Maged1 (MAGE family member D1) - Rat Genome Database

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Gene: Maged1 (MAGE family member D1) Rattus norvegicus
Analyze
Symbol: Maged1
Name: MAGE family member D1
RGD ID: 70898
Description: Predicted to enable identical protein binding activity and transcription coactivator activity. Predicted to be involved in several processes, including negative regulation of epithelial cell proliferation; positive regulation of branching involved in ureteric bud morphogenesis; and regulation of gene expression. Predicted to act upstream of or within negative regulation of protein localization to nucleus; positive regulation of apoptotic signaling pathway; and regulation of transcription by RNA polymerase II. Predicted to be located in chromatin. Predicted to be part of protein-containing complex. Predicted to be active in nucleus. Orthologous to human MAGED1 (MAGE family member D1); PARTICIPATES IN neurotrophic factor signaling pathway; INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: MAGE-D1 antigen; melanoma antigen, family D, 1; melanoma-associated antigen D1; MGC93306; neurotrophin receptor-interacting MAGE homolog; Nrage; sertoli cell necdin-related gene protein 1; SNERG-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X63,416,464 - 63,423,167 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX63,416,466 - 63,423,112 (-)EnsemblGRCr8
mRatBN7.2X59,422,715 - 59,429,381 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX59,422,717 - 59,429,364 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX60,875,163 - 60,881,684 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X64,376,295 - 64,382,816 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X61,942,695 - 61,949,217 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X63,803,194 - 63,809,715 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX63,803,189 - 63,809,861 (-)Ensemblrn6Rnor6.0
Rnor_5.0X64,712,956 - 64,719,477 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X82,054,042 - 82,060,563 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX59,851,634 - 59,858,155 (-)NCBICelera
RGSC_v3.1X82,127,335 - 82,133,978 (-)NCBI
Cytogenetic MapXq22NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP,ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-fluorouracil  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
azathioprine  (ISO)
Benoxacor  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Butylbenzyl phthalate  (ISO)
carbon nanotube  (ISO)
chloropicrin  (ISO)
choline  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
cocaine  (ISO)
columbamine  (ISO)
copper(II) sulfate  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dicrotophos  (ISO)
disodium selenite  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
fenthion  (ISO)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
L-methionine  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
menadione  (ISO)
methapyrilene  (ISO)
methotrexate  (ISO)
microcystin-LR  (ISO)
mitoxantrone  (ISO)
naled  (ISO)
okadaic acid  (ISO)
oxaliplatin  (EXP)
paracetamol  (EXP,ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
quercetin  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
testosterone  (ISO)
thapsigargin  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP,ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (IEA,ISO,ISS)
cytoplasm  (IEA)
cytosol  (TAS)
nucleus  (IBA,IEA,ISO,ISS)
plasma membrane  (IEA)
protein-containing complex  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Gene Data Set MGD Curation, June 12, 2002
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. GOA pipeline RGD automated data pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. NRAGE, a p75 neurotrophin receptor-interacting protein, induces caspase activation and cell death through a JNK-dependent mitochondrial pathway. Salehi AH, etal., J Biol Chem 2002 Dec 13;277(50):48043-50.
9. NRAGE, a novel MAGE protein, interacts with the p75 neurotrophin receptor and facilitates nerve growth factor-dependent apoptosis. Salehi AH, etal., Neuron 2000 Aug;27(2):279-88.
10. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:11014239   PMID:11084035   PMID:12598531   PMID:15878242   PMID:15911347   PMID:15930293   PMID:17488777   PMID:19268530   PMID:20300063   PMID:20595047   PMID:23717400   PMID:25416956  
PMID:30361391   PMID:34755671   PMID:36585447  


Genomics

Comparative Map Data
Maged1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X63,416,464 - 63,423,167 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX63,416,466 - 63,423,112 (-)EnsemblGRCr8
mRatBN7.2X59,422,715 - 59,429,381 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX59,422,717 - 59,429,364 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX60,875,163 - 60,881,684 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X64,376,295 - 64,382,816 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X61,942,695 - 61,949,217 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X63,803,194 - 63,809,715 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX63,803,189 - 63,809,861 (-)Ensemblrn6Rnor6.0
Rnor_5.0X64,712,956 - 64,719,477 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X82,054,042 - 82,060,563 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX59,851,634 - 59,858,155 (-)NCBICelera
RGSC_v3.1X82,127,335 - 82,133,978 (-)NCBI
Cytogenetic MapXq22NCBI
MAGED1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X51,803,076 - 51,902,354 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX51,803,007 - 51,902,357 (+)Ensemblhg38GRCh38
GRCh37X51,546,172 - 51,645,450 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X51,562,895 - 51,662,190 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34X51,469,733 - 51,478,484NCBI
CeleraX56,085,672 - 56,184,754 (-)NCBICelera
Cytogenetic MapXp11.22NCBI
HuRefX48,983,076 - 49,081,965 (+)NCBIHuRef
CHM1_1X51,620,064 - 51,719,373 (+)NCBICHM1_1
T2T-CHM13v2.0X51,074,768 - 51,174,050 (+)NCBIT2T-CHM13v2.0
Maged1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X93,579,080 - 93,585,631 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX93,579,080 - 93,585,749 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38X94,535,474 - 94,542,025 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX94,535,474 - 94,542,143 (-)Ensemblmm10GRCm38
MGSCv37X91,780,813 - 91,787,413 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36X90,788,193 - 90,794,793 (-)NCBIMGSCv36mm8
CeleraX81,462,775 - 81,469,541 (-)NCBICelera
Cytogenetic MapXC3NCBI
cM MapX41.56NCBI
Maged1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555432,975,259 - 3,052,504 (+)Ensembl
ChiLan1.0NW_0049555432,939,960 - 3,052,442 (+)NCBIChiLan1.0ChiLan1.0
MAGED1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X53,192,082 - 53,291,363 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X53,195,664 - 53,294,968 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X43,999,576 - 44,098,848 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X51,893,306 - 51,992,850 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX51,984,080 - 51,992,850 (+)EnsemblpanPan2panpan1.1
MAGED1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X44,395,091 - 44,458,705 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX44,395,015 - 44,458,705 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_TashaX36,039,038 - 36,102,501 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0X44,521,320 - 44,584,780 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX44,507,586 - 44,584,775 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X44,356,467 - 44,419,928 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X44,514,463 - 44,577,911 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X44,750,886 - 44,814,350 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Maged1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X37,067,532 - 37,166,211 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936909585,206 - 592,644 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936909493,998 - 592,649 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAGED1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX45,258,829 - 45,329,272 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1X45,258,761 - 45,329,282 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X50,632,319 - 50,702,990 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MAGED1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X48,523,139 - 48,629,837 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX48,621,533 - 48,630,306 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660862,252,727 - 2,359,760 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Maged1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624981222,344 - 233,078 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462498153,502 - 229,889 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Maged1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1X88,967,130 - 88,973,830 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Maged1
45 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:180
Count of miRNA genes:132
Interacting mature miRNAs:143
Transcripts:ENSRNOT00000009870
Prediction methods:Microtar, Miranda, Pita, Pita,Microtar, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX45182909117740458Rat
70221Bp56Blood pressure QTL 564.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X6103585667175160Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X4493088389930883Rat

Markers in Region
Maged1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X59,422,747 - 59,422,920 (+)MAPPERmRatBN7.2
Rnor_6.0X63,803,227 - 63,803,399NCBIRnor6.0
Rnor_5.0X64,712,989 - 64,713,161UniSTSRnor5.0
RGSC_v3.4X82,054,075 - 82,054,247UniSTSRGSC3.4
CeleraX59,851,667 - 59,851,839UniSTS
Cytogenetic MapXq31UniSTS
AA998497  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8X63,416,500 - 63,416,900 (+)Marker Load Pipeline
mRatBN7.2X59,422,751 - 59,423,151 (+)MAPPERmRatBN7.2
Rnor_6.0X63,803,231 - 63,803,630NCBIRnor6.0
Rnor_5.0X64,712,993 - 64,713,392UniSTSRnor5.0
RGSC_v3.4X82,054,079 - 82,054,478UniSTSRGSC3.4
CeleraX59,851,671 - 59,852,070UniSTS
Cytogenetic MapXq31UniSTS
UniSTS:546850  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X59,426,181 - 59,427,714 (+)MAPPERmRatBN7.2
Rnor_6.0X63,806,661 - 63,808,193NCBIRnor6.0
Rnor_5.0X64,716,423 - 64,717,955UniSTSRnor5.0
CeleraX59,855,101 - 59,856,633UniSTS
Cytogenetic MapXq31UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 69 59 6 333 169 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000009870   ⟹   ENSRNOP00000009870
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX63,416,466 - 63,423,112 (-)Ensembl
mRatBN7.2 EnsemblX59,422,717 - 59,429,364 (-)Ensembl
Rnor_6.0 EnsemblX63,803,189 - 63,809,861 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076311
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX63,803,968 - 63,806,465 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076858
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX59,424,983 - 59,426,020 (-)Ensembl
Rnor_6.0 EnsemblX63,805,462 - 63,806,499 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076938   ⟹   ENSRNOP00000068192
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX63,803,189 - 63,803,915 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000084632   ⟹   ENSRNOP00000075156
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX63,803,189 - 63,807,810 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000125382   ⟹   ENSRNOP00000106884
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX63,416,466 - 63,423,112 (-)Ensembl
RefSeq Acc Id: NM_053409   ⟹   NP_445861
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X63,416,464 - 63,422,985 (-)NCBI
mRatBN7.2X59,422,715 - 59,429,237 (-)NCBI
Rnor_6.0X63,803,194 - 63,809,715 (-)NCBI
Rnor_5.0X64,712,956 - 64,719,477 (-)NCBI
RGSC_v3.4X82,054,042 - 82,060,563 (-)RGD
CeleraX59,851,634 - 59,858,155 (-)RGD
Sequence:
RefSeq Acc Id: XM_039100114   ⟹   XP_038956042
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X63,416,464 - 63,423,080 (-)NCBI
mRatBN7.2X59,422,715 - 59,429,381 (-)NCBI
RefSeq Acc Id: XM_063280341   ⟹   XP_063136411
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X63,416,464 - 63,423,167 (-)NCBI
RefSeq Acc Id: NP_445861   ⟸   NM_053409
- UniProtKB: Q9JHZ6 (UniProtKB/Swiss-Prot),   Q66HP3 (UniProtKB/Swiss-Prot),   Q9QX92 (UniProtKB/Swiss-Prot),   Q9ES73 (UniProtKB/Swiss-Prot),   A6IQ11 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000075156   ⟸   ENSRNOT00000084632
Ensembl Acc Id: ENSRNOP00000009870   ⟸   ENSRNOT00000009870
Ensembl Acc Id: ENSRNOP00000068192   ⟸   ENSRNOT00000076938
RefSeq Acc Id: XP_038956042   ⟸   XM_039100114
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063136411   ⟸   XM_063280341
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000106884   ⟸   ENSRNOT00000125382
Protein Domains
MAGE

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9ES73-F1-model_v2 AlphaFold Q9ES73 1-775 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701845
Promoter ID:EPDNEW_R12366
Type:single initiation site
Name:Maged1_1
Description:MAGE family member D1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X63,806,442 - 63,806,502EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:70898 AgrOrtholog
BioCyc Gene G2FUF-2224 BioCyc
Ensembl Genes ENSRNOG00000006756 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000009870 ENTREZGENE
  ENSRNOT00000009870.7 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.10.1200 UniProtKB/Swiss-Prot
  1.10.10.1210 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7134252 IMAGE-MGC_LOAD
InterPro MAGE UniProtKB/Swiss-Prot
  MAGE_WH1 UniProtKB/Swiss-Prot
  MAGE_WH2 UniProtKB/Swiss-Prot
  MHD_dom UniProtKB/Swiss-Prot
KEGG Report rno:84469 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93306 IMAGE-MGC_LOAD
NCBI Gene 84469 ENTREZGENE
PANTHER PTHR11736 UniProtKB/Swiss-Prot
  PTHR11736:SF28 UniProtKB/Swiss-Prot
Pfam MAGE UniProtKB/Swiss-Prot
PhenoGen Maged1 PhenoGen
PROSITE MAGE UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000006756 RatGTEx
SMART MAGE UniProtKB/Swiss-Prot
UniProt A0ABK0LSF5_RAT UniProtKB/TrEMBL
  A6IQ11 ENTREZGENE, UniProtKB/TrEMBL
  A6IQ12_RAT UniProtKB/TrEMBL
  A6IQ13_RAT UniProtKB/TrEMBL
  MAGD1_RAT UniProtKB/Swiss-Prot
  Q66HP3 ENTREZGENE
  Q9ES73 ENTREZGENE
  Q9JHZ6 ENTREZGENE
  Q9QX92 ENTREZGENE
UniProt Secondary Q66HP3 UniProtKB/Swiss-Prot
  Q9JHZ6 UniProtKB/Swiss-Prot
  Q9QX92 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-30 Maged1  MAGE family member D1  Maged1  melanoma antigen, family D, 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-07-09 Maged1  melanoma antigen, family D, 1      Symbol and Name updated to reflect Human and Mouse nomenclature 70877 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_process induces cytosolic accumulation of cytochrome c, activation of Caspases-3, -9 and -7, and caspase-dependent cell death 729110