Advanced Search (OLGA)

Gene: Stx17 (syntaxin 17) Rattus norvegicus

Analyze

Symbol:

Stx17

Name:

syntaxin 17

RGD ID:

708499

Description:

Enables SNARE binding activity and protein kinase binding activity. Predicted to be involved in several processes, including endoplasmic reticulum to Golgi vesicle-mediated transport; endoplasmic reticulum-Golgi intermediate compartment organization; and macroautophagy. Predicted to act upstream of or within protein localization to phagophore assembly site. Located in several cellular components, including COPII-coated ER to Golgi transport vesicle; endoplasmic reticulum-Golgi intermediate compartment; and smooth endoplasmic reticulum membrane. Orthologous to human STX17 (syntaxin 17); INTERACTS WITH 1,3-dinitrobenzene; 2,6-dinitrotoluene; acetamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC252853; syntaxin-17

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	STX17 (syntaxin 17)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Stx17 (syntaxin 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Stx17 (syntaxin 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	STX17 (syntaxin 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	STX17 (syntaxin 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Stx17 (syntaxin 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	STX17 (syntaxin 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	STX17 (syntaxin 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Stx17 (syntaxin 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Stx17 (syntaxin 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Stx17 (syntaxin 17)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	STX17 (syntaxin 17)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	stx17 (syntaxin 17)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Syx17	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Syx17	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	syx-17	Alliance	DIOPT (Ensembl Compara\|OrthoFinder)
Caenorhabditis elegans (roundworm):	syx-17	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	67,241,673 - 67,302,228 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	67,241,727 - 67,302,218 (+)	Ensembl				GRCr8
mRatBN7.2	5	62,446,138 - 62,506,108 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	62,446,187 - 62,504,451 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	64,420,535 - 64,476,984 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	66,239,828 - 66,296,277 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	66,209,293 - 66,265,742 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	63,866,346 - 63,926,276 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	63,870,432 - 63,922,730 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	68,383,379 - 68,443,631 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	64,798,013 - 64,854,400 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	65,092,596 - 65,149,083 (-)	NCBI		Celera
RGSC_v3.1	5	64,803,051 - 64,859,439 (+)	NCBI
Cytogenetic Map	5	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

alopecia areata (ISO)

melanoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

1,3-dinitrobenzene (EXP)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,6-dinitrotoluene (EXP)

4-hydroxyphenyl retinamide (ISO)

acetamide (EXP)

aflatoxin B1 (ISO)

ammonium chloride (EXP)

amphetamine (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

enzyme inhibitor (ISO)

folic acid (ISO)

FR900359 (ISO)

lanthanum trichloride (EXP)

methamphetamine (EXP,ISO)

methylmercury chloride (ISO)

okadaic acid (ISO)

perfluorohexanesulfonic acid (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

resveratrol (ISO)

SB 431542 (ISO)

selenomethionine (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tamoxifen (ISO)

tetrachloromethane (EXP)

tetraphene (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

vitamin E (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

autophagosome maturation (IEA,ISO,ISS)

autophagosome membrane docking (IEA,ISO)

autophagosome-lysosome fusion (IEA,ISO,ISS)

autophagy (IEA)

endoplasmic reticulum to Golgi vesicle-mediated transport (IEA,ISO,ISS)

endoplasmic reticulum-Golgi intermediate compartment organization (IEA,ISO,ISS)

exocytosis (IBA)

Golgi organization (IEA,ISO,ISS)

intracellular protein transport (IBA,IEA)

protein localization to phagophore assembly site (ISO)

vesicle docking (IBA)

vesicle fusion (IBA)

vesicle-mediated transport (IEA)

Cellular Component

autolysosome membrane (ISO,ISS)

autophagosome (IEA,ISO,ISS)

autophagosome membrane (IBA,IEA,ISO,ISS)

COPII-coated ER to Golgi transport vesicle (IDA)

cytoplasm (IEA)

cytoplasmic vesicle (IEA)

cytosol (IDA,IEA)

endomembrane system (IBA)

endoplasmic reticulum membrane (IEA,ISO,ISS)

endoplasmic reticulum-Golgi intermediate compartment (IDA,IEA,ISO)

endoplasmic reticulum-Golgi intermediate compartment membrane (IEA)

ER to Golgi transport vesicle membrane (IEA)

HOPS complex (IEA,ISO)

lysosomal membrane (ISO)

membrane (IEA)

mitochondria-associated endoplasmic reticulum membrane contact site (IEA,ISO)

mitochondrion (ISO,ISS)

plasma membrane (IBA)

rough endoplasmic reticulum (ISO)

smooth endoplasmic reticulum membrane (IDA,IEA)

SNARE complex (IBA,IEA,ISO,ISS)

Molecular Function

protein binding (IPI,ISO)

protein kinase binding (IPI)

protein phosphatase binding (IEA,ISO)

SNAP receptor activity (IBA,IEA,ISO,ISS)

SNARE binding (IBA,IEA,IPI,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Tyrosine phosphorylation of a SNARE protein, syntaxin 17: implications for membrane trafficking in the early secretory pathway.	Muppirala M, etal., Biochim Biophys Acta. 2012 Dec;1823(12):2109-19. doi: 10.1016/j.bbamcr.2012.09.003. Epub 2012 Sep 21.
3.	Syntaxin 17 cycles between the ER and ERGIC and is required to maintain the architecture of ERGIC and Golgi.	Muppirala M, etal., Biol Cell. 2011 Jul;103(7):333-50. doi: 10.1042/BC20110006.
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Three novel proteins of the syntaxin/SNAP-25 family.	Steegmaier M, etal., J Biol Chem 1998 Dec 18;273(51):34171-9.
7.	Syntaxin 17 is abundant in steroidogenic cells and implicated in smooth endoplasmic reticulum membrane dynamics.	Steegmaier M, etal., Mol Biol Cell. 2000 Aug;11(8):2719-31.

Additional References at PubMed

PMID:23217709	PMID:23455425	PMID:24554770	PMID:25686604	PMID:26416964	PMID:27628032	PMID:28306502	PMID:32467992

Genomics

Comparative Map Data

Stx17
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	67,241,673 - 67,302,228 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	67,241,727 - 67,302,218 (+)	Ensembl				GRCr8
mRatBN7.2	5	62,446,138 - 62,506,108 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	62,446,187 - 62,504,451 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	64,420,535 - 64,476,984 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	66,239,828 - 66,296,277 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	66,209,293 - 66,265,742 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	63,866,346 - 63,926,276 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	63,870,432 - 63,922,730 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	68,383,379 - 68,443,631 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	64,798,013 - 64,854,400 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	65,092,596 - 65,149,083 (-)	NCBI		Celera
RGSC_v3.1	5	64,803,051 - 64,859,439 (+)	NCBI
Cytogenetic Map	5	q22	NCBI

STX17
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	99,906,654 - 99,974,534 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	99,906,654 - 99,974,534 (+)	Ensembl			hg38	GRCh38
GRCh37	9	102,668,936 - 102,736,816 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	101,708,736 - 101,776,639 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	9	99,748,520 - 99,812,176	NCBI
Celera	9	73,182,319 - 73,250,212 (+)	NCBI		Celera
Cytogenetic Map	9	q31.1	NCBI
HuRef	9	72,267,951 - 72,335,844 (+)	NCBI		HuRef
CHM1_1	9	102,815,379 - 102,883,282 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	112,078,304 - 112,146,158 (+)	NCBI		T2T-CHM13v2.0

Stx17
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	48,124,912 - 48,186,507 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	48,124,915 - 48,186,507 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	48,124,906 - 48,186,507 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	48,124,915 - 48,186,507 (+)	Ensembl			mm10	GRCm38
MGSCv37	4	48,137,791 - 48,199,379 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	48,146,019 - 48,207,607 (+)	NCBI		MGSCv36	mm8
Celera	4	48,146,702 - 48,208,290 (+)	NCBI		Celera
Cytogenetic Map	4	B1	NCBI
cM Map	4	26.07	NCBI

Stx17
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	25,674,771 - 25,741,355 (-)	Ensembl
ChiLan1.0	NW_004955419	25,674,771 - 25,741,357 (-)	NCBI	ChiLan1.0	ChiLan1.0

STX17
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	39,489,585 - 39,557,503 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	39,491,422 - 39,559,874 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	70,989,913 - 71,058,374 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	99,107,182 - 99,174,648 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	99,107,243 - 99,168,801 (+)	Ensembl			panPan2	panpan1.1

STX17
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	56,885,874 - 56,951,714 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	56,885,174 - 56,945,767 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	55,317,343 - 55,389,186 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	57,994,856 - 58,066,658 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	57,994,870 - 58,059,433 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	56,499,047 - 56,570,883 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	56,523,978 - 56,595,735 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	57,223,368 - 57,295,171 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Stx17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	171,776,982 - 171,833,664 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936524	8,324,569 - 8,376,114 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936524	8,324,562 - 8,381,244 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

STX17
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	241,657,506 - 241,765,783 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	241,657,463 - 241,785,270 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	269,887,848 - 270,007,730 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

STX17
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	39,457,816 - 39,525,138 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	39,462,367 - 39,516,531 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666035	3,024,110 - 3,101,121 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Stx17
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624825	972,755 - 1,066,597 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624825	967,493 - 1,066,513 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Stx17
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	101,222,945 - 101,276,205 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Stx17
590 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	95
Count of miRNA genes:	78
Interacting mature miRNAs:	90
Transcripts:	ENSRNOT00000007641
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578776	Stresp18	Stress response QTL 18	2.9		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	5	32751649	77751649	Rat
1298067	Scl15	Serum cholesterol level QTL 15	4.8	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	38011670	83011670	Rat
1300115	Hrtrt7	Heart rate QTL 7	2.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	52665372	94894052	Rat
6907115	Mcs29	Mammary carcinoma susceptibility QTL 29			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	38004331	83004331	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	44924861	153890773	Rat
1358353	Srcrtb2	Stress Responsive Cort Basal QTL 2	3.48	0.003	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	23671493	79046465	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	38207390	136631402	Rat
61386	Bp49	Blood pressure QTL 49	16.6		cerebrum integrity trait (VT:0010549)	brain infarction volume (CMO:0001013)	5	65089051	103648916	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	48523123	134369373	Rat
1598807	Glom12	Glomerulus QTL 12	2.7		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	38011670	83011670	Rat
1302786	Kidm8	Kidney mass QTL 8	28.15		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	38011670	83011670	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	65089051	166764498	Rat
1331782	Rf36	Renal function QTL 36	3.296		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	39019942	102105896	Rat
6903292	Stl28	Serum triglyceride level QTL 28	2.6	0.0073	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	5	33311673	78311673	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
1578767	Stresp17	Stress response QTL 17	4.3	0.01	blood aldosterone amount (VT:0005346)	plasma aldosterone level (CMO:0000551)	5	32751649	77751649	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	39985948	84985948	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	6922282	81330203	Rat
6903306	Scl35	Serum cholesterol QTL 35	2.6	0.0073	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	33311673	78311673	Rat
1576317	Eutr2	Estrogen induced uterine response QTL 2		0.01	uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	39526924	84526924	Rat
1331773	Scl26	Serum cholesterol level QTL 26	3.065		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	48523123	91770353	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	60601597	137492949	Rat
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	91770353	Rat
61359	Eaex	Experimental allergic encephalomyelitis QTL x	3		nervous system integrity trait (VT:0010566)	post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)	5	60511627	105511627	Rat
8662454	Vetf3	Vascular elastic tissue fragility QTL 3	27.4		artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	5	7065535	74335773	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	36460764	136631402	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	64589016	109589016	Rat
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	87027358	Rat
8552954	Pigfal14	Plasma insulin-like growth factor 1 level QTL 14	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	26023211	71023211	Rat
2316954	Rf57	Renal function QTL 57	0		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	64589016	93503770	Rat
2316959	Gluco59	Glucose level QTL 59	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	56546393	101546393	Rat
1600358	Mamtr5	Mammary tumor resistance QTL 5			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	23671493	68671493	Rat
2316957	Pur21	Proteinuria QTL 21	6.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	5	64589016	91762830	Rat

Markers in Region

RH129336

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	138,930,450 - 138,930,948 (+)	MAPPER	mRatBN7.2
mRatBN7.2	5	62,498,224 - 62,498,442 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	63,918,395 - 63,918,612	NCBI	Rnor6.0
Rnor_6.0	2	143,925,689 - 143,926,186	NCBI	Rnor6.0
Rnor_5.0	5	68,435,750 - 68,435,967	UniSTS	Rnor5.0
Rnor_5.0	2	160,337,315 - 160,337,812	UniSTS	Rnor5.0
RGSC_v3.4	2	143,954,988 - 143,955,485	UniSTS	RGSC3.4
RGSC_v3.4	5	64,850,065 - 64,850,282	UniSTS	RGSC3.4
Celera	5	65,096,714 - 65,096,931	UniSTS
Celera	2	133,415,252 - 133,415,749	UniSTS
RH 3.4 Map	2	860.6	UniSTS
Cytogenetic Map	2	q26	UniSTS
Cytogenetic Map	5	q22	UniSTS

BF390824

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	62,480,330 - 62,480,496 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	63,900,483 - 63,900,648	NCBI	Rnor6.0
Rnor_5.0	5	68,417,860 - 68,418,025	UniSTS	Rnor5.0
RGSC_v3.4	5	64,832,150 - 64,832,315	UniSTS	RGSC3.4
Celera	5	65,114,712 - 65,114,877	UniSTS
RH 3.4 Map	5	413.6	UniSTS
Cytogenetic Map	5	q22	UniSTS

AA924460

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	62,498,132 - 62,498,305 (+)	MAPPER	mRatBN7.2
mRatBN7.2	2	138,930,587 - 138,931,503 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	143,925,826 - 143,926,741	NCBI	Rnor6.0
Rnor_6.0	5	63,918,303 - 63,918,475	NCBI	Rnor6.0
Rnor_5.0	5	68,435,658 - 68,435,830	UniSTS	Rnor5.0
Rnor_5.0	2	160,336,760 - 160,337,675	UniSTS	Rnor5.0
RGSC_v3.4	2	143,955,125 - 143,956,040	UniSTS	RGSC3.4
RGSC_v3.4	5	64,849,973 - 64,850,145	UniSTS	RGSC3.4
Celera	5	65,096,851 - 65,097,023	UniSTS
Celera	2	133,415,389 - 133,416,304	UniSTS
RH 3.4 Map	5	409.7	UniSTS
Cytogenetic Map	2	q26	UniSTS
Cytogenetic Map	5	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	92	59	6	356	192	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_145723	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593152	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109285	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109286	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287172	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287173	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287174	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005504369	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005504370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC142180	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF115435	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474056	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225936	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000007641 ⟹ ENSRNOP00000007641

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	67,241,727 - 67,302,218 (+)	Ensembl
mRatBN7.2 Ensembl	5	62,446,187 - 62,504,451 (+)	Ensembl
Rnor_6.0 Ensembl	5	63,870,432 - 63,922,730 (+)	Ensembl

RefSeq Acc Id:

NM_145723 ⟹ NP_663775

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	67,241,743 - 67,298,109 (+)	NCBI
mRatBN7.2	5	62,446,194 - 62,502,562 (+)	NCBI
Rnor_6.0	5	63,866,346 - 63,922,730 (+)	NCBI
Rnor_5.0	5	68,383,379 - 68,443,631 (+)	NCBI
RGSC_v3.4	5	64,798,013 - 64,854,400 (+)	RGD
Celera	5	65,092,596 - 65,149,083 (-)	RGD

Sequence:

show sequence

CGGCCTCGAGCCCCTAGGCGGGAGACTTCATCTTGTCATCGTCCGCATTCTGAGCCCTCTCTCC
AGCTAGGTGTTTCTGTATTAGAGGAGAGAGCTGCTGTACGAGCTAGCAGCTGCCCAGGCTGCAG
GATGTCCGAAGATGAGGAAAAGGTGAAGCTACGCAGGCTTGAACCAGCCATCCAGAAATTCACC
AAGATCGTGATCCCAACAGACCTGGAGAGGCTAAAGAAGCACCAGATAAACATCGAGAAGTATC
AACGGTGCAGAATCTGGGACAAGTTGCATGAAGAGCACATCAATGCCGGGCGCACTGTTCAGCA
ACTGCGCTCCAATATCCGAGAAATGGAGAAGCTTTGCTTAAAAGTGCACAAAGATGATCTGATC
CTTTTGAAGCGAATGATAGATCCTATGAAGGAAGCAGCAGCAGCCGCCACAGCCGAGTTTCTCC
AGCTCCACTTGGAATCTGTGGAAGAACTCAAGAAACAAGTCAAGAATGAAGAAGCTTTACTACA
GCCTTCTCTGACCAGATCCACAACCATTGATGGAGTCCACACTGGAGAGGCTGAAGCTGCTTCC
CAGAGTCTGACTCAGATATATGCCTTGCCTGAAATTCCTCGAGACCAAAATGCTGCTGAGTCCT
GGGAAACCTTAGAAGCGGACTTAATTGAGCTTAGCCATCTGGTCACCGATATGTCCCTCCTAGT
AAATTCTCAGCAGGAGAAGATTGACAGCATTGCAGACCATGTCAACAGTGCTGCTGTGAATGTT
GAAGAGGGAACCAAAAACTTGCAGAAGGCTGCAAAATACAAGCTGGCAGCCCTGCCTGTGGCAG
GTGCAGTCATCGGAGGAGTGGTGGGGGGTCCCATCGGCCTCCTCGCAGGCTTCAAAGTGGCAGG
AATTGCAGCTGCACTTGGTGGTGGGGTGTTAGGCTTCACAGGTGGAAAATTGATACAAAGAAGG
AAACAGAAAATGATGGAGAAGCTCACTTCCAGCTGTCCAGATCTCCCTAGCCAAAGTGACAAAA
AATGCAGTTAAAGCCCAGCTTCCAGCTGGTACTGTGCACCCGACCTAAGGAGCAACTTGCTGGT
GTTGGAACAGTGTTAAGAAGTGGCTCCCCCTGTCCATGCAGCCTTGAGCCACCATAAGTGGACG
TGTTTGTTTGCTGGGTGTTAATGGAGATTTTAGAGGTGGAGGAGCCTGGGCAGAGGGTCCGTCA
GTCAAGTTTAAAGACTCCAAAGAGCAAAGGTTCAGCCTAGCAATGTGAAAACTGGATCTGTAAC
TCTAAGGATCTAAGATGTGTAGGAATATATTGGATGCCTGAGGGTCAGTGTGTTTGTAGAATGT
TTCTTCCTATAGGGAGGAACAGAGTGTGAGTCAGGAGTCTTTCTGTCAGGTAGGGATGTGCTCA
GCAGGGGGCACAGGTGAACTTCTTGTAGACTTGAGAACTGTTGTACTTGGATCCATCTAAATTT
TCTGGGGAAGGAAATTAATACTCCAAAATAGAAAGAGAAGCCCATTTTCTCTTTATAGTGTCTT
CACTGTGGCACGGGTGTTTTCCTGGTCTTTCCTGTCTCCAGGTGAGGAGTACAGAACCTCCCCA
CCCCACATGCTAGGCCTGCTGACCACCCGTCAAGCCCATTTCCTGCTGCCAAGTCTGAAGACTA
TCCGCTTCCAGGGT

hide sequence

RefSeq Acc Id:

XM_006238024 ⟹ XP_006238086

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	67,241,749 - 67,302,228 (+)	NCBI
mRatBN7.2	5	62,446,207 - 62,506,108 (+)	NCBI
Rnor_6.0	5	63,866,376 - 63,926,276 (+)	NCBI
Rnor_5.0	5	68,383,379 - 68,443,631 (+)	NCBI

Sequence:

show sequence

GGCTGGCGGGCTGCCCCCTCGGGGGCGCTGGGCTACGACGTGGCACCGCGGGCCGGGCTGTGGA
CGCACCGGAGAGGCACCGGTCTCCAAGCCCGGCTTCGGACTTCATCTTGTCATCGTCCGCATTC
TGAGCCCTCTCTCCAGCTAGGTGTTTCTGTATTAGAGGAGAGAGCTGCTGTACGAGCTAGCAGC
TCGCCAGGCTGCAGGATGTCCGAAGATGAGGAAAAGGTGAAGCTACGCAGGCTTGAACCAGCCA
TCCAGAAATTCACCAAGATCGTGATCCCAACAGACCTGGAGAGGCTAAAGAAGCACCAGATAAA
CATCGAGAAGTATCAACGGTGCAGAATCTGGGACAAGTTGCATGAAGAGCACATCAATGCCGGG
CGCACTGTTCAGCAACTGCGCTCCAATATCCGAGAAATGGAGAAGCTTTGCTTAAAAGTGCACA
AAGATGATCTGATCCTTTTGAAGCGAATGATAGATCCTATGAAGGAAGCAGCAGCAGCCGCCAC
AGCCGAGTTTCTCCAGCTCCACTTGGAATCTGTGGAAGAACTCAAGAAACAAGTCAAGAATGAA
GAAGCTTTACTACAGCCTTCTCTGACCAGATCCACAACCATTGATGGAGTCCACACTGGAGAGG
CTGAAGCTGCTTCCCAGAGTCTGACTCAGATATATGCCTTGCCTGAAATTCCTCGAGACCAAAA
TGCTGCTGAGTCCTGGGAAACCTTAGAAGCGGACTTAATTGAGCTTAGCCATCTGGTCACCGAT
ATGTCCCTCCTAGTAAATTCTCAGCAGGAGAAGATTGACAGCATTGCAGACCATGTCAACAGTG
CTGCTGTGAATGTTGAAGAGGGAACCAAAAACTTGCAGAAGGCTGCAAAATACAAGCTGGCAGC
CCTGCCTGTGGCAGGTGCAGTCATCGGAGGAGTGGTGGGGGGTCCCATCGGCCTCCTCGCAGGC
TTCAAAGTGGCAGGAATTGCAGCTGCACTTGGTGGTGGGGTGTTAGGCTTCACAGGTGGAAAAT
TGATACAAAGAAGGAAACAGAAAATGATGGAGAAGCTCACTTCCAGCTGTCCAGATCTCCCTAG
CCAAAGTGACAAAAAATGCAGTTAAAGCCCAGCTTCCAGCTGGTACTGTGCACCCGACCTAAGG
AGCAACTTGCTGGTGTTGGAACAGTGTTAAGAAGTGGCTCCCCCTGTCCATGCAGCCTTGAGCC
ACCATAAGTGGACGTGTTTGTTTGCTGGGTGTTAATGGAGATTTTAGAGGTGGAGGAGCCTGGG
CAGAGGGTCCGTCAGGTCAAGTTTAAAGACTGCCAAAGAGCAAAGGTTCAGCCTAGCAATGTGA
AAACTGGATCTGTAACTCTAAGGATCTAAGATGTGTAGGAATATATTGGATGCCTGAGGGTCAG
TGTGTTTGTAGAATGTTTCTTCCTATAGGGAGGAACAGAGTGTGAGTCAGGAGTCTTTCTGTCA
GGTAGGGATGTGCTCAGCAGGGGGCACAGGTGAACTTCTTGTAGACTTGAGAACTGTTGTACTT
GGATCCATCTAAATTTTCTGGGGAAGGAAATTAATACTCCAAAATAGAAAGAGAAGCCCATTTT
CTCTTTATAGTGTCTTCACTGTGGCACGGGTGTTTTCCTGGTCTTTCCTGTCTCCAGGTGAGGA
GTACAGAACCTCCCCACCCCACATGCTAGGCCTGCTGACCACCCGTCAAGCCCATTTCCTGCTG
CCAAGTCTGAAGACTATCCGCTTCCAGGGTGAATTCTACGTCTGTCATAAGGATTTTTCTCATA
ATCTGCCTTCTTAAATAGCTTTCCATCTCTAGCCACCCTACCTGTAATCTCTTTAGTTGAAAAA
GATTTAAATATTTCCAAAATTATTTGGGCTAAGGGGAGTACAAGATCACACCCCAGGGCACTTT
AGAAGTGGGTTTAGAAGGGGTTGGCATACTTGCCTCAAGGAATCGAGTTCCCTGAGTCTTCTTG
GAGGTCCAAGAAGGAGCGTTCTACCTCACATCTCTCACTGCTGCCTTTCCCAGGTCGTCTCCCC
TCCTGCCGCTGTTTGCCCAATGTTCACACTCAACTTCTCTCACATTCTAGACAGCCAAGTCCAC
GATTCAGACTCAAGGAAAGATCCGTGGTGCTAACCCAATAGTTGACATGGACAGCAGCCATGGT
CTAGACCAATTCCATGTTTGTCTCAAAACAGAAAGGTTTGAGATATAGAGAAAAGGAATAGGAA
GAAGCCACTGGTCCCTTCAGTTATCTCTTCTTGAGGAAAGTGCACCATCAGCCAGAGCACAGGT
TCAAGGGCCGAAGGGTTTACCGCTTAGCTTCTTTTAAGAGATGAGTTGATGTTTGACCTCTGTC
GGTTGCTATCTTTCCCTCTGTGTCACAACAGCCTTCCCTTTAATGCCTGTGAGTCTTACCAGTG
CATCCCTATGAAACAAAGCACTACATCTCAGTAAAAGATTGGGAAGTATCAAGTACTTCTTCTC
TGCTGACTTAAGACTTTAATAATAAACAAACAAACAAACAAAAACTTTGAATAATTGTCGGATC
CTGAAATATTGCCAAACACACTGGGCATTAAGTATTTAAAGTAATCACTTTTAACGTCATTCTT
TGTTCTCTAGTTCTTGCTGCTCTTTTAAACCCGAGCATGTCAAACCCGAGCAGGGGACAGGCAG
AACTCATACAGATTCTACTTTAAACAAGATTATTTTTGTTTCGTTTCATTTTTTTCCAAGAACG
TTTCTCTGTATAGCCCTGGCCTGGCTGTCCTGGAACTTGCTGTGTAGACCATGCCAGCCTTGAA
CTCAGAGATCCACCTGCCTCTGCCTCCTGAGTGCTGGAAGTAAAGGTGTGTCACCACACCCACC
CAAAACAAGGGTCTTGAACTTTGGCCCTCGGGTAATTCTGACAGTCAATTCCGCCTGCTTAGCT
GGAATTGTAAGAATAAACAGTGTTGTTCAGTTCTTTAATCTCCCGTGTTCTACTTCATCTTCCT
CAGCTTAATACTCAATTCCATTAATCCCCAAAGTGCCATCAGTCAGCGTGTCCACAGCACACGG
AAGTCAAAGAGGCAGGGCGAAGCTTGTATGTGAACTCACACCCTCTGGACTTAGCATCTTTGCT
GAGCTAGTGTGGGACTGTTGATGTGTTCATGACCCATCAGTGTTCAACTTTTGACTCTAGCCAT
CCTAATGCTTGAGGAACTACAGTCCTCTAAAATTCCATTATACTTTAAAGTTATTTAGAAATTG
TTTCTCATTTCTCCACAATAGAATCCAATAGCCAACTTTTGTGGACATTTCTTAGAAGTGTTTA
ATCAACTATAAATGATATAAAGTACTAAAAAGTATAAATTAGTCAATATGACACAGAAGTGATC
TTAAAAGTGAATTTAATATGACCCATACTGTCTAGTTAAATTTATCATCTCTGTGATTTATGTC
TTATTTTTATTTCAGCTAGTTACAAAGAATCATTTTAATATCTTAAAATTTGTAGACTTCATTT
CAGTAATGGCAGTTCTCCAAAAGACGTTTTTGATATCATAATCTGATAATTTCTCTGAAAACTT
GGTGTAACCCACAGTAAAAAAAAAATGTATTAGAATTGAATATATGTTCATTGAAAATGTTTAC
CATTATGTGCAATACATTCTGATGTTTTGCTTTTTCAACATGCTAATTTCAACCCGCTCTGCCT
GTCTCGGTCTACAAATAGATTACTACCCTCAGTTTTCAGAAAACACCCTTCCCTAAGGAAGAAC
TGGTGTCTCCCAAGCAGTGTGCCAGGCACTCACCAGGCCTGTGTGGACAGGGTAACGGGGCCTC
CGAGGAACGAAGGCTCAGTCTCCGGTTCCAAAGGCAGAAGGCCTGGATGGGGCGGCTGCTGAGC
CCCACTCTGCCATGCTCTGCTGCCTCAGAGCTCAGAGACTGCAAGGCCCGCTGTGAACAACCCA
GACCCCTGATTTACTACTTTGCCTTCTGGCGCCTCACCAGGTGTCCACAGCCTGCTCTTAATTG
TGACCATGCATACAACACACAGCTCAAGTATAAAATGAGCACCACTATCCCACCCCACCCTCTA
CACATTGGTTCATATAGGCTATGATCACTGTTCAAAATGTTTTATATAATTAAAAGTAAACACG
ACTTTTAAAAACAAATCTCTCAGAGCTTTTAAAATCAATTAATCATTACGCTTTAAATGATGCC
CCCTGGGAAGCTGTGCACAAACGGTAGGGGGTGGGTAATAAGCTATTTCTGAACATCTGCTTTT
GGATTGCCACCAAAACAATTGCATGTTAAATAAGAAAAGCCACGTCCATTGTGTTGGCCAGACT
GTTTTCCCAAACCTTGTGACTCTGCTCTTTTCCCATCTCAATTTTGTGTCTTCTATTGGCGTTA
ACTCTCCTACCTCACACGAGAGCCAGGGACCTAGCATGCCTAGAGGGCGAACATGCTGAAGCTA
CCTAGAATGGCCAGACTTCTGCATCGTGGATGGGGGTTTCCTGAAACTCCTAACTGGCCACAGA
TGGCCGGCCGGCCTGCCTGCCTGCCTGCCTGCCTGCCTTCCATGCTCATGTTTTCTGCAGAGTG
AGGACTGGAAACTGGTAACACCTACTGTTGACAAGAAGTTTGGAAACCCAACCACAAATATCTA
GCACATAGTATTTCCTTCCAGTAAAAGGCCAGAAGCCAAACCTTTTGAGTTGTTAGAAAGCAAA
GGCATTTCTCAGGAATGCCTTAGAAGCCCTTCACTGATAGCATGGACTCTGGATAGAGGAGTGC
AAGCCTGGAGCAAGGTCCCCCTTGGGCAAGCAATAGTTTATCATCACAGAGAGGAATTCAGATG
TTGCTCTCAGGTGCTTACAGAGGTCTGATGACATCCCCAAAGTCTCCAGAGGCTTGACCAGTGC
TTCTCCTCTGGCCCCGAGTTTTAACACACATTCAGATTCTGTTTGTATGTGTGTGTGGTTTTGT
TGTTTCTGTTTTCTGCAATTGGGTTTTACTGGAAGCCCAGGCTCGTTTTGAAGTTGCAATCCTC
CTGCTGGGATTACATACATCCAGCTCTGTTTTATAACTGCTATTAACACGGGTTCCTAACAAGT
GGTTCTGTTTGTACTCATCAGTTTGGCACCATTTCACAGAAGAACTTGTGTGTTATAAATAATA
ATAAAAGAGTTACGTATCTACATTGCTATCTTCAAAGAAACTAACTTGTGACAAAAATACATCT
GTGCAATGTTAACCCAACAAATATATTGGAATAAAAACATAAAAAGTGTCAAATGA

hide sequence

RefSeq Acc Id:

XM_017593152 ⟹ XP_017448641

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	67,245,614 - 67,302,228 (+)	NCBI
mRatBN7.2	5	62,446,195 - 62,506,108 (+)	NCBI
Rnor_6.0	5	63,870,216 - 63,926,276 (+)	NCBI

Sequence:

show sequence

ATCTTTTTCTTTGTCCTTGATGCTCTGAGTTTCCTATTACGTGCTGAGACTTCATCTTGTCATC
GTCCGCATTCTGAGCCCTCTCTCCAGCTAGGTGTTTCTGTATTAGAGGAGAGAGCTGCTGTACG
AGCTAGCAGCTCGCCAGGCTGCAGGATGTCCGAAGATGAGGAAAAGGTGAAGCTACGCAGGCTT
GAACCAGCCATCCAGAAATTCACCAAGATCGTGATCCCAACAGACCTGGAGAGGCTAAAGAAGC
ACCAGATAAACATCGAGAAGTATCAACGGTGCAGAATCTGGGACAAGTTGCATGAAGAGCACAT
CAATGCCGGGCGCACTGTTCAGCAACTGCGCTCCAATATCCGAGAAATGGAGAAGCTTTGCTTA
AAAGTGCACAAAGATGATCTGATCCTTTTGAAGCGAATGATAGATCCTATGAAGGAAGCAGCAG
CAGCCGCCACAGCCGAGTTTCTCCAGCTCCACTTGGAATCTGTGGAAGAACTCAAGAAACAAGT
CAAGAATGAAGAAGCTTTACTACAGCCTTCTCTGACCAGATCCACAACCATTGATGGAGTCCAC
ACTGGAGAGGCTGAAGCTGCTTCCCAGAGTCTGACTCAGATATATGCCTTGCCTGAAATTCCTC
GAGACCAAAATGCTGCTGAGTCCTGGGAAACCTTAGAAGCGGACTTAATTGAGCTTAGCCATCT
GGTCACCGATATGTCCCTCCTAGTAAATTCTCAGCAGGAGAAGATTGACAGCATTGCAGACCAT
GTCAACAGTGCTGCTGTGAATGTTGAAGAGGGAACCAAAAACTTGCAGAAGGCTGCAAAATACA
AGCTGGCAGCCCTGCCTGTGGCAGGTGCAGTCATCGGAGGAGTGGTGGGGGGTCCCATCGGCCT
CCTCGCAGGCTTCAAAGTGGCAGGAATTGCAGCTGCACTTGGTGGTGGGGTGTTAGGCTTCACA
GGTGGAAAATTGATACAAAGAAGGAAACAGAAAATGATGGAGAAGCTCACTTCCAGCTGTCCAG
ATCTCCCTAGCCAAAGTGACAAAAAATGCAGTTAAAGCCCAGCTTCCAGCTGGTACTGTGCACC
CGACCTAAGGAGCAACTTGCTGGTGTTGGAACAGTGTTAAGAAGTGGCTCCCCCTGTCCATGCA
GCCTTGAGCCACCATAAGTGGACGTGTTTGTTTGCTGGGTGTTAATGGAGATTTTAGAGGTGGA
GGAGCCTGGGCAGAGGGTCCGTCAGGTCAAGTTTAAAGACTGCCAAAGAGCAAAGGTTCAGCCT
AGCAATGTGAAAACTGGATCTGTAACTCTAAGGATCTAAGATGTGTAGGAATATATTGGATGCC
TGAGGGTCAGTGTGTTTGTAGAATGTTTCTTCCTATAGGGAGGAACAGAGTGTGAGTCAGGAGT
CTTTCTGTCAGGTAGGGATGTGCTCAGCAGGGGGCACAGGTGAACTTCTTGTAGACTTGAGAAC
TGTTGTACTTGGATCCATCTAAATTTTCTGGGGAAGGAAATTAATACTCCAAAATAGAAAGAGA
AGCCCATTTTCTCTTTATAGTGTCTTCACTGTGGCACGGGTGTTTTCCTGGTCTTTCCTGTCTC
CAGGTGAGGAGTACAGAACCTCCCCACCCCACATGCTAGGCCTGCTGACCACCCGTCAAGCCCA
TTTCCTGCTGCCAAGTCTGAAGACTATCCGCTTCCAGGGTGAATTCTACGTCTGTCATAAGGAT
TTTTCTCATAATCTGCCTTCTTAAATAGCTTTCCATCTCTAGCCACCCTACCTGTAATCTCTTT
AGTTGAAAAAGATTTAAATATTTCCAAAATTATTTGGGCTAAGGGGAGTACAAGATCACACCCC
AGGGCACTTTAGAAGTGGGTTTAGAAGGGGTTGGCATACTTGCCTCAAGGAATCGAGTTCCCTG
AGTCTTCTTGGAGGTCCAAGAAGGAGCGTTCTACCTCACATCTCTCACTGCTGCCTTTCCCAGG
TCGTCTCCCCTCCTGCCGCTGTTTGCCCAATGTTCACACTCAACTTCTCTCACATTCTAGACAG
CCAAGTCCACGATTCAGACTCAAGGAAAGATCCGTGGTGCTAACCCAATAGTTGACATGGACAG
CAGCCATGGTCTAGACCAATTCCATGTTTGTCTCAAAACAGAAAGGTTTGAGATATAGAGAAAA
GGAATAGGAAGAAGCCACTGGTCCCTTCAGTTATCTCTTCTTGAGGAAAGTGCACCATCAGCCA
GAGCACAGGTTCAAGGGCCGAAGGGTTTACCGCTTAGCTTCTTTTAAGAGATGAGTTGATGTTT
GACCTCTGTCGGTTGCTATCTTTCCCTCTGTGTCACAACAGCCTTCCCTTTAATGCCTGTGAGT
CTTACCAGTGCATCCCTATGAAACAAAGCACTACATCTCAGTAAAAGATTGGGAAGTATCAAGT
ACTTCTTCTCTGCTGACTTAAGACTTTAATAATAAACAAACAAACAAACAAAAACTTTGAATAA
TTGTCGGATCCTGAAATATTGCCAAACACACTGGGCATTAAGTATTTAAAGTAATCACTTTTAA
CGTCATTCTTTGTTCTCTAGTTCTTGCTGCTCTTTTAAACCCGAGCATGTCAAACCCGAGCAGG
GGACAGGCAGAACTCATACAGATTCTACTTTAAACAAGATTATTTTTGTTTCGTTTCATTTTTT
TCCAAGAACGTTTCTCTGTATAGCCCTGGCCTGGCTGTCCTGGAACTTGCTGTGTAGACCATGC
CAGCCTTGAACTCAGAGATCCACCTGCCTCTGCCTCCTGAGTGCTGGAAGTAAAGGTGTGTCAC
CACACCCACCCAAAACAAGGGTCTTGAACTTTGGCCCTCGGGTAATTCTGACAGTCAATTCCGC
CTGCTTAGCTGGAATTGTAAGAATAAACAGTGTTGTTCAGTTCTTTAATCTCCCGTGTTCTACT
TCATCTTCCTCAGCTTAATACTCAATTCCATTAATCCCCAAAGTGCCATCAGTCAGCGTGTCCA
CAGCACACGGAAGTCAAAGAGGCAGGGCGAAGCTTGTATGTGAACTCACACCCTCTGGACTTAG
CATCTTTGCTGAGCTAGTGTGGGACTGTTGATGTGTTCATGACCCATCAGTGTTCAACTTTTGA
CTCTAGCCATCCTAATGCTTGAGGAACTACAGTCCTCTAAAATTCCATTATACTTTAAAGTTAT
TTAGAAATTGTTTCTCATTTCTCCACAATAGAATCCAATAGCCAACTTTTGTGGACATTTCTTA
GAAGTGTTTAATCAACTATAAATGATATAAAGTACTAAAAAGTATAAATTAGTCAATATGACAC
AGAAGTGATCTTAAAAGTGAATTTAATATGACCCATACTGTCTAGTTAAATTTATCATCTCTGT
GATTTATGTCTTATTTTTATTTCAGCTAGTTACAAAGAATCATTTTAATATCTTAAAATTTGTA
GACTTCATTTCAGTAATGGCAGTTCTCCAAAAGACGTTTTTGATATCATAATCTGATAATTTCT
CTGAAAACTTGGTGTAACCCACAGTAAAAAAAAAATGTATTAGAATTGAATATATGTTCATTGA
AAATGTTTACCATTATGTGCAATACATTCTGATGTTTTGCTTTTTCAACATGCTAATTTCAACC
CGCTCTGCCTGTCTCGGTCTACAAATAGATTACTACCCTCAGTTTTCAGAAAACACCCTTCCCT
AAGGAAGAACTGGTGTCTCCCAAGCAGTGTGCCAGGCACTCACCAGGCCTGTGTGGACAGGGTA
ACGGGGCCTCCGAGGAACGAAGGCTCAGTCTCCGGTTCCAAAGGCAGAAGGCCTGGATGGGGCG
GCTGCTGAGCCCCACTCTGCCATGCTCTGCTGCCTCAGAGCTCAGAGACTGCAAGGCCCGCTGT
GAACAACCCAGACCCCTGATTTACTACTTTGCCTTCTGGCGCCTCACCAGGTGTCCACAGCCTG
CTCTTAATTGTGACCATGCATACAACACACAGCTCAAGTATAAAATGAGCACCACTATCCCACC
CCACCCTCTACACATTGGTTCATATAGGCTATGATCACTGTTCAAAATGTTTTATATAATTAAA
AGTAAACACGACTTTTAAAAACAAATCTCTCAGAGCTTTTAAAATCAATTAATCATTACGCTTT
AAATGATGCCCCCTGGGAAGCTGTGCACAAACGGTAGGGGGTGGGTAATAAGCTATTTCTGAAC
ATCTGCTTTTGGATTGCCACCAAAACAATTGCATGTTAAATAAGAAAAGCCACGTCCATTGTGT
TGGCCAGACTGTTTTCCCAAACCTTGTGACTCTGCTCTTTTCCCATCTCAATTTTGTGTCTTCT
ATTGGCGTTAACTCTCCTACCTCACACGAGAGCCAGGGACCTAGCATGCCTAGAGGGCGAACAT
GCTGAAGCTACCTAGAATGGCCAGACTTCTGCATCGTGGATGGGGGTTTCCTGAAACTCCTAAC
TGGCCACAGATGGCCGGCCGGCCTGCCTGCCTGCCTGCCTGCCTGCCTTCCATGCTCATGTTTT
CTGCAGAGTGAGGACTGGAAACTGGTAACACCTACTGTTGACAAGAAGTTTGGAAACCCAACCA
CAAATATCTAGCACATAGTATTTCCTTCCAGTAAAAGGCCAGAAGCCAAACCTTTTGAGTTGTT
AGAAAGCAAAGGCATTTCTCAGGAATGCCTTAGAAGCCCTTCACTGATAGCATGGACTCTGGAT
AGAGGAGTGCAAGCCTGGAGCAAGGTCCCCCTTGGGCAAGCAATAGTTTATCATCACAGAGAGG
AATTCAGATGTTGCTCTCAGGTGCTTACAGAGGTCTGATGACATCCCCAAAGTCTCCAGAGGCT
TGACCAGTGCTTCTCCTCTGGCCCCGAGTTTTAACACACATTCAGATTCTGTTTGTATGTGTGT
GTGGTTTTGTTGTTTCTGTTTTCTGCAATTGGGTTTTACTGGAAGCCCAGGCTCGTTTTGAAGT
TGCAATCCTCCTGCTGGGATTACATACATCCAGCTCTGTTTTATAACTGCTATTAACACGGGTT
CCTAACAAGTGGTTCTGTTTGTACTCATCAGTTTGGCACCATTTCACAGAAGAACTTGTGTGTT
ATAAATAATAATAAAAGAGTTACGTATCTACATTGCTATCTTCAAAGAAACTAACTTGTGACAA
AAATACATCTGTGCAATGTTAACCCAACAAATATATTGGAATAAAAACATAAAAAGTGTCAAAT
GA

hide sequence

RefSeq Acc Id:

XM_039109285 ⟹ XP_038965213

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	67,241,673 - 67,294,041 (+)	NCBI
mRatBN7.2	5	62,446,138 - 62,493,838 (+)	NCBI

RefSeq Acc Id:

XM_039109286 ⟹ XP_038965214

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	67,241,673 - 67,294,041 (+)	NCBI
mRatBN7.2	5	62,446,138 - 62,496,276 (+)	NCBI

RefSeq Acc Id:

XM_063287172 ⟹ XP_063143242

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	67,241,673 - 67,294,041 (+)	NCBI

RefSeq Acc Id:

XM_063287173 ⟹ XP_063143243

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	67,241,673 - 67,276,070 (+)	NCBI

RefSeq Acc Id:

XM_063287174 ⟹ XP_063143244

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	67,241,748 - 67,276,070 (+)	NCBI

RefSeq Acc Id:

XR_005504369

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	67,241,673 - 67,297,384 (+)	NCBI
mRatBN7.2	5	62,446,138 - 62,501,815 (+)	NCBI

RefSeq Acc Id:

XR_005504370

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	67,241,673 - 67,297,384 (+)	NCBI
mRatBN7.2	5	62,446,138 - 62,501,815 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_663775	(Get FASTA)	NCBI Sequence Viewer
	XP_006238086	(Get FASTA)	NCBI Sequence Viewer
	XP_017448641	(Get FASTA)	NCBI Sequence Viewer
	XP_038965213	(Get FASTA)	NCBI Sequence Viewer
	XP_038965214	(Get FASTA)	NCBI Sequence Viewer
	XP_063143242	(Get FASTA)	NCBI Sequence Viewer
	XP_063143243	(Get FASTA)	NCBI Sequence Viewer
	XP_063143244	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAD11435	(Get FASTA)	NCBI Sequence Viewer
	EDL78196	(Get FASTA)	NCBI Sequence Viewer
	EDL78197	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000007641
	ENSRNOP00000007641.2
GenBank Protein	Q9Z158	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_663775 ⟸ NM_145723

- UniProtKB:

Q9Z158 (UniProtKB/Swiss-Prot), A6KJF9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSEDEEKVKLRRLEPAIQKFTKIVIPTDLERLKKHQINIEKYQRCRIWDKLHEEHINAGRTVQQ
LRSNIREMEKLCLKVHKDDLILLKRMIDPMKEAAAAATAEFLQLHLESVEELKKQVKNEEALLQ
PSLTRSTTIDGVHTGEAEAASQSLTQIYALPEIPRDQNAAESWETLEADLIELSHLVTDMSLLV
NSQQEKIDSIADHVNSAAVNVEEGTKNLQKAAKYKLAALPVAGAVIGGVVGGPIGLLAGFKVAG
IAAALGGGVLGFTGGKLIQRRKQKMMEKLTSSCPDLPSQSDKKCS

hide sequence

RefSeq Acc Id:	XP_006238086 ⟸ XM_006238024
- Peptide Label:	isoform X1
- UniProtKB:	Q9Z158 (UniProtKB/Swiss-Prot), A6KJF9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSEDEEKVKLRRLEPAIQKFTKIVIPTDLERLKKHQINIEKYQRCRIWDKLHEEHINAGRTVQQ LRSNIREMEKLCLKVHKDDLILLKRMIDPMKEAAAAATAEFLQLHLESVEELKKQVKNEEALLQ PSLTRSTTIDGVHTGEAEAASQSLTQIYALPEIPRDQNAAESWETLEADLIELSHLVTDMSLLV NSQQEKIDSIADHVNSAAVNVEEGTKNLQKAAKYKLAALPVAGAVIGGVVGGPIGLLAGFKVAG IAAALGGGVLGFTGGKLIQRRKQKMMEKLTSSCPDLPSQSDKKCS hide sequence

RefSeq Acc Id:	XP_017448641 ⟸ XM_017593152
- Peptide Label:	isoform X1
- UniProtKB:	Q9Z158 (UniProtKB/Swiss-Prot), A6KJF9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSEDEEKVKLRRLEPAIQKFTKIVIPTDLERLKKHQINIEKYQRCRIWDKLHEEHINAGRTVQQ LRSNIREMEKLCLKVHKDDLILLKRMIDPMKEAAAAATAEFLQLHLESVEELKKQVKNEEALLQ PSLTRSTTIDGVHTGEAEAASQSLTQIYALPEIPRDQNAAESWETLEADLIELSHLVTDMSLLV NSQQEKIDSIADHVNSAAVNVEEGTKNLQKAAKYKLAALPVAGAVIGGVVGGPIGLLAGFKVAG IAAALGGGVLGFTGGKLIQRRKQKMMEKLTSSCPDLPSQSDKKCS hide sequence

Ensembl Acc Id:

ENSRNOP00000007641 ⟸ ENSRNOT00000007641

RefSeq Acc Id:	XP_038965214 ⟸ XM_039109286
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038965213 ⟸ XM_039109285
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063143242 ⟸ XM_063287172
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063143243 ⟸ XM_063287173
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063143244 ⟸ XM_063287174
- Peptide Label:	isoform X5

Protein Domains

t-SNARE coiled-coil homology

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9Z158-F1-model_v2	AlphaFold	Q9Z158	1-301	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:708499	AgrOrtholog
BioCyc Gene	G2FUF-41361	BioCyc
Ensembl Genes	ENSRNOG00000005801	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000007641	ENTREZGENE
	ENSRNOT00000007641.5	UniProtKB/Swiss-Prot
Gene3D-CATH	1.20.5.110	UniProtKB/Swiss-Prot
InterPro	SNARE	UniProtKB/Swiss-Prot
	STX17	UniProtKB/Swiss-Prot
	Syntaxin	UniProtKB/Swiss-Prot
	Syntaxin/epimorphin_CS	UniProtKB/Swiss-Prot
	T_SNARE_dom	UniProtKB/Swiss-Prot
KEGG Report	rno:252853	UniProtKB/Swiss-Prot
NCBI Gene	252853	ENTREZGENE
PANTHER	PTHR19957	UniProtKB/Swiss-Prot
	PTHR19957:SF139	UniProtKB/Swiss-Prot
PhenoGen	Stx17	PhenoGen
PROSITE	SYNTAXIN	UniProtKB/Swiss-Prot
	T_SNARE	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000005801	RatGTEx
SMART	t_SNARE	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF47661	UniProtKB/Swiss-Prot
UniProt	A6KJF8_RAT	UniProtKB/TrEMBL
	A6KJF9	ENTREZGENE, UniProtKB/TrEMBL
	Q9Z158	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-07-08	Stx17	syntaxin 17	LOC252853		Symbol updated	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - CTD