Advanced Search (OLGA)

Gene: St18 (ST18 C2H2C-type zinc finger transcription factor) Rattus norvegicus

Analyze

Symbol:

St18

Name:

ST18 C2H2C-type zinc finger transcription factor

RGD ID:

708566

Description:

Enables RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Predicted to be part of protein-DNA complex. Predicted to be active in nucleus. Orthologous to human ST18 (ST18 C2H2C-type zinc finger transcription factor); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

C2-HC type zinc finger protein r-MyT3; neural zinc finger factor 3; NZF-3; Nzf3; r-MyT3; ST18, C2H2C-type zinc finger; suppression of tumorigenicity 18; suppression of tumorigenicity 18 protein; suppression of tumorigenicity protein 18

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	17,369,383 - 17,701,094 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	17,371,000 - 17,458,676 (-)	Ensembl				GRCr8
mRatBN7.2	5	12,582,493 - 12,914,221 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	12,584,110 - 12,671,790 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	14,758,000 - 14,882,063 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	16,398,885 - 16,523,046 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	16,092,687 - 16,216,745 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	12,437,617 - 12,787,223 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	12,437,525 - 12,563,429 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	17,211,877 - 17,558,736 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	12,667,083 - 12,794,377 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	12,004,612 - 12,128,698 (-)	NCBI		Celera
RGSC_v3.1	5	12,667,789 - 12,757,054 (-)	NCBI
Cytogenetic Map	5	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP)

17beta-estradiol 3-benzoate (EXP)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

aldehydo-D-glucose (ISO)

amitrole (EXP)

ammonium chloride (EXP)

antirheumatic drug (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP)

cadmium sulfate (ISO)

Cuprizon (EXP)

cycloheximide (ISO)

cytarabine (ISO)

D-glucose (ISO)

epoxiconazole (ISO)

glucose (ISO)

kojic acid (ISO)

methapyrilene (ISO)

methimazole (EXP)

N-Nitrosopyrrolidine (ISO)

O-methyleugenol (ISO)

okadaic acid (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

succimer (ISO)

sulfadimethoxine (EXP)

Tesaglitazar (EXP)

testosterone (EXP,ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

interleukin-1-mediated signaling pathway (IEA,ISO)

interleukin-6-mediated signaling pathway (IEA,ISO)

negative regulation of cell population proliferation (IEA,ISO)

negative regulation of transcription by RNA polymerase II (IMP)

positive regulation of transcription by RNA polymerase II (IEA,ISO)

regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IBA,IEA)

tumor necrosis factor-mediated signaling pathway (IEA,ISO)

Cellular Component

nucleus (IBA,IEA,ISO)

protein-DNA complex (IEA,ISO)

Molecular Function

DNA binding (IDA,IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA,IEA)

DNA-binding transcription repressor activity, RNA polymerase II-specific (IC)

metal ion binding (IEA)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA,IEA,ISO)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IDA,IEA)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	X-MyT1, a Xenopus C2HC-type zinc finger protein with a regulatory function in neuronal differentiation.	Bellefroid EJ, etal., Cell 1996 Dec 27;87(7):1191-202.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Isolation and characterization of a novel member of the neural zinc finger factor/myelin transcription factor family with transcriptional repression activity.	Yee KS and Yu VC, J Biol Chem 1998 Feb 27;273(9):5366-74.

Additional References at PubMed

PMID:15489893	PMID:18676404	PMID:24509857

Genomics

Comparative Map Data

St18
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	17,369,383 - 17,701,094 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	17,371,000 - 17,458,676 (-)	Ensembl				GRCr8
mRatBN7.2	5	12,582,493 - 12,914,221 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	12,584,110 - 12,671,790 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	14,758,000 - 14,882,063 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	16,398,885 - 16,523,046 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	16,092,687 - 16,216,745 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	12,437,617 - 12,787,223 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	12,437,525 - 12,563,429 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	17,211,877 - 17,558,736 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	12,667,083 - 12,794,377 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	12,004,612 - 12,128,698 (-)	NCBI		Celera
RGSC_v3.1	5	12,667,789 - 12,757,054 (-)	NCBI
Cytogenetic Map	5	q12	NCBI

ST18
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	52,110,838 - 52,409,879 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	52,110,838 - 52,460,983 (-)	Ensembl			hg38	GRCh38
GRCh37	8	53,023,398 - 53,322,439 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	53,185,952 - 53,484,856 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	8	53,185,951 - 53,484,856	NCBI
Celera	8	49,013,896 - 49,312,800 (-)	NCBI		Celera
Cytogenetic Map	8	q11.23	NCBI
HuRef	8	48,491,480 - 48,790,797 (-)	NCBI		HuRef
CHM1_1	8	53,075,494 - 53,374,880 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	52,486,561 - 52,785,956 (-)	NCBI		T2T-CHM13v2.0

St18
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	6,557,455 - 6,931,164 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	6,557,455 - 6,931,164 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	6,487,231 - 6,860,940 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	6,487,231 - 6,860,940 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	6,720,132 - 6,851,021 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	6,720,132 - 6,851,021 (+)	NCBI		MGSCv36	mm8
Celera	1	6,710,574 - 6,841,534 (+)	NCBI		Celera
Cytogenetic Map	1	A1	NCBI
cM Map	1	1.89	NCBI

St18
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955454	11,713,162 - 11,924,284 (-)	Ensembl
ChiLan1.0	NW_004955454	11,715,538 - 12,016,396 (-)	NCBI	ChiLan1.0	ChiLan1.0

LOC100975471
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	67,739,768 - 67,875,568 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	43,464,812 - 43,608,444 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	48,528,831 - 48,832,588 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	45,913,225 - 46,056,607 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	45,913,225 - 46,016,468 (-)	Ensembl			panPan2	panpan1.1

ST18
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	29	3,971,851 - 4,266,642 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	29	3,974,157 - 4,080,067 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	29	4,414,287 - 4,559,855 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	29	4,041,053 - 4,100,323 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	29	4,041,055 - 4,167,048 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	29	3,970,494 - 4,116,072 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	29	4,195,680 - 4,341,349 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	29	4,270,696 - 4,416,286 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

LOC101965562
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	75,547,701 - 75,609,504 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936590	699,630 - 798,178 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936590	737,086 - 798,433 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ST18
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	77,897,737 - 78,002,009 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	77,707,143 - 78,002,016 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	84,961,281 - 85,183,932 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ST18
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	48,214,764 - 48,521,428 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	48,214,374 - 48,319,061 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666039	93,484,384 - 93,803,429 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

St18
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624735	3,239,871 - 3,341,499 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624735	2,987,832 - 3,343,680 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

St18
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	141,889,376 - 142,001,705 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in St18
3029 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	245
Count of miRNA genes:	169
Interacting mature miRNAs:	187
Transcripts:	ENSRNOT00000059625
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2293666	Bmd38	Bone mineral density QTL 38	4.4		femur size trait (VT:1000369)	femoral neck cortical cross-sectional area (CMO:0001702)	5	13731153	43590997	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	6922282	81330203	Rat
1300117	Hrtrt8	Heart rate QTL 8	3.49		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	8627230	52665523	Rat
7394712	Emca13	Estrogen-induced mammary cancer QTL 13			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	14606078	59606078	Rat
634305	Mamtr1	Mammary tumor resistance QTL 1		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	17576633	62576633	Rat
1578774	Tcas8	Tongue tumor susceptibility QTL 8	3.47		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	15707451	60707451	Rat
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	91770353	Rat
2312562	Pur18	Proteinuria QTL 18	2.6	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	5	6922282	37468560	Rat
8662454	Vetf3	Vascular elastic tissue fragility QTL 3	27.4		artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	5	7065535	74335773	Rat
1641903	Alcrsp3	Alcohol response QTL 3			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	17486080	62486080	Rat
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	87027358	Rat
631827	Alc4	Alcohol consumption QTL 4	3.5		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	5	12970480	25683802	Rat
2303577	Gluco47	Glucose level QTL 47	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	16520019	61520019	Rat
1641922	Alcrsp8	Alcohol response QTL 8			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	5	17486080	62486080	Rat
2313085	Bss59	Bone structure and strength QTL 59	2.9	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	5	8627230	53627230	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	9	26	159	59	58	27	32	27	6	179	88	11	134	40	90	31	13	13

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_153310	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763489	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763490	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763492	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593172	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593173	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593174	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109332	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287205	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287206	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287207	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287208	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287209	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF031942	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CO394514	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U67080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000059625 ⟹ ENSRNOP00000056380

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	17,371,000 - 17,458,676 (-)	Ensembl
mRatBN7.2 Ensembl	5	12,584,110 - 12,671,790 (-)	Ensembl
Rnor_6.0 Ensembl	5	12,439,234 - 12,563,429 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000091649 ⟹ ENSRNOP00000072462

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	12,437,525 - 12,541,019 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000092104 ⟹ ENSRNOP00000075382

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	17,371,000 - 17,436,386 (-)	Ensembl
mRatBN7.2 Ensembl	5	12,584,110 - 12,649,500 (-)	Ensembl
Rnor_6.0 Ensembl	5	12,439,941 - 12,526,962 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000137537 ⟹ ENSRNOP00000104593

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	17,371,000 - 17,450,206 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000159649 ⟹ ENSRNOP00000109462

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	17,375,300 - 17,458,676 (-)	Ensembl

RefSeq Acc Id:

NM_153310 ⟹ NP_695222

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	17,371,000 - 17,495,130 (-)	NCBI
mRatBN7.2	5	12,584,110 - 12,708,246 (-)	NCBI
Rnor_6.0	5	12,439,234 - 12,563,429 (-)	NCBI
Rnor_5.0	5	17,211,877 - 17,558,736 (-)	NCBI
RGSC_v3.4	5	12,667,083 - 12,794,377 (-)	RGD
Celera	5	12,004,612 - 12,128,698 (-)	RGD

Sequence:

show sequence

TCATATCATGGAAACTACCTTTCAAGGCAACAGCTTTAGTGTCTCCTGTCAGCACACCAGGGAG
GAGAGAAATAGAAAAGGAAACAAACACAAAAAACCATGACATCTCTTCTGTTCAAATTCAGTAG
CTGCTAGAAAAGATGGATGCAGAGGTTGAAGATAAAGCGTTGCATACTCTCTCAAAAGGAACCG
AAGTTCCAATGGATTCTCTGATCCCAGAGCTCAGGGTTGCATATGATTGCTCTATGGCGAAGAA
GAGGAGAGCTGAAGAGCAGGCATTGGGAGTGCCAGTTAACAAGAGGAAATCTCTGTTAATGAAA
CCCCGGCACTACAGCCCAGACATGGACTGCAAGGAAAACCCAGACAACAGGAATGAGGATGATG
GCCTAGAAACGAATGACCACTCCACTGCAGATGAAATCGTGGTAAAACCCATGGATAAGACTCT
TCATTTACCTGCACAAGAAAGCTCACTCCCCAAGGAAGACCAATACGCGTGTTATCCAGAGCTC
ATGGTCAAATCTCTGATGCATTTAGGTAAATTTGAAGAAAGTGAGTCTGTGCAGACCGTAGGTG
AGAACTTAAATGGCAACGGCATCCAGTCTCTAAAAGCAGAGTGTGATGAAGCAAATGAATGCTT
TATGGTTCATTCTGATGATGGAAGAGACAAAGTCCACCATTCCCAGCCACCTTTCTGCTCTTCC
GGTGACAGTGAGAGTGACTCTGACAATACAGAGAATGGGTGGGGCAGTGGCTCCAACTCTTCAG
AAGACACTGACACTCACAAAGGCCCCAAACGCAAGCTGACATACAATAGAAAGGACCTGCTGGA
AGTCCCTGAGATAAAAGCAGAAGATGACAAGTTTATCCCTTGCGAGAACAGGTGTGATTCTGAC
ACCAGTGGGAGAGACCCACAGAACTCTCACATGGAACCCTTGGCTGTGAAAGTCCAGCCTTCCT
TCCCAGAGGTTGAAGAGAGTGAGAGCCTGGCCACAGTAATAGCGGAGTCTGCTGAGGTGGAGAA
AGCGAAGGGGAGCCTGAGTTTGCTGGAACAGGCTATTGCCCTACAGGCTGAACGGGGTTCCGTC
TTCCATCACACCTACAAAGAGCTGGACCGATTTCTCCTGGACCACCTGGCAAGGCAACGGAGGC
AACCCAAGGTTACTGATGCCAGTGGAAGGCAAATCTTTAATAATAAACATTCACCAAGGCCTGA
AAGGAGGGAGGCTAAGTGCCCCATTCCTGGCTGTGACGGCACAGGGCACGTAACGGGGCTCTAC
CCCCACCACCGCAGCCTTTCTGGGTGCCCCCACAAAGTGCGAGTTCCTCTGGAAATTCTTGCCA
TGCATGAGAACGTACTCAAGTGTCCCACCCCAGGATGCACAGGAAGGGGACATGTGAACAGCAA
TCGCAACACTCACAGAAGTCTTTCTGGTTGTCCAATTGCTGCAGCTGAAAAGTTGGCAATGACC
CAGGACAAAAGTCAACTTGATTCTTCCCAGACTGGGCAGGGTCCTGAGCAGGCTCACAGGGTGA
ATTTAGTGAAGCAAATTGAATTTAACTTCCGCTCACAAGCCATCACCTCTCCAAGAGCCTCTGC
ATCAAAAGAACAAGAGAAGTTTGGCAAAGTACCATTTGATTATGCCAGTTTTGATGCACAAGTA
TTTGGTAAACGTCCGCTCCTACAAACAGGACAAGGACAAAAGGCACCACCATTTCCTGAATCAA
AGCATTTTTCAAATCCAGTGAAATTTTCTAATGGGCTGCCTAGTGCTGGCGCCCACACACAGAG
CACAGTCCGTGCCAGCTCTTATGGCCATGGTCAGTACAGTGAAGACACCCACATAGCAGCAGCT
GCTGCTATCCTGAACCTTTCCACCCGCTGCAGGGAAGCCACAGACATCCTCTCCAACAAACCGC
AAAGCCTGCGTGCCAAGGGAGCTGAGATAGAAGTGGATGAAAACGGCACGTTGGACTTAAGCAT
GAAAAAACATCGAATCCTCGACAAGTCTATACCCCCGACTTCCTCACACACTACAATTGCAACC
CCATCCTCATCCCCATTCAAAGCAAGCAGCCTTCTGGTCAATGCTGCCTTCTATCAGGCTCTCT
GTGACCAAGAAGGCTGGAATGTGCCTATCAACTATAGCAAATCCCACGGGAAGACAGAGGAGGA
GAAAGAGAAAGACCCTGTGAACTCCCTAGAAAATTTAGAGGAAAAAAAGTTTGCTGGAGAGGCC
TCTATTCCAAGTCCAAAGCCCAAGCTCCACACACGAGATCTCAAGAAAGAATTAATCACCTGCC
CCACGCCAGGGTGTGATGGAAGCGGCCATGTCACAGGCAACTATGCATCTCACCGCAGTGTCTC
TGGATGTCCTCTAGCAGATAAGACTCTGAAGTCCCTCATGGCTGCCAACTCTCAAGAGCTTAAG
TGTCCAACCCCGGGTTGTGATGGTTCTGGTCACGTGACTGGAAACTATGCCTCCCATAGAAGCT
TGTCTGGTTGCCCTCGTGCAAGGAAAGGTGGCATCAAAATGACCCCAACAAAGGAAGAAAAAGA
AGACTCTGAGCTTAGATGTCCTGTAATAGGATGTGACGGCCAAGGTCACATATCAGGTAAATAC
ACATCACACCGCACAGCTTCTGGCTGTCCTCTGGCTGCCAAGAGACAGAAGGAGAATCCCCTCA
ATGGGACCCCTCTCTCATGGAAACTGAACAAGCAAGAACTTCCCCACTGTCCTTTGCCAGGATG
CAATGGTCTGGGTCATGTAAACAACGTTTTTGTCACCCACAGGAGCTTATCCGGATGCCCTCTT
AATGCACAAGCTATCAAAAAAGTCAAGGTCTCTGAGGAACTAATGACCATCAAGCTCAAAGCAA
CTGGGGGTATTGAGGGTGATGAAGAAATTAGGCATCTGGATGAAGAAATAAAGGAACTGAATGA
ATCCAACCTTAAAATTGAAGCAGATATGATGAAACTTCAGACCCAGATAACATCTATGGAGAGC
AACTTGAAGACCATAGAGGAGGAGAACAAGCTTATAGAGCAGAGCAACGAGAGTCTACTGAAGG
AGCTGGCAGGGCTTAGCCAGGCTCTCATCTCCAGTCTTGCTGACATCCAGCTTCCACAGATGGG
TCCTATCAATGAGCAGAATTTTGAAGCATATGTAAATACTCTCACAGACATGTACAGCAATCTG
GAACGGGACTATTCCCCAGAATGCAAAGCTCTACTGGAAAGCATCAAGCAGGCAGTGAAAGGTA
TCCATGTGTAGGACAACAGTATGCAGGAAACGGAGGTCACTACAGCCATGAACTCCCACAGATC
CGCAGGAGACCAATACCCCTGGAGCCTGGAGGCTGTCCCCTGCGTTTATAATTGCAACATTGCA
CTAATTTTTCCCCAGTTGACATAAAAAAGAAAGAAAAACTATGATAAACTCTTTGGATTAAAAG
CAATGCAGTCAATTATTAGATCTCATTTATTTTCATATCTTTTTCTTTTCTTTCTTCATTGCAC
TCTTTATTTTGTAAAATATATGTAAAAATAAATGTGACATTTTATATTTTATTTATTACTAATC
AAAGAGTTTTTTTATCTTTTATCTGCATTTTGAAGTCTACCATATTTTTACAGGTGTGTTTATT
AATTTATCTTCTAATAGGATTTAAATAGAAATGCTGTTCTCAAATCAAATATCTTTCTGGGTTT
AAACGAGAAAAACAAAACAAAAAATGTGTAAGGGAAATCCCAGTGTCAGGACTACACTATGGTC
AAGCTTGGTTTCTACTGTGCACTTCCATTTCCCCTTTACTGGTTTTGTTTTTATAAGTGATTTT
TGGTAATGTGAGCTGTGAAGGATTATGAAGATAAATGGCGCCCACTAGTGGGAAATCAGCATTC
AAAAGCACAGGATGTTAGCTAACAGTGCACTCAGAACTTGATAGCAATAATTAAATAAAGTAGT
CAGCATAGTATTCC

hide sequence

RefSeq Acc Id:

XM_008763490 ⟹ XP_008761712

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	17,369,383 - 17,495,093 (-)	NCBI
mRatBN7.2	5	12,582,493 - 12,722,025 (-)	NCBI
Rnor_6.0	5	12,437,617 - 12,565,727 (-)	NCBI

Sequence:

show sequence

AAATATTAATCCATATTAAAATTAATAAACAACTAATACGTAAAACAAGGGCATAGAGCTTAAA
CATAACTACCAAAGTGATATTGATCAATAGTAAAGAATAAAATAATAATTTTATGATCTTAGTA
TTTCAAAAATTTAGTAGATGAAGGTTGGTGTGATCCTGAGGGAGAAAATTGGGGGGCAAAGAGT
GAGTGACAGCTGTTAGGTATGGCAAATCTCTTGAGGGTGATGAAAATATCTTGCATTGTAATTA
TTATGGCTGAATTGTGATTAAACTAAATAAACAATAAGATATATTTCATACCTTAATGAGGTTA
TTCTTTTTAATTCCTGATGCGACGTGACTTTGTTCAGTCATGTAATGTCTATTGGTGTTACCTA
ATTTGGTCAGGTCACTGAATTTTGCTAGAAATTCTCCTTGCTGTGTTATACCTGAGTATCACCC
TGTGTGTCATGTGATGTTTTCTGTACATTCCCAGGGTGGGAAGTTTTGCATTGGAAAGGTACTC
ACCTTGGACTGTTGTCTTTAAACAGCACAGTGAAATTGTGCACTGAGCAACTGAATGTGTCAAG
CACCAAATGTGTCACAGAATACCAATGAACTGATGCTGAATGTCACTTTAGAAAAGGAGGCAGA
TCTCAGAGCACCTGCCTACAGCCTTGTGGGGAATGTAACTACTCTAAAAGTTAGATTGTCAAGT
ATTTCTCTATGTGATATAGACCTATCTCTATGTGATATGTGACCAGCTTTTGTGACTAGCATGT
TTTTTTTTCTAAAACAGAATTGTGGATTCTAATATTGTAAGTGTGGCAGCAGGTGTCCTTAGGG
GAGAGTGGACTCCCAGGGAATGGGGCCCAGGACTGTGTCTGAGGTTTGTTGAGTTGTAAAATAT
GAAGTTTCAGGACTTTTTTCTCACTTTTTTCAGCTACCCTCATCCAGGGTCCACATTCCTTATT
AAATGTCTGTCTTTAAAGTAAGAGCAGAGTCTAGTTTTCCTCTGCTAGATATCTCCATAGTGCC
TTTTCTTAAAAGCAATGCAAAAGGTAAACTCTGGCTTCAAAGGTTTTGATTGTGGTTCAGCCCT
TTAAAGAAAAGGATGGTTTTATTAGTCAACATGAAATGGTGTAAGAAATACTTTTTAAAGTTTC
CAGGATAATATTTTGATCTCTTCCATTTCCTTTAATCCTGTGTGTTCTTGAAATGGCCCCAGTG
GACCTGGCAGTTTGATTAGTCATTCCTTTAAAACCAAGTGGGCTTGTGGCAGATTTTGAAGAAT
TGATTAATTTTTTCTGAGATTTACATTTTTAAATGCAGTTAGGAATAGAAAGTCTATGGAATAT
TCCCTTGGAGTCCGGAATAAAAGTACCCCTGTGGGGGGAAAGAGAGCCCTAATGAGAAAGGCAC
AACCTGCTGCGTGAGAGATGTGTATGTTCCTGTCCAATCCTGACAGCCAGTCATGGAAACAGGC
TCTGTGCCTGAACCCAGAGACTATTCTGTGTGCCACTCACAAGGAGGCTAAGCTCCACCCCAAA
GTGTGGCTGCCTTTGTCATTTTAATTGGTCTGTGTTTGTGAAGTGGGGCCTCTATTTACTTATA
GCTTGGGGCTTGTGTTTACCAAGCCTGGTGGAGGCCAAGTGACAGGCTCCTGCAAGCTCTCCTG
CTGTATCTTGAGGCACTTTTCTTTTCAGTATTGGTGCTGTCTAATTCGTGAGCTTCTGTGAAGC
AAGCGCAGGAGGGTACAAGGCCTACAGGGAGGAATTACACCTAATTACTCAAATAATTGCTAGG
CTGTTGCCTTCTTAGTCACTGAAAATAATTTCCAGGTCCCTGGCTTTTATAGATAGTCTTCTAG
AGGCAGGAGGACACAGCCCCCTTTTTAACTCAGCCCATTCACTCACAAAATCAGAACACTCGAG
CCTGCAAAATTAATAAGCACCACTTCCATTACATATATTTTAGGTTGTTGTTGCCGTGGCGATA
AAGTCAGGGACATTGAATCTCCTCTGTTGAGCCATTGTTATCATCCCTGGCCATCTGCTGCAGA
GGAGTGATATTCCATCTCATTTGCATGATGACTGATATATGGGCGGTTTGGAAGGACATATGCC
ACAGCAATCATGTGATGAAAATTAAAGTGAAAGTTTTGGGCCCAGAGCCGAAAAAAAATCTGTG
TGTGCGCATGAGGCTGTTGATGTGCAAATGTGGATCATATTGAGAAGGTCTGAATAGGGAGGTG
TGACGTAAGGAGGGCTACACGCAGGTGCTTATCTCCGAGCAGTCAAAGGCACTGGATGTCATAT
CATGGAAACTACCTTTCAAGGCAACAGCTTTAGTGTCTCCTGTCAGCACACCAGGGAGGAGAGA
AATAGTTTTGGAAACAAACACAAAAAAAGGCCCCAGTTCTGTGAGAGTCTTTGAAGGACTGTGT
CAATTCCATTGTATGTGGCTGGGTGCTCATACCAATCTAAGCCATGACATCTCTTCTGTTCAAA
TTCAGTAGCTGCTAGAAAAGATGGATGCAGAGGTTGAAGATAAAGCGTTGCATACTCTCTCAAA
AGGAACCGAAGTTCCAATGGATTCTCTGATCCCAGAGCTCAGGGTTGCATATGATTGCTCTATG
GCGAAGAAGAGGAGAGCTGAAGAGCAGGCATTGGGAGTGCCAGTTAACAAGAGGAAATCTCTGT
TAATGAAACCCCGGCACTACAGCCCAGACATGGACTGCAAGGAAAACCCAGACAACAGGAATGA
GGATGATGGCCTAGAAACGAATGACCACTCCACTGCAGATGAAATCGTGGTAAAACCCATGGAT
AAGACTCTTCATTTACCTGCACAAGAAAGCTCACTCCCCAAGGAAGACCAATACGCGTGTTATC
CAGAGCTCATGGTCAAATCTCTGATGCATTTAGGTAAATTTGAAGAAAGTGAGTCTGTGCAGAC
CGTAGGTGAGAACTTAAATGGCAACGGCATCCAGTCTCTAAAAGCAGAGTGTGATGAAGCAAAT
GAATGCTTTATGGTTCATTCTGATGATGGAAGAGACAAAGTCCACCATTCCCAGCCACCTTTCT
GCTCTTCCGGTGACAGTGAGAGTGACTCTGACAGTACAGAGAATGGGTGGGGCAGTGGCTCCAA
CTCTTCAGAAGACACTGACACTCACAAAGGCCCCAAACGCAAGCTGACATACAATAGAAAGGAC
CTGCTGGAAGTCCCTGAGATAAAAGCAGAAGATGACAAGTTTATCCCTTGCGAGAACAGGTGTG
ATTCTGACACCAGTGGGAGAGACCCACAGAACTCTCACATGGAACCCTTGGCTGTGAAAGTCCA
GCCTTCCTTCCCAGAGGTTGAAGAGAGTGAGAGCCTGGCCACAGTAATAGCGGAGTCTGCTGAG
GTGGAGAAAGCGAAGGGGAGCCTGAGTTTGCTGGAACAGGCTATTGCCCTACAGGCTGAACGGG
GTTCCGTCTTCCATCACACCTACAAAGAGCTGGACCGATTTCTCCTGGACCACCTGGCAAGGCA
ACGGAGGCAACCCAAGGTTACTGATGCCAGTGGAAGGCAAATCTTTAATAATAAACATTCACCA
AGGCCTGAAAGGAGGGAGGCTAAGTGCCCCATTCCTGGCTGTGACGGCACAGGGCACGTAACGG
GGCTCTACCCCCACCACCGCAGCCTTTCTGGGTGCCCCCACAAAGTGCGAGTTCCTCTGGAAAT
TCTTGCCATGCATGAGAACGTACTCAAGTGTCCCACCCCAGGATGCACAGGAAGGGGACATGTG
AACAGCAATCGCAACACTCACAGAAGTCTTTCTGGTTGTCCAATTGCTGCAGCTGAAAAGTTGG
CAATGACCCAGGACAAAAGTCAACTTGATTCTTCCCAGACTGGGCAGGGTCCTGAGCAGGCTCA
CAGGGTGAATTTAGTGAAGCAAATTGAATTTAACTTCCGCTCACAAGCCATCACCTCTCCAAGA
GCCTCTGCATCAAAAGAACAAGAGAAGTTTGGCAAAGTACCATTTGATTATGCCAGTTTTGATG
CACAAGTATTTGGTAAACGTCCGCTCCTACAAACAGGACAAGGACAAAAGGCACCACCATTTCC
TGAATCAAAGCATTTTTCAAATCCAGTGAAATTTTCTAATGGGCTGCCTAGTGCTGGCGCCCAC
ACACAGAGCACAGTCCGTGCCAGCTCTTATGGCCATGGTCAGTACAGTGAAGACACCCACATAG
CAGCAGCTGCTGCTATCCTGAACCTTTCCACCCGCTGCAGGGAAGCCACAGACATCCTCTCCAA
CAAACCGCAAAGCCTGCGTGCCAAGGGAGCTGAGATAGAAGTGGATGAAAACGGCACGTTGGAC
TTAAGCATGAAAAAACATCGAATCCTCGACAAGTCTATACCCCCGACTTCCTCACACACTACAA
TTGCAACCCCATCCTCATCCCCATTCAAAGCAAGCAGCCTTCTGGTCAATGCTGCCTTCTATCA
GGCTCTCTGTGACCAAGAAGGCTGGAATGTGCCTATCAACTATAGCAAATCCCACGGGAAGACA
GAGGAGGAGAAAGAGAAAGACCCTGTGAACTCCCTAGAAAATTTAGAGGAAAAAAAGTTTGCTG
GAGAGGCCTCTATTCCAAGTCCAAAGCCCAAGCTCCACACACGAGATCTCAAGAAAGAATTAAT
CACCTGCCCCACGCCAGGGTGTGATGGAAGCGGCCATGTCACAGGCAACTATGCATCTCACCGC
AGTGTCTCTGGATGTCCTCTAGCAGATAAGACTCTGAAGTCCCTCATGGCTGCCAACTCTCAAG
AGCTTAAGTGTCCAACCCCGGGTTGTGATGGTTCTGGTCACGTGACTGGAAACTATGCCTCCCA
TAGAAGCTTGTCTGGTTGCCCTCGTGCAAGGAAAGGTGGCATCAAAATGACCCCAACAAAGGAA
GAAAAAGAAGACTCTGAGCTTAGATGTCCTGTAATAGGATGTGACGGCCAAGGTCACATATCAG
GTAAATACACATCACACCGCACAGCTTCTGGCTGTCCTCTGGCTGCCAAGAGACAGAAGGAGAA
TCCCCTCAATGGGACCCCTCTCTCATGGAAACTGAACAAGCAAGAACTTCCCCACTGTCCTTTG
CCAGGATGCAATGGTCTGGGTCATGTAAACAACGTTTTTGTCACCCACAGGAGCTTATCCGGAT
GCCCTCTTAATGCACAAGCTATCAAAAAAGTCAAGGTCTCTGAGGAACTAATGACCATCAAGCT
CAAAGCAACTGGGGGTATTGAGGGTGATGAAGAAATTAGGCATCTGGATGAAGAAATAAAGGAA
CTGAATGAATCCAACCTTAAAATTGAAGCAGATATGATGAAACTTCAGACCCAGATAACATCTA
TGGAGAGCAACTTGAAGACCATAGAGGAGGAGAACAAGCTTATAGAGCAGAGCAACGAGAGTCT
ACTGAAGGAGCTGGCAGGGCTTAGCCAGGCTCTCATCTCCAGTCTTGCTGACATCCAGCTTCCA
CAGATGGGTCCTATCAATGAGCAGAATTTTGAAGCATATGTAAATACTCTCACAGACATGTACA
GCAATCTGGAACGGGACTATTCCCCAGAATGCAAAGCTCTACTGGAAAGCATCAAGCAGGCAGT
GAAAGGTATCCATGTGTAGGACAACAGTATGCAGGAAACGGAGGTCACTACAGCCATGAACTCC
CACAGATCCGCAGGAGACCAATACCCCTGGAGCCTGGAGGCTGTCCCCTGCGTTTATAATTGCA
ACATTGCACTAATTTTTCCCCAGTTGACATAAAAAAGAAAGAAAAACTATGATAAACTCTTTGG
ATTAAAAGCAATGCAGTCAATTATTAGATCTCATTTATTTTCATATCTTTTTCTTTTCTTTCTT
CATTGCACTCTTTATTTTGTAAAATATATGTAAAAATAAATGTGACATTTTATATTTTATTTAT
TACTAATCAAAGAGTTTTTTTATCTTTTATCTGCATTTTGAAGTCTACCATATTTTTACAGGTG
TGTTTATTAATTTATCTTCTAATAGGATTTAAATAGAAATGCTGTTCTCAAATCAAATATCTTT
CTGGGTTTAAACGAGAAAAACAAAACAAAAAATGTGTAAGGGAAATCCCAGTGTCAGGACTACA
CTATGGTCAAGCTTGGTTTCTACTGTGCACTTCCATTTCCCCTTTACTGGTTTTGTTTTTATAA
GTGATTTTTGGTAATGTGAGCTGTGAAGGATTATGAAGATAAATGGCGCCCACTAGTGGGAAAT
CAGCATTCAAAAGCACAGGATGTTAGCTAACAGTGCACTCAGAACTTGATAGCAATAATTAAAT
AAAGTAGTCAGCATAGTATTCCACATGGCTGCACCGATTTAATTAATCTGAATTATTTATTTGG
ACTGTTTAAAGCATACATTTATACATTTTAAGTGAGTCCAATTTGTCTTTTTGTTTTTCAAGTA
ACATTGGCTAGTTGGCAACCCTTTCCCAAGATGAGAAATAAGCTTTGATGTGACCAGCCAGGCC
TTTCCTGCTACACATTAGTACAATATACAAGTGACAATATTGGTGTAGATTTGTACTTACAAAT
ACAGACACATCCAAATGGAAATTTTGTAGATACCATATCCCCTGAAATAGCATTTATCTTACTG
GGTTAACTGGAAAAAAAATGGAAAACAGAAGGCCTGAAAAAAATGTTATTCCAACCTGAGTGGT
TACCTTGAACATTGGCAGCATTGATCTTTGTTTCCCTAGGAAATAAGACAGTTTTCAATTTAAT
CAAACTCTTGAACTACAAGTGACACAACATATGCTGCACATACACACACACACACACACACACA
CACACACACACACACACACACACACACACACACCAGCACAGTCCACACACGTATATGCACACTT
ATCCACACATGAAATTCAACCTACAATCTCAATGGGGTCAGAGTTCAGAAGGTGCTGTAGTAAA
GGCAATGTCTATTTCAGGGATTGTAAAGTAGTTAAGCATTGTTTCAAAAGTTTTTTTATATTTA
TTTTTTTTAAGGAAAAGGTATAGACAACCAGCTAAACTGCCTTTTTGGTGTGCACACACATTTC
ATGTGCAGATGTGCCTCTATGTAAAAGTACACATGAACTTTAGTGTGGGCTTAATTTTCTGTGC
TATAATAAAAGTGTTTATTTTTGATTAGCCTCATGAATATTTAGATCTAGTGTGATGGCATTCA
CAGGCTTGAATTCACTGTTACTACTGTTACTTGCTCAGACCCATGAAAAGTGGCACAGTCACCC
CACTCTCATGGACATGTGGATATTGTTATGCATCAAGTGGCGCTTATCTTTGGCTTGGGGTTCA
TTTGAACTCTCGAATCTTAGTTTAGTGAAAATGAGATGTCTGTTCTTAGGTAGGAAAGGTGTTT
ATTTAAAGCTCAATTTTAAAATAAGCAGCTACCAGGAGTAGTGTCTACTATAAGTGGGACACAA
AGTTTCCTATTAAAGTATGTCTTTGAACATTTTGCTACACAATACTTCAAAGAAGCACACAAAT
GGGCTCACTTATTACAAAGACAGAAGTTTACTTTGCTAAATATTTTAACAAGTTTGTTATATAT
TTTATTTAAAGAGATCTCTTACAATTCTACATATTTATTACTATAATTTACATAGCTTCAGTTA
ATTTATTTGTGTTCACATAGTTTTATGAAGTGTGTCCATATTTATTTGCCTCCTTGGTACTTGT
GTTTTGTAACATGTACTGAATTATTTTCTTTTCAACTAATGTTAATGATTGATACTGTAAATTG
GGTCTTTTGTAAACAGAAACAAAGGCAGCGATGTATGCATTTTTATTTGAAGTAGTTTGTTTGT
ATACTGTTTCTCCAAATGATTAATATTTCTTACATCAATGCAACAAAATTGTGTTCAGTGCTGT
ACATTCGGTGTATGGTAGGAAATAAAAATTGATAATGAA

hide sequence

RefSeq Acc Id:

XM_017593173 ⟹ XP_017448662

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	17,369,383 - 17,701,094 (-)	NCBI
mRatBN7.2	5	12,582,493 - 12,914,221 (-)	NCBI
Rnor_6.0	5	12,437,617 - 12,787,223 (-)	NCBI

Sequence:

show sequence

GAAATGAGTTCTGAATAGACAGCATTTTCTTTGTGTGATTGGTAAATAACACAGAGCAAAGTTA
GCAAGTTGCAGGCTTCTGCATTCTGACTCTATGCAACCTTTTTGTGGAGAGAAGGGCAGGATGT
TTCTCACAGAATGTAACCTCACAGGACTACTAGAGACAGTAATGAGATATCTGAATGGATCAAC
ATGGAGAAACCCTAGGAGAAATAGCATAAGAACACTTGGAACATATGAAAGAAAAGATAATTTT
CCACATACCTGTAGACATCTACCAGGTACAGCCATGACATCTCTTCTGTTCAAATTCAGTAGCT
GCTAGAAAAGATGGATGCAGAGGTTGAAGATAAAGCGTTGCATACTCTCTCAAAAGGAACCGAA
GTTCCAATGGATTCTCTGATCCCAGAGCTCAGGGTTGCATATGATTGCTCTATGGCGAAGAAGA
GGAGAGCTGAAGAGCAGGCATTGGGAGTGCCAGTTAACAAGAGGAAATCTCTGTTAATGAAACC
CCGGCACTACAGCCCAGACATGGACTGCAAGGAAAACCCAGACAACAGGAATGAGGATGATGGC
CTAGAAACGAATGACCACTCCACTGCAGATGAAATCGTGGTAAAACCCATGGATAAGACTCTTC
ATTTACCTGCACAAGAAAGCTCACTCCCCAAGGAAGACCAATACGCGTGTTATCCAGAGCTCAT
GGTCAAATCTCTGATGCATTTAGGTAAATTTGAAGAAAGTGAGTCTGTGCAGACCGTAGGTGAG
AACTTAAATGGCAACGGCATCCAGTCTCTAAAAGCAGAGTGTGATGAAGCAAATGAATGCTTTA
TGGTTCATTCTGATGATGGAAGAGACAAAGTCCACCATTCCCAGCCACCTTTCTGCTCTTCCGG
TGACAGTGAGAGTGACTCTGACAGTACAGAGAATGGGTGGGGCAGTGGCTCCAACTCTTCAGAA
GACACTGACACTCACAAAGGCCCCAAACGCAAGCTGACATACAATAGAAAGGACCTGCTGGAAG
TCCCTGAGATAAAAGCAGAAGATGACAAGTTTATCCCTTGCGAGAACAGGTGTGATTCTGACAC
CAGTGGGAGAGACCCACAGAACTCTCACATGGAACCCTTGGCTGTGAAAGTCCAGCCTTCCTTC
CCAGAGGTTGAAGAGAGTGAGAGCCTGGCCACAGTAATAGCGGAGTCTGCTGAGGTGGAGAAAG
CGAAGGGGAGCCTGAGTTTGCTGGAACAGGCTATTGCCCTACAGGCTGAACGGGGTTCCGTCTT
CCATCACACCTACAAAGAGCTGGACCGATTTCTCCTGGACCACCTGGCAAGGCAACGGAGGCAA
CCCAAGGTTACTGATGCCAGTGGAAGGCAAATCTTTAATAATAAACATTCACCAAGGCCTGAAA
GGAGGGAGGCTAAGTGCCCCATTCCTGGCTGTGACGGCACAGGGCACGTAACGGGGCTCTACCC
CCACCACCGCAGCCTTTCTGGGTGCCCCCACAAAGTGCGAGTTCCTCTGGAAATTCTTGCCATG
CATGAGAACGTACTCAAGTGTCCCACCCCAGGATGCACAGGAAGGGGACATGTGAACAGCAATC
GCAACACTCACAGAAGTCTTTCTGGTTGTCCAATTGCTGCAGCTGAAAAGTTGGCAATGACCCA
GGACAAAAGTCAACTTGATTCTTCCCAGACTGGGCAGGGTCCTGAGCAGGCTCACAGGGTGAAT
TTAGTGAAGCAAATTGAATTTAACTTCCGCTCACAAGCCATCACCTCTCCAAGAGCCTCTGCAT
CAAAAGAACAAGAGAAGTTTGGCAAAGTACCATTTGATTATGCCAGTTTTGATGCACAAGTATT
TGGTAAACGTCCGCTCCTACAAACAGGACAAGGACAAAAGGCACCACCATTTCCTGAATCAAAG
CATTTTTCAAATCCAGTGAAATTTTCTAATGGGCTGCCTAGTGCTGGCGCCCACACACAGAGCA
CAGTCCGTGCCAGCTCTTATGGCCATGGTCAGTACAGTGAAGACACCCACATAGCAGCAGCTGC
TGCTATCCTGAACCTTTCCACCCGCTGCAGGGAAGCCACAGACATCCTCTCCAACAAACCGCAA
AGCCTGCGTGCCAAGGGAGCTGAGATAGAAGTGGATGAAAACGGCACGTTGGACTTAAGCATGA
AAAAACATCGAATCCTCGACAAGTCTATACCCCCGACTTCCTCACACACTACAATTGCAACCCC
ATCCTCATCCCCATTCAAAGCAAGCAGCCTTCTGGTCAATGCTGCCTTCTATCAGGCTCTCTGT
GACCAAGAAGGCTGGAATGTGCCTATCAACTATAGCAAATCCCACGGGAAGACAGAGGAGGAGA
AAGAGAAAGACCCTGTGAACTCCCTAGAAAATTTAGAGGAAAAAAAGTTTGCTGGAGAGGCCTC
TATTCCAAGTCCAAAGCCCAAGCTCCACACACGAGATCTCAAGAAAGAATTAATCACCTGCCCC
ACGCCAGGGTGTGATGGAAGCGGCCATGTCACAGGCAACTATGCATCTCACCGCAGTGTCTCTG
GATGTCCTCTAGCAGATAAGACTCTGAAGTCCCTCATGGCTGCCAACTCTCAAGAGCTTAAGTG
TCCAACCCCGGGTTGTGATGGTTCTGGTCACGTGACTGGAAACTATGCCTCCCATAGAAGCTTG
TCTGGTTGCCCTCGTGCAAGGAAAGGTGGCATCAAAATGACCCCAACAAAGGAAGAAAAAGAAG
ACTCTGAGCTTAGATGTCCTGTAATAGGATGTGACGGCCAAGGTCACATATCAGGTAAATACAC
ATCACACCGCACAGCTTCTGGCTGTCCTCTGGCTGCCAAGAGACAGAAGGAGAATCCCCTCAAT
GGGACCCCTCTCTCATGGAAACTGAACAAGCAAGAACTTCCCCACTGTCCTTTGCCAGGATGCA
ATGGTCTGGGTCATGTAAACAACGTTTTTGTCACCCACAGGAGCTTATCCGGATGCCCTCTTAA
TGCACAAGCTATCAAAAAAGTCAAGGTCTCTGAGGAACTAATGACCATCAAGCTCAAAGCAACT
GGGGGTATTGAGGGTGATGAAGAAATTAGGCATCTGGATGAAGAAATAAAGGAACTGAATGAAT
CCAACCTTAAAATTGAAGCAGATATGATGAAACTTCAGACCCAGATAACATCTATGGAGAGCAA
CTTGAAGACCATAGAGGAGGAGAACAAGCTTATAGAGCAGAGCAACGAGAGTCTACTGAAGGAG
CTGGCAGGGCTTAGCCAGGCTCTCATCTCCAGTCTTGCTGACATCCAGCTTCCACAGATGGGTC
CTATCAATGAGCAGAATTTTGAAGCATATGTAAATACTCTCACAGACATGTACAGCAATCTGGA
ACGGGACTATTCCCCAGAATGCAAAGCTCTACTGGAAAGCATCAAGCAGGCAGTGAAAGGTATC
CATGTGTAGGACAACAGTATGCAGGAAACGGAGGTCACTACAGCCATGAACTCCCACAGATCCG
CAGGAGACCAATACCCCTGGAGCCTGGAGGCTGTCCCCTGCGTTTATAATTGCAACATTGCACT
AATTTTTCCCCAGTTGACATAAAAAAGAAAGAAAAACTATGATAAACTCTTTGGATTAAAAGCA
ATGCAGTCAATTATTAGATCTCATTTATTTTCATATCTTTTTCTTTTCTTTCTTCATTGCACTC
TTTATTTTGTAAAATATATGTAAAAATAAATGTGACATTTTATATTTTATTTATTACTAATCAA
AGAGTTTTTTTATCTTTTATCTGCATTTTGAAGTCTACCATATTTTTACAGGTGTGTTTATTAA
TTTATCTTCTAATAGGATTTAAATAGAAATGCTGTTCTCAAATCAAATATCTTTCTGGGTTTAA
ACGAGAAAAACAAAACAAAAAATGTGTAAGGGAAATCCCAGTGTCAGGACTACACTATGGTCAA
GCTTGGTTTCTACTGTGCACTTCCATTTCCCCTTTACTGGTTTTGTTTTTATAAGTGATTTTTG
GTAATGTGAGCTGTGAAGGATTATGAAGATAAATGGCGCCCACTAGTGGGAAATCAGCATTCAA
AAGCACAGGATGTTAGCTAACAGTGCACTCAGAACTTGATAGCAATAATTAAATAAAGTAGTCA
GCATAGTATTCCACATGGCTGCACCGATTTAATTAATCTGAATTATTTATTTGGACTGTTTAAA
GCATACATTTATACATTTTAAGTGAGTCCAATTTGTCTTTTTGTTTTTCAAGTAACATTGGCTA
GTTGGCAACCCTTTCCCAAGATGAGAAATAAGCTTTGATGTGACCAGCCAGGCCTTTCCTGCTA
CACATTAGTACAATATACAAGTGACAATATTGGTGTAGATTTGTACTTACAAATACAGACACAT
CCAAATGGAAATTTTGTAGATACCATATCCCCTGAAATAGCATTTATCTTACTGGGTTAACTGG
AAAAAAAATGGAAAACAGAAGGCCTGAAAAAAATGTTATTCCAACCTGAGTGGTTACCTTGAAC
ATTGGCAGCATTGATCTTTGTTTCCCTAGGAAATAAGACAGTTTTCAATTTAATCAAACTCTTG
AACTACAAGTGACACAACATATGCTGCACATACACACACACACACACACACACACACACACACA
CACACACACACACACACACACACCAGCACAGTCCACACACGTATATGCACACTTATCCACACAT
GAAATTCAACCTACAATCTCAATGGGGTCAGAGTTCAGAAGGTGCTGTAGTAAAGGCAATGTCT
ATTTCAGGGATTGTAAAGTAGTTAAGCATTGTTTCAAAAGTTTTTTTATATTTATTTTTTTTAA
GGAAAAGGTATAGACAACCAGCTAAACTGCCTTTTTGGTGTGCACACACATTTCATGTGCAGAT
GTGCCTCTATGTAAAAGTACACATGAACTTTAGTGTGGGCTTAATTTTCTGTGCTATAATAAAA
GTGTTTATTTTTGATTAGCCTCATGAATATTTAGATCTAGTGTGATGGCATTCACAGGCTTGAA
TTCACTGTTACTACTGTTACTTGCTCAGACCCATGAAAAGTGGCACAGTCACCCCACTCTCATG
GACATGTGGATATTGTTATGCATCAAGTGGCGCTTATCTTTGGCTTGGGGTTCATTTGAACTCT
CGAATCTTAGTTTAGTGAAAATGAGATGTCTGTTCTTAGGTAGGAAAGGTGTTTATTTAAAGCT
CAATTTTAAAATAAGCAGCTACCAGGAGTAGTGTCTACTATAAGTGGGACACAAAGTTTCCTAT
TAAAGTATGTCTTTGAACATTTTGCTACACAATACTTCAAAGAAGCACACAAATGGGCTCACTT
ATTACAAAGACAGAAGTTTACTTTGCTAAATATTTTAACAAGTTTGTTATATATTTTATTTAAA
GAGATCTCTTACAATTCTACATATTTATTACTATAATTTACATAGCTTCAGTTAATTTATTTGT
GTTCACATAGTTTTATGAAGTGTGTCCATATTTATTTGCCTCCTTGGTACTTGTGTTTTGTAAC
ATGTACTGAATTATTTTCTTTTCAACTAATGTTAATGATTGATACTGTAAATTGGGTCTTTTGT
AAACAGAAACAAAGGCAGCGATGTATGCATTTTTATTTGAAGTAGTTTGTTTGTATACTGTTTC
TCCAAATGATTAATATTTCTTACATCAATGCAACAAAATTGTGTTCAGTGCTGTACATTCGGTG
TATGGTAGGAAATAAAAATTGATAATGAA

hide sequence

RefSeq Acc Id:

XM_039109332 ⟹ XP_038965260

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	17,369,383 - 17,603,959 (-)	NCBI
mRatBN7.2	5	12,582,493 - 12,817,077 (-)	NCBI

RefSeq Acc Id:

XM_063287205 ⟹ XP_063143275

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	17,369,383 - 17,494,893 (-)	NCBI

RefSeq Acc Id:

XM_063287206 ⟹ XP_063143276

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	17,369,383 - 17,487,245 (-)	NCBI

RefSeq Acc Id:

XM_063287207 ⟹ XP_063143277

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	17,369,383 - 17,501,163 (-)	NCBI

RefSeq Acc Id:

XM_063287208 ⟹ XP_063143278

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	17,369,383 - 17,495,093 (-)	NCBI

RefSeq Acc Id:

XM_063287209 ⟹ XP_063143279

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	17,369,383 - 17,494,893 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_695222	(Get FASTA)	NCBI Sequence Viewer
	XP_008761712	(Get FASTA)	NCBI Sequence Viewer
	XP_017448662	(Get FASTA)	NCBI Sequence Viewer
	XP_038965260	(Get FASTA)	NCBI Sequence Viewer
	XP_063143275	(Get FASTA)	NCBI Sequence Viewer
	XP_063143276	(Get FASTA)	NCBI Sequence Viewer
	XP_063143277	(Get FASTA)	NCBI Sequence Viewer
	XP_063143278	(Get FASTA)	NCBI Sequence Viewer
	XP_063143279	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAB40717	(Get FASTA)	NCBI Sequence Viewer
	AAC40048	(Get FASTA)	NCBI Sequence Viewer
	EDM11573	(Get FASTA)	NCBI Sequence Viewer
	EDM11574	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000056380
GenBank Protein	Q9QX27	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_695222 ⟸ NM_153310

- UniProtKB:

A0A0G2KAF8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDAEVEDKALHTLSKGTEVPMDSLIPELRVAYDCSMAKKRRAEEQALGVPVNKRKSLLMKPRHY
SPDMDCKENPDNRNEDDGLETNDHSTADEIVVKPMDKTLHLPAQESSLPKEDQYACYPELMVKS
LMHLGKFEESESVQTVGENLNGNGIQSLKAECDEANECFMVHSDDGRDKVHHSQPPFCSSGDSE
SDSDNTENGWGSGSNSSEDTDTHKGPKRKLTYNRKDLLEVPEIKAEDDKFIPCENRCDSDTSGR
DPQNSHMEPLAVKVQPSFPEVEESESLATVIAESAEVEKAKGSLSLLEQAIALQAERGSVFHHT
YKELDRFLLDHLARQRRQPKVTDASGRQIFNNKHSPRPERREAKCPIPGCDGTGHVTGLYPHHR
SLSGCPHKVRVPLEILAMHENVLKCPTPGCTGRGHVNSNRNTHRSLSGCPIAAAEKLAMTQDKS
QLDSSQTGQGPEQAHRVNLVKQIEFNFRSQAITSPRASASKEQEKFGKVPFDYASFDAQVFGKR
PLLQTGQGQKAPPFPESKHFSNPVKFSNGLPSAGAHTQSTVRASSYGHGQYSEDTHIAAAAAIL
NLSTRCREATDILSNKPQSLRAKGAEIEVDENGTLDLSMKKHRILDKSIPPTSSHTTIATPSSS
PFKASSLLVNAAFYQALCDQEGWNVPINYSKSHGKTEEEKEKDPVNSLENLEEKKFAGEASIPS
PKPKLHTRDLKKELITCPTPGCDGSGHVTGNYASHRSVSGCPLADKTLKSLMAANSQELKCPTP
GCDGSGHVTGNYASHRSLSGCPRARKGGIKMTPTKEEKEDSELRCPVIGCDGQGHISGKYTSHR
TASGCPLAAKRQKENPLNGTPLSWKLNKQELPHCPLPGCNGLGHVNNVFVTHRSLSGCPLNAQA
IKKVKVSEELMTIKLKATGGIEGDEEIRHLDEEIKELNESNLKIEADMMKLQTQITSMESNLKT
IEEENKLIEQSNESLLKELAGLSQALISSLADIQLPQMGPINEQNFEAYVNTLTDMYSNLERDY
SPECKALLESIKQAVKGIHV

hide sequence

RefSeq Acc Id:	XP_008761712 ⟸ XM_008763490
- Peptide Label:	isoform X1
- UniProtKB:	D3ZTP6 (UniProtKB/TrEMBL), A6JFH7 (UniProtKB/TrEMBL), A0A0G2KAF8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDAEVEDKALHTLSKGTEVPMDSLIPELRVAYDCSMAKKRRAEEQALGVPVNKRKSLLMKPRHY SPDMDCKENPDNRNEDDGLETNDHSTADEIVVKPMDKTLHLPAQESSLPKEDQYACYPELMVKS LMHLGKFEESESVQTVGENLNGNGIQSLKAECDEANECFMVHSDDGRDKVHHSQPPFCSSGDSE SDSDSTENGWGSGSNSSEDTDTHKGPKRKLTYNRKDLLEVPEIKAEDDKFIPCENRCDSDTSGR DPQNSHMEPLAVKVQPSFPEVEESESLATVIAESAEVEKAKGSLSLLEQAIALQAERGSVFHHT YKELDRFLLDHLARQRRQPKVTDASGRQIFNNKHSPRPERREAKCPIPGCDGTGHVTGLYPHHR SLSGCPHKVRVPLEILAMHENVLKCPTPGCTGRGHVNSNRNTHRSLSGCPIAAAEKLAMTQDKS QLDSSQTGQGPEQAHRVNLVKQIEFNFRSQAITSPRASASKEQEKFGKVPFDYASFDAQVFGKR PLLQTGQGQKAPPFPESKHFSNPVKFSNGLPSAGAHTQSTVRASSYGHGQYSEDTHIAAAAAIL NLSTRCREATDILSNKPQSLRAKGAEIEVDENGTLDLSMKKHRILDKSIPPTSSHTTIATPSSS PFKASSLLVNAAFYQALCDQEGWNVPINYSKSHGKTEEEKEKDPVNSLENLEEKKFAGEASIPS PKPKLHTRDLKKELITCPTPGCDGSGHVTGNYASHRSVSGCPLADKTLKSLMAANSQELKCPTP GCDGSGHVTGNYASHRSLSGCPRARKGGIKMTPTKEEKEDSELRCPVIGCDGQGHISGKYTSHR TASGCPLAAKRQKENPLNGTPLSWKLNKQELPHCPLPGCNGLGHVNNVFVTHRSLSGCPLNAQA IKKVKVSEELMTIKLKATGGIEGDEEIRHLDEEIKELNESNLKIEADMMKLQTQITSMESNLKT IEEENKLIEQSNESLLKELAGLSQALISSLADIQLPQMGPINEQNFEAYVNTLTDMYSNLERDY SPECKALLESIKQAVKGIHV hide sequence

RefSeq Acc Id:	XP_017448662 ⟸ XM_017593173
- Peptide Label:	isoform X1
- UniProtKB:	D3ZTP6 (UniProtKB/TrEMBL), A6JFH7 (UniProtKB/TrEMBL), A0A0G2KAF8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDAEVEDKALHTLSKGTEVPMDSLIPELRVAYDCSMAKKRRAEEQALGVPVNKRKSLLMKPRHY SPDMDCKENPDNRNEDDGLETNDHSTADEIVVKPMDKTLHLPAQESSLPKEDQYACYPELMVKS LMHLGKFEESESVQTVGENLNGNGIQSLKAECDEANECFMVHSDDGRDKVHHSQPPFCSSGDSE SDSDSTENGWGSGSNSSEDTDTHKGPKRKLTYNRKDLLEVPEIKAEDDKFIPCENRCDSDTSGR DPQNSHMEPLAVKVQPSFPEVEESESLATVIAESAEVEKAKGSLSLLEQAIALQAERGSVFHHT YKELDRFLLDHLARQRRQPKVTDASGRQIFNNKHSPRPERREAKCPIPGCDGTGHVTGLYPHHR SLSGCPHKVRVPLEILAMHENVLKCPTPGCTGRGHVNSNRNTHRSLSGCPIAAAEKLAMTQDKS QLDSSQTGQGPEQAHRVNLVKQIEFNFRSQAITSPRASASKEQEKFGKVPFDYASFDAQVFGKR PLLQTGQGQKAPPFPESKHFSNPVKFSNGLPSAGAHTQSTVRASSYGHGQYSEDTHIAAAAAIL NLSTRCREATDILSNKPQSLRAKGAEIEVDENGTLDLSMKKHRILDKSIPPTSSHTTIATPSSS PFKASSLLVNAAFYQALCDQEGWNVPINYSKSHGKTEEEKEKDPVNSLENLEEKKFAGEASIPS PKPKLHTRDLKKELITCPTPGCDGSGHVTGNYASHRSVSGCPLADKTLKSLMAANSQELKCPTP GCDGSGHVTGNYASHRSLSGCPRARKGGIKMTPTKEEKEDSELRCPVIGCDGQGHISGKYTSHR TASGCPLAAKRQKENPLNGTPLSWKLNKQELPHCPLPGCNGLGHVNNVFVTHRSLSGCPLNAQA IKKVKVSEELMTIKLKATGGIEGDEEIRHLDEEIKELNESNLKIEADMMKLQTQITSMESNLKT IEEENKLIEQSNESLLKELAGLSQALISSLADIQLPQMGPINEQNFEAYVNTLTDMYSNLERDY SPECKALLESIKQAVKGIHV hide sequence

Ensembl Acc Id:

ENSRNOP00000075382 ⟸ ENSRNOT00000092104

Ensembl Acc Id:

ENSRNOP00000056380 ⟸ ENSRNOT00000059625

Ensembl Acc Id:

ENSRNOP00000072462 ⟸ ENSRNOT00000091649

RefSeq Acc Id:	XP_038965260 ⟸ XM_039109332
- Peptide Label:	isoform X1
- UniProtKB:	D3ZTP6 (UniProtKB/TrEMBL), A6JFH7 (UniProtKB/TrEMBL), A0A0G2KAF8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143277 ⟸ XM_063287207
- Peptide Label:	isoform X2
- UniProtKB:	A6JFH8 (UniProtKB/TrEMBL), A0A0G2KAF8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143278 ⟸ XM_063287208
- Peptide Label:	isoform X2
- UniProtKB:	A6JFH8 (UniProtKB/TrEMBL), A0A0G2KAF8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143279 ⟸ XM_063287209
- Peptide Label:	isoform X2
- UniProtKB:	A6JFH8 (UniProtKB/TrEMBL), A0A0G2KAF8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143275 ⟸ XM_063287205
- Peptide Label:	isoform X1
- UniProtKB:	A6JFH7 (UniProtKB/TrEMBL), D3ZTP6 (UniProtKB/TrEMBL), A0A0G2KAF8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143276 ⟸ XM_063287206
- Peptide Label:	isoform X1
- UniProtKB:	A6JFH7 (UniProtKB/TrEMBL), D3ZTP6 (UniProtKB/TrEMBL), A0A0G2KAF8 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000109462 ⟸ ENSRNOT00000159649

Ensembl Acc Id:

ENSRNOP00000104593 ⟸ ENSRNOT00000137537

Protein Domains

Myelin transcription factor

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9QX27-F1-model_v2	AlphaFold	Q9QX27	1-1032	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:708566	AgrOrtholog
BioCyc Gene	G2FUF-42176	BioCyc
Ensembl Genes	ENSRNOG00000006200	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000059625	ENTREZGENE
Gene3D-CATH	4.10.320.30	UniProtKB/Swiss-Prot
InterPro	Myelin_TF	UniProtKB/Swiss-Prot
	Znf_C2H2C	UniProtKB/Swiss-Prot
	Znf_C2H2C_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:266680	UniProtKB/Swiss-Prot
NCBI Gene	266680	ENTREZGENE
PANTHER	MYELIN TRANSCRIPTION FACTOR 1-RELATED	UniProtKB/Swiss-Prot
	SUPPRESSION OF TUMORIGENICITY 18 PROTEIN	UniProtKB/Swiss-Prot
Pfam	MYT1	UniProtKB/Swiss-Prot
	zf-C2HC	UniProtKB/Swiss-Prot
PharmGKB	ST18	RGD
PhenoGen	St18	PhenoGen
PROSITE	ZF_CCHHC	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000006200	RatGTEx
Superfamily-SCOP	SSF103637	UniProtKB/Swiss-Prot
UniProt	A0A0G2KAF8	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0L4N6_RAT	UniProtKB/TrEMBL
	A0ABK0LYD0_RAT	UniProtKB/TrEMBL
	A6JFH7	ENTREZGENE, UniProtKB/TrEMBL
	A6JFH8	ENTREZGENE, UniProtKB/TrEMBL
	D3ZTP6	ENTREZGENE, UniProtKB/TrEMBL
	Q9QX27	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	P70588	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-04-02	St18	ST18 C2H2C-type zinc finger transcription factor	St18	ST18, C2H2C-type zinc finger	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2017-03-21	St18	ST18, C2H2C-type zinc finger	St18	suppression of tumorigenicity 18	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-12-14	St18	suppression of tumorigenicity 18	Nzf3	neural zinc finger factor 3	Symbol and Name updated	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message