGAGGACCGCCTAACCGAGAGAA
TCAAATACGACTAATGTGTCTGGATCTTCTGTAGCATTCTGATGATTCCATGTGGACTAGAAAA
GCTTTGTAATTTTTTTCCTCCCTGAGCACTCTAAGCACTCTAGTGAAAGTTTCCTTGTTCCAAT
AGAAATTAAAACCGGTGTTGGCCTTACATATAAAGGGGACCAATAACTGAGGTCCATCCTTTAG
AAGTCTTAGGACTCTTGTTTGTTTGTTGAGAAGTAAATCTTTGTTTGACTGCTGAAAAGCTGGT
GAAGCTAGAAGATGCTGAAATATTTTTGAACAGTAGAGGAATAGACATAAGGTCTCTGTCAGTT
TGTTCCTGTCACTGTGCTACTGTTGTACCTTCAGCCCCTGCCTTTTTTTTCCCTGCAGTTCTGA
CAGCTATGGACATTTACAAAGTTCCTACAGGACACCATTTTTACATATAAAGTATTAACAGTTC
CATGCTCAGTTGGGAAAGCTTTAAATTTTTGCATTAAATGTGGGGGCTTAGAAGAGAACTAATC
CAAAGAATTTAAATTGTGATCATGTATTTGTTTTGTAATTTAGTTTTTCAGCATTAGTACCAGT
GATATTCGTTTTATACAAAAAGATTAAATTTAAACTCCTCCATCTTTAGACCTGAGTTTAAACA
AAAGAAATTGGACATTAGCATGTATATGCTTGCCCTTTTTCTAATTCCTAGAAAGATTTTTCTT
CTAGAGTTTAATTTGAGTATTGTCTGTTGTAAAAGTAGTAGACTTTAGATGGTAAAGCCAAAGT
TTTGGGTATGACGTCATTTGCTCTATTCTGGCTTTATCGTCTAAATTGTTACAATAGTGAACAT
TGTTGATAAGGCATAAATCCTACACTCTGAAAATCCCCTGATAGAAAGGATGATTTTTGAGGAA
GACTCCTGTGAAGCATAAGTGGTGTCATTGTTTGGGCTCACTGCTCTAGATCAAGAGGTTGCAA
GGGACTTGAGGAATTACAGAAATGAGGCTGTGGTAGGCAGATCTTTTTATGTATCACTAGAAGT
AAATACAGTGATAGGGAAATACTTTCTCAACTGTATGAATAAACATTCTAAAATTTTTTTAGAA
AACATAGAGCCCATCTATGTTGAGGGCTTTCTAACATTTGAAGATGTAGCAGAAATAGATGATT
ATGATTTTGTGATCATGTTTTTTTTTTTTCAAAAAAAAAATTGTTTTTTTTCCAGAGTCAACAA
CAACAAAAAACTCCTGAAAAATAAATACTGCTCCAGAAAAGTAGTAATTTTTTTCCTGTTAGGG
CAAGCCTAAAAAAAGCCTTTGTTGATAAAATATTTAGGGCTGCTCATAATTAAAAATTCTATTG
TGGCAGCATTTCTTTGCTGGATTCCTTTTGGGATTGGCCTTAGAAGAAAAGGCTTTCTGTTGCT
TACTGTGTGAAGAAAAGTGGTCAATTGTAGAAAACAATGGCCTTTCCTAAAATGTCAAAACCCA
TCCTTTTTATTAGCTCATAACAGCATACTGCTTAAGACAGTTTAAGTAGTAGCTTTCCAATTTA
TGGCACATGAACCTTTTAAAATTATTATGGGGATTGAAACCAGGGCCTCAAACTTTCTAGGCAA
GTAGTCTGTCTACCACTGAGCAATGTATCCAGCCCCAAGTGAAATTTTGAAATGAAAATTTGAG
CAAGGAAAGTATATTCGTGTATTTGTATAGGCCTGGCTTTTCTTGCTCTTTTAGACAGTCCAGG
CTGGTCTTAAACTTTCTTTGTTTGCCCAAGATAAACTTGAACTCCTGACCTTCAGGCCTCTACC
TCCTAAGAGCTGAGATTACAGTCCTGTGCCATTGTGCCTGGCTCAGAAAATCTTTATTAAAGAA
ACGAAAGTATTTCCTAAGAGATGCAGATGTTTTGCAGTTAATCTGCTGCAAACCTTTATTTTTT
TATTTGCTTTATATGTATAGGTATTTTGCATATATGTCTGTGCACCGTGTGCATTCCTAGTGCA
CAAGGTGGCCAGAAGAGAACATTGGCTATACTAGAACAGATGGTTTTGAGCCACGATGTTGGTG
GGTGCTAGGAATCCAACCTGAGAGTCTTCTGGAAGAGCTGCTAGCACTCTTAACCACTGAGCCA
ACTCTCAAGCCCCCTGCTGCAAAAACATTCAGTAAGTTAAGTGGAGAAATGACTTGATCTTTTT
GGGGTTTACTTCTGTTTCGCAACTTTTAAAAGTTTTATTTAGAGAAGAGGCACACATTCCATGT
CCTGTGTATGGAGGTCAGATGCAACATAGGACAACTGGTGGTGGTCGATTTTCCTCTTTCTCTT
ATGCTAACCCTGGGATCAAACTTGGGGCATCAGTCGTGGCAGCAGTACCTTC

hide sequence

Protein Sequences


Protein RefSeqs	NP_077058	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAB18566	(Get FASTA)	NCBI Sequence Viewer
	EDL94711	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000010551
	ENSRNOP00000010551.3
GenBank Protein	Q9EQY6	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_077058 ⟸ NM_024144

- UniProtKB:

Q9EQY6 (UniProtKB/Swiss-Prot), A6JG55 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSYTKHWGEWFLNLRVPPAGVFGVAFLARVALVFYGVFQDRTLLVRYTDIDYHVFTDAARFVTE
GRSPYLRATYRYTPLLSWLLTPNVYLSELFGKFLFISCDLLTAFLLYRLLLLKGLGRRQACGYC
VFWLLNPLPMAVSSRGNADSIVASLVLTTLYLIEKRLIACAAVFYGFAVHMKMYPVTYILPIAL
HLRPERDSDEGLRLARYSFQARLYDFLKRLCSWAVLLFVAIAGLTFLALSFGFYYKYGWEFLEH
TYLYHLTRRDIRHNFSPYFYMLYLTAESKWSFTLGIAAFLPQFILLSAASFAYYRDLVFCCFLH
TSIFVTFNKVCTSQYFLWYLCLLPLVMPLVRMPWKRAVVLLMLWFIGQALWLAPAYVLEFQGKN
TFLFIWLAGLFFLLINCSILIQIISHYKEDRLTERIKYD

hide sequence

Ensembl Acc Id:

ENSRNOP00000010551 ⟸ ENSRNOT00000010551

Ensembl Acc Id:

ENSRNOP00000099598 ⟸ ENSRNOT00000163100

Ensembl Acc Id:

ENSRNOP00000109897 ⟸ ENSRNOT00000150620

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9EQY6-F1-model_v2	AlphaFold	Q9EQY6	1-423	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699025

Promoter ID:

EPDNEW_R9550

Type:

initiation region

Name:

Pigm_1

Description:

phosphatidylinositol glycan anchor biosynthesis, class M

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	90,759,198 - 90,759,258	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:71041	AgrOrtholog
BioCyc Gene	G2FUF-17322	BioCyc
Ensembl Genes	ENSRNOG00000007735	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000010551	ENTREZGENE
	ENSRNOT00000010551.4	UniProtKB/Swiss-Prot
InterPro	PIG-M	UniProtKB/Swiss-Prot
KEGG Report	rno:79112	UniProtKB/Swiss-Prot
NCBI Gene	79112	ENTREZGENE
PANTHER	GPI MANNOSYLTRANSFERASE 1	UniProtKB/Swiss-Prot
	PTHR12886	UniProtKB/Swiss-Prot
Pfam	Mannosyl_trans	UniProtKB/Swiss-Prot
PhenoGen	Pigm	PhenoGen
RatGTEx	ENSRNOG00000007735	RatGTEx
UniProt	A6JG55	ENTREZGENE, UniProtKB/TrEMBL
	PIGM_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Pigm	phosphatidylinositol glycan anchor biosynthesis, class M	LOC103694910	GPI mannosyltransferase 1	Data merged from RGD:9267318	737654	PROVISIONAL
2014-08-25	LOC103694910	GPI mannosyltransferase 1			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-02-18	Pigm	phosphatidylinositol glycan anchor biosynthesis, class M	Pigm	phosphatidylinositol glycan, class M	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2002-07-09	Pigm	phosphatidylinositol glycan, class M			Symbol and Name updated to reflect Human and Mouse nomenclature	70877	APPROVED

RGD Curation Notes

Note Type	Note	Reference

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)