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Gene: Pcyt1b (phosphate cytidylyltransferase 1B, choline) Rattus norvegicus

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Symbol:

Pcyt1b (Ensembl: AABR07038849.1)

Name:

phosphate cytidylyltransferase 1B, choline

RGD ID:

708434

Description:

Predicted to enable choline-phosphate cytidylyltransferase activity; identical protein binding activity; and phosphatidylcholine binding activity. Involved in response to vasopressin. Predicted to be located in endoplasmic reticulum. Orthologous to human PCYT1B (phosphate cytidylyltransferase 1B, choline); PARTICIPATES IN glycerophospholipid metabolic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; ammonium chloride.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

CCT B; CCT-beta; Cctbeta; choline phosphate cytidylyltransferase 1 beta; choline-phosphate cytidylyltransferase B; CT B; CTB; CTP:phosphocholine cytidylyltransferase B; phosphate cytidylyltransferase 1, choline, beta; phosphate cytidylyltransferase 1, choline, beta isoform; phosphorylcholine transferase B

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PCYT1B (phosphate cytidylyltransferase 1B, choline)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Pcyt1b (phosphate cytidylyltransferase 1, choline, beta isoform)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pcyt1b (phosphate cytidylyltransferase 1B, choline)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PCYT1B (phosphate cytidylyltransferase 1B, choline)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PCYT1B (phosphate cytidylyltransferase 1B, choline)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pcyt1b (phosphate cytidylyltransferase 1B, choline)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PCYT1B (phosphate cytidylyltransferase 1B, choline)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PCYT1B (phosphate cytidylyltransferase 1B, choline)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pcyt1b (phosphate cytidylyltransferase 1B, choline)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Pcyt1b (phosphate cytidylyltransferase 1B, choline)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	PCYT1B (phosphate cytidylyltransferase 1B, choline)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Pcyt1b (phosphate cytidylyltransferase 1, choline, beta isoform)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pcyt1ba (phosphate cytidylyltransferase 1, choline, beta a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pcyt1ba (phosphate cytidylyltransferase 1, choline, beta a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	PCT1	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	PCT1	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Pcyt2	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Pcyt2	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y18H1A.11	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	pcyt-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	pcyt-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	pcyt1b	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	62,371,934 - 62,465,460 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	62,356,009 - 62,465,459 (+)	Ensembl				GRCr8
mRatBN7.2	X	58,378,090 - 58,471,623 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	58,378,116 - 58,468,935 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	59,837,010 - 59,906,338 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	63,338,109 - 63,407,443 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	60,889,498 - 60,958,732 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	62,727,691 - 62,821,199 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	62,727,755 - 62,818,522 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	63,320,419 - 63,413,884 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	81,023,064 - 81,087,051 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	58,842,540 - 58,906,499 (+)	NCBI		Celera
RGSC_v3.1	X	81,096,355 - 81,160,338 (+)	NCBI
Cytogenetic Map	X	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

juvenile rheumatoid arthritis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-butoxyethanol (ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

acrylamide (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

amphetamine (EXP)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP,ISO)

caffeine (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

fenamidone (ISO)

genistein (ISO)

gentamycin (EXP)

lead diacetate (ISO)

lead(0) (ISO)

lipopolysaccharide (ISO)

lithocholic acid (ISO)

methotrexate (ISO)

methylmercury chloride (ISO)

paracetamol (EXP)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

troglitazone (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

CDP-choline pathway (IEA,ISO,ISS)

lipid metabolic process (IEA)

ovarian follicle development (ISO)

phosphatidylcholine biosynthetic process (IEA,ISO,ISS)

phospholipid biosynthetic process (IEA)

response to vasopressin (IEP)

spermatogenesis (ISO)

Cellular Component

cytoplasm (IEA)

endoplasmic reticulum (IEA,ISO,ISS)

Molecular Function

catalytic activity (IEA)

choline-phosphate cytidylyltransferase activity (IBA,IEA,ISO,ISS)

nucleotidyltransferase activity (IEA)

phosphatidylcholine binding (IBA)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

glycerophospholipid metabolic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Gene structure, expression and identification of a new CTP:phosphocholine cytidylyltransferase beta isoform.	Karim M, etal., Biochim Biophys Acta 2003 Jul 4;1633(1):1-12.
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
6.	GOA pipeline	RGD automated data pipeline
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Functions of membrane binding domain of CTP:phosphocholine cytidylyltransferase in alveolar type II cells.	Ridsdale R, etal., Am J Respir Cell Mol Biol. 2010 Jul;43(1):74-87. doi: 10.1165/rcmb.2009-0231OC. Epub 2009 Aug 14.
9.	Cloning of cytidine triphosphate: phosphocholine cytidylyltransferase mRNA upregulated by a neuropeptide arginine-vasopressin((4-8)) in rat hippocampus.	Xiong Y, etal., Neurosci Lett. 2000 Apr 7;283(2):129-32.

Additional References at PubMed

PMID:12114961	PMID:15143167	PMID:17981805	PMID:19783652	PMID:22871113

Genomics

Comparative Map Data

Pcyt1b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	62,371,934 - 62,465,460 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	62,356,009 - 62,465,459 (+)	Ensembl				GRCr8
mRatBN7.2	X	58,378,090 - 58,471,623 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	58,378,116 - 58,468,935 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	59,837,010 - 59,906,338 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	63,338,109 - 63,407,443 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	60,889,498 - 60,958,732 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	62,727,691 - 62,821,199 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	62,727,755 - 62,818,522 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	63,320,419 - 63,413,884 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	81,023,064 - 81,087,051 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	58,842,540 - 58,906,499 (+)	NCBI		Celera
RGSC_v3.1	X	81,096,355 - 81,160,338 (+)	NCBI
Cytogenetic Map	X	q22	NCBI

PCYT1B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	24,558,087 - 24,672,887 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	24,558,087 - 24,672,677 (-)	Ensembl			hg38	GRCh38
GRCh37	X	24,576,204 - 24,691,004 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	24,486,125 - 24,575,274 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	X	24,339,615 - 24,424,883	NCBI
Celera	X	28,699,089 - 28,813,849 (-)	NCBI		Celera
Cytogenetic Map	X	p22.11	NCBI
HuRef	X	22,318,180 - 22,433,269 (-)	NCBI		HuRef
CHM1_1	X	24,607,786 - 24,722,565 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	24,142,375 - 24,257,164 (-)	NCBI		T2T-CHM13v2.0

Pcyt1b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	92,698,469 - 92,793,557 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	92,698,469 - 92,793,557 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	X	93,654,863 - 93,749,951 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	93,654,863 - 93,749,951 (+)	Ensembl			mm10	GRCm38
MGSCv37	X	90,900,202 - 90,995,287 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	X	89,907,582 - 90,002,667 (+)	NCBI		MGSCv36	mm8
Celera	X	80,576,672 - 80,673,771 (+)	NCBI		Celera
Cytogenetic Map	X	C3	NCBI
cM Map	X	41.28	NCBI

Pcyt1b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955509	4,896,190 - 4,990,149 (-)	Ensembl
ChiLan1.0	NW_004955509	4,896,208 - 4,990,101 (-)	NCBI	ChiLan1.0	ChiLan1.0

PCYT1B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	26,356,526 - 26,471,450 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	26,359,913 - 26,474,830 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	17,155,065 - 17,269,909 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	24,522,460 - 24,611,590 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	24,522,460 - 24,636,942 (-)	Ensembl			panPan2	panpan1.1

PCYT1B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	20,076,298 - 20,207,837 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	20,079,772 - 20,207,722 (-)	Ensembl			canFam3	CanFam3.1
ROS_Cfam_1.0	X	20,031,175 - 20,162,981 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	20,023,407 - 20,162,855 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	20,069,376 - 20,200,639 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	20,102,493 - 20,234,074 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	20,159,787 - 20,291,298 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Pcyt1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	13,032,509 - 13,126,131 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936624	58,792 - 125,338 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936624	31,678 - 125,318 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PCYT1B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	20,605,945 - 20,743,134 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	X	20,605,769 - 20,743,081 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	22,084,358 - 22,221,168 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PCYT1B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	23,052,554 - 23,164,196 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	23,049,091 - 23,138,210 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666056	24,913,700 - 25,029,287 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pcyt1b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624897	842,455 - 942,880 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624897	842,581 - 943,194 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Pcyt1b
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	X	51,682,597 - 51,745,562 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Pcyt1b
271 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	419
Count of miRNA genes:	216
Interacting mature miRNAs:	254
Transcripts:	ENSRNOT00000016669
Prediction methods:	Microtar, Miranda, Pita, Pita,Microtar, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
738035	Stresp1	Stress response QTL 1	4.96	0.000011	stress-related behavior trait (VT:0010451)	defensive burying - coping	X	45182909	117740458	Rat
70221	Bp56	Blood pressure QTL 56	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	X	61035856	67175160	Rat
1598837	Memor13	Memory QTL 13	3.2		exploratory behavior trait (VT:0010471)	difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	44930883	89930883	Rat

Markers in Region

AU049608

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	58,427,601 - 58,427,758 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	62,777,278 - 62,777,432	NCBI	Rnor6.0
Rnor_5.0	X	63,369,963 - 63,370,117	UniSTS	Rnor5.0
RGSC_v3.4	X	81,045,715 - 81,045,869	UniSTS	RGSC3.4
Celera	X	58,865,163 - 58,865,317	UniSTS
Cytogenetic Map	X	q22	UniSTS

Pcyt1b

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	58,404,928 - 58,404,999 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	62,754,585 - 62,754,655	NCBI	Rnor6.0
Rnor_5.0	X	63,347,270 - 63,347,340	UniSTS	Rnor5.0
RGSC_v3.4	X	81,023,015 - 81,023,085	UniSTS	RGSC3.4
Celera	X	58,842,491 - 58,842,561	UniSTS
Cytogenetic Map	X	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	11	67	162	85	84	53	84	53	6	327	183	11	141	67	92	31	16	16

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_173151	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006257016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006257017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773254	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099520	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099521	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF190256	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473966	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000016669 ⟹ ENSRNOP00000016669

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	58,404,978 - 58,468,935 (+)	Ensembl
Rnor_6.0 Ensembl	X	62,754,634 - 62,818,522 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000077055 ⟹ ENSRNOP00000068408

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	58,378,116 - 58,468,935 (+)	Ensembl
Rnor_6.0 Ensembl	X	62,727,755 - 62,817,928 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094465 ⟹ ENSRNOP00000077206

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	58,429,320 - 58,468,935 (+)	Ensembl

RefSeq Acc Id:

NM_173151 ⟹ NP_775174

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	62,398,818 - 62,462,777 (+)	NCBI
mRatBN7.2	X	58,404,978 - 58,468,940 (+)	NCBI
Rnor_6.0	X	62,754,634 - 62,818,516 (+)	NCBI
Rnor_5.0	X	63,320,419 - 63,413,884 (+)	NCBI
RGSC_v3.4	X	81,023,064 - 81,087,051 (+)	RGD
Celera	X	58,842,540 - 58,906,499 (+)	RGD

Sequence:

show sequence

TTCACTGGCCATGCCAGTAGTTACCACTGATGCTGAGTCAGAAACAGGTATCCCAAAATCCCTT
TCCAATGAGCCTCCCTCAGAAACCATGGAGGAAATAGAGCACACATGCCCACAGCCTCGACTGA
CCCTGACTGCACCAGCCCCATTTGCCGATGAGTCCAGCTGCCAGTGCCAAGCGCCTCATGAAAA
ACTGACCATTGCTCAGGCCCGCTTAGGAACTCCAGTTGACAGGCCTGTTAGAGTATATGCAGAC
GGAATATTCGACCTCTTCCACTCAGGTCATGCAAGGGCACTTATGCAAGCAAAAACCCTGTTTC
CCAACAGCTACTTGTTGGTAGGAGTTTGCAGTGATGACCTAACTCACAAATTCAAAGGTTTTAC
TGTGATGAATGAGGCAGAGAGATATGAAGCTCTCAGACACTGTCGCTACGTGGACGAAGTCATC
AGAGATGCACCATGGACTCTTACTCCAGAGTTTCTGGAAAAACACAAGATTGACTTTGTGGCTC
ACGATGACATTCCGTACTCATCTGCCGGTTCTGATGACGTTTATAAGCATATCAAGGAAGCAGG
CATGTTTGTTCCAACACAAAGAACAGAAGGCATCTCAACATCAGACATCATCACCAGAATTGTC
CGTGACTATGACGTATATGCCCGGCGTAATCTCCAGAGAGGGTACACAGCCAAGGAGCTGAATG
TCAGCTTTATAAACGAGAAGAAGTACCGTTTCCAGAACCAGGTGGACAAGATGAAAGAAAAGGT
CAAGAATGTGGAGGAAAGATCAAAGGAATTTGTTAACAGAGTAGAAGAAAAGAGTCACGACCTA
ATTCAAAAGTGGGAAGAAAAATCAAGAGAATTCATTGGCAACTTCCTAGAATTGTTTGGGCCAG
ATGGTGCATGGAAGCAGATGTTCCAGGAGAGGAGTAGCCGGATGCTACAGGCCTTATCTCCAAA
GCAGAGTCCTGTGAGCAGCCCGACCCGGAGCCGGTCCCCTTCCCGCTCTCCATCTCCTACCTTC
TCCTGGCTCCCAAACAAGACCTCTCCCCCTTCCTCACCCAAAGCAGCCTCAGCCTCCATCAGCA
GCATGAGTGAGGGGGATGAGGATGAGAAGTAAAGGTGCCTGGTTAACAAGTGCACACCACACAG
GAAGGGAAGGAGTCCCGGGATGCCTGGGTGGTGTTGAGCTGCAGCTCTGCCAGGAGATGGGAGT
TCTGCCATGGGAGTTACTAGGGCCAGCTCCTTTTCCTTCTTCATTCAATCTGGCCTGGGCTCAG
CATAGAGGTTTCTGACGTGACAACCCACACAAACCTTAGCATCATAGAAACACCCTGCTTTAGC
CCTGCTATGGAAAGGTCCAGAGCGGGGGTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGC
AAGCACAAGGCCCTGGGTTCGGTCCCCAGCTCTGGAAAAAAAAAGAGGAAAGGTCCAGAGCACT
CCATGAAGTGGGGTGACTTCTGCTTTGGTCCACACTTCTATCTGTAGCCAATGAGCCACCTGCA
GAAGTGGCTGCTGCCTCACCCTGCTATCTCCAGCCCTCAAAGAGCCTTGCACGTTACCTCCTCT
CACCCGCGCTCTCCCAGAATGAATTCCCTTCCAACTGAGGTGGCTAAGTGCTTCCAAAATGGGC
ACGTCAAAGACCAGTTCCAGCCTTCTTGGTTCAGCCTTCTAAGGCCTGATGGAATGCATCAACA
CTTTCCCATTCCAGGACCCTGACTCAGACGCTGCTTCACTTTGGTCAGATAGAAAAGTGTGACC
TTTAACCTCTCATTCAAAGGACAGTTGTGTCAAGGTGAACTCCACCTAAGGCCTGACATGCTTC
TGGCTGTACTTTCTTGTCACTGGCATGATGACACTGTTTTCAGAATTACCTGAATTGATGGAAT
CGCAACAAGGAACCTGTCTTATCTAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006257016 ⟹ XP_006257078

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	62,422,965 - 62,465,460 (+)	NCBI
mRatBN7.2	X	58,429,232 - 58,471,623 (+)	NCBI
Rnor_6.0	X	62,778,802 - 62,821,199 (+)	NCBI
Rnor_5.0	X	63,320,419 - 63,413,884 (+)	NCBI

Sequence:

show sequence

CTCTAGCCATTGGTAGCTGGGGGAGCTACCACAGGAGCAGCTATCTGCAGCCCGCCAGAATTGC
TGTGCTTTTAGGCTTTCTCCGGTGCAGATATCAGGCTTGGCCTTTGCATTGAAGAGACGTCGGC
ATCTGTGATTGGCCAGGCTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAT
TACAGGAGATGTCGTGCCACGCTTCTGAATATGAGGTTCCTTTCAGCAGAGTGTCCCGGGTGTG
GACCCTGACTGCACCAGCCCCATTTGCCGATGAGTCCAGCTGCCAGTGCCAAGCGCCTCATGAA
AAACTGACCATTGCTCAGGCCCGCTTAGGAACTCCAGTTGACAGGCCTGTTAGAGTATATGCAG
ACGGAATATTCGACCTCTTCCACTCAGGTCATGCAAGGGCACTTATGCAAGCAAAAACCCTGTT
TCCCAACAGCTACTTGTTGGTAGGAGTTTGCAGTGATGACCTAACTCACAAATTCAAAGGTTTT
ACTGTGATGAATGAGGCAGAGAGATATGAAGCTCTCAGACACTGTCGCTACGTGGACGAAGTCA
TCAGAGATGCACCATGGACTCTTACTCCAGAGTTTCTGGAAAAACACAAGATTGACTTTGTGGC
TCACGATGACATTCCGTACTCATCTGCCGGTTCTGATGACGTTTATAAGCATATCAAGGAAGCA
GGCATGTTTGTTCCAACACAAAGAACAGAAGGCATCTCAACATCAGACATCATCACCAGAATTG
TCCGTGACTATGACGTATATGCCCGGCGTAATCTCCAGAGAGGGTACACAGCCAAGGAGCTGAA
TGTCAGCTTTATAAACGAGAAGAAGTACCGTTTCCAGAACCAGGTGGACAAGATGAAAGAAAAG
GTCAAGAATGTGGAGGAAAGATCAAAGGAATTTGTTAACAGAGTAGAAGAAAAGAGTCACGACC
TAATTCAAAAGTGGGAAGAAAAATCAAGAGAATTCATTGGCAACTTCCTAGAATTGTTTGGGCC
AGATGGTGCATGGAAGCAGATGTTCCAGGAGAGGAGTAGCCGGATGCTACAGGCCTTATCTCCA
AAGCAGAGTCCTGTGAGCAGCCCGACCCGGAGCCGGTCCCCTTCCCGCTCTCCATCTCCTACCT
TCTCCTGGCTCCCAAACAAGACCTCTCCCCCTTCCTCACCCAAAGCAGCCTCAGCCTCCATCAG
CAGCATGAGTGAGGGGGATGAGGATGAGAAGTAAAGGTGCCTGGTTAACAAGTGCACACCACAC
AGGAAGGGAAGGGGTCCCGGGATGCCTGGGTGGTGTTGAGCTGCAGCTCTGCCAGGAGATGGGA
GTTCTGCCATGGGAGTTACTAGGGCCAGCTCCTTTTCCTTCTCCATTCAATCTGGCCTGGGCTC
AGCATAGAGGTTTCTGACGTGACAACCCACACAAACCTTAGCATCATAGAAACACCCTGCTTTA
GCCCTGCTATGGAAAGGTCCAGAGCGGGGGTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTA
GCAAGCACAAGGCCCTGGGTTCGGTCCCCAGCTCTGGAAAAAAAAAGAGGAAAGGTCCAGAGCA
CTCCATGAAGTGGGGTGACTTCTGCTTTGGTCCACACTTCTATCTGTAGCCAATGAGCCACCTG
CAGAAGTGGCTGCTGCCTCACCCTGCTATCTCCAGCCCTCAAAGAGCCTTGCACGTTACCTCCT
CTCACCCGCGCTCTCCCAGAATGAATTCCCTTCCAACTGAGGTGGCTAAGTGCTTCCAAAATGG
GCACGTCAAAGACCAGTTCCAGCCTTCTTGGTTCAGCCTTCTAAGGCCTGATGGAATGCATCAA
CACTTTCCCATTCCAGGACCCTGACTCAGACGCTGCTTCACTTTGGTCAGATAGAAAAGTGTGA
CCTTTAACCTCTCATTCAAAGGACAGTTGTGTCAAGGTGAACTCCACCTAAGGCCTGACATGCT
TCTGGCTGTACTTTCTTGTCACTGGCATGATGACACTGTTTTCCAGAAATTACCTGAATTGATG
GAAATCGCAACAAGGAAACCTGTCTTATCTAAAAAGAAATAACCAAACCAACCAGGAGCTGCTT
TGCTTTGGCTCCATGTATGGAAGATGAAAAATATCTCTTGGAGCTTCTTAAAGGAATGGCTCTT
TTCCATTTCTAACCACATCACAGTTCATAGACCTCAAGTAACAGTTTGATGTAACAAACACTTA
GTATACCGATAGGGGGTGCTACCTGCACGTATCTGTTCTATGTATCCTCCAATATGCCACCCCA
GGGTGTAAACCATATGCAATATGAATATATGTGGTGGTGTTGGACTATATCCCCCTCTCCTGCT
CTCCCCTTGATACCCTGCTGAAATGCTTGATCTCAAGAACCATCTGGTTCCCTCATGACTTGGG
CACTTTGTCAAAAGCTCAATCAAATGTTAGATTCCTGTAGAAATGTTTTGTCCCAGAAAATTCC
TGTTCTTCACCCATGACATTTTGGGTTAAAGAAAGGCTCAATCCTTTGAATGGTCTGAGAGACA
CTGAAGTTATTTCTGGCCCTTGTTTCTCCAAATGGGATGGAGACTTTCAGATGACTGGAGAACT
ATGTAGGGCCACTGTTCCCTAATCATATGCAGGGAATGAGCAGGTCCAGTCAAGGGTTTAGAGC
TAATCTCTTAGGTACAAATAGAATTTCCTGATTATCGTAGTAAAGACAGACAGACAGACAGCAC
AGTGGCTTGACTGAATGAAGGCCTTAACATGTAACTGGTGGGCAAAGCCCAGCACCTCCAGTGA
CAGAAACATCCTCTGTTTCCAGAGGTTTTGGGAACAAGCATTATGGAGGGTGGCAGGGGACAAC
TGATGAAGAAAGGTACCCATCTTTCCCCTTTGTGTTGGGGTCAAACTACCTCCCTTCTCGCCTG
AAGATCATTGGTGACTATTGCAAACCAAAACTGTGAGGCTAAGCCAACTTGGAGCCTCCCTGTT
CCTGGCAGAAGTCTGCAAAGTGCTCATGAAAGACGGGGTTGCTGGGAACCCAGCCTGAGAGAAA
GAAAGTTTTTTTTTTTTCGTAGTCAAGATCCTCCCGGAGCATCACTCTCCAGAGGCAAGGGCTA
CCATTCTTCTACTCTATTGGTTTGATCTCAGCCTCCCACCATACACCCAAGACAAATTGTGTAT
GTATGCCTTCCATTTAAGCCAGTTGACACTTGTGGCAGTGCAGGGACAAGGAGAGCAACTGAGC
AAATGAAGAAGAGGAGGAGAGGGTCATAGAGAGAAGAAAGCAAGCTAAAAACATCTACTGTCTT
AAGCCACTTCAGGTTGTGTGTGTGGAGACTCTCTGTTGAAGTCTTTTTAGAAAGTTCTGACTCC
ATGGTCCAGGGCAAATCAGATAGGTCCACTTTTACCTAAGTCTTGCTCTGAGGCAGAAAGTGTA
GAGCTAATGTATCAGGTGAATATAATTTTGCAGGCCCTATACACCTTCCTGACAGGTGCCACAT
ATATGACTCATCAGAGAGTGCCACCTTCGCAGCTGTGAACGATGGAAAATGACCAACATCAGAA
CCATCCCAGGTACAAACAACACTTAAGTGGTTTTAAATCTTCTCAGTTTCCAAGGGCACCTCCT
TACCTTCCCAAAGTCATGAGTTTTCCACAAGGAAATGGGGCAGACTCTGCTTTGGCCTTTCTTG
ACGAAGTTCTTCCCAGCCCTGACCCGGGTTTTACCCCCACCCCCATACCTGGGAGGAGCCATGA
CTATTCTTTGTGTGAGTTCTTCAGGCAATTCTCACAGTCAAGGGCGAGTTAGGGATCAAATGAC
AGCATAAAGTGTGCTACAAGCTTGAAGAAGTAAGAAGAAAAGGAACAAAAGCAAGGGAAAGGGT
TCTTTTCCCTCCAGGAAGGGAAAGAAGAAAGATAGAGAACCCATTCCCTAAGGTTGGTAATGGG
AAGCTGGAAAAAAAAATGACACTAGAGTTGGTGAGTACGGGAGGGCTGGTATTAGCAATTCTCA
TACTCCCCCATCCCGGGAAACCAAGTGCAGACTCTTCACATAAATAAAAGGGGTGTAGTTGTAA
TGTGGTAGTAACACTGTATGGCCCATGTCTGCCAAGAAACTTCATTGCCAGGATAACCCAGAGG
CAAAGGTAAACCAGCCCTGTGACGGACACAGTGTGGCTTCGAACATGCGGTGGGTGCGGAAGAC
TTGCCATTCTATGACCTAGGCAACAATGTTACACTGGTGGATTGTGGCTACAGGAAGAACACGG
CTTATTTCCCTTCAGTCTTCAGGACTTATTTTAATGCCCAGTCCTACTGCACAGATGAGACTGG
TTTTCAAGCAGCAGCTCCAGTCCTGTCCTAACCACCTGATGGATGGATGGAAGGAAGGAAGGAA
GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAATAAATGATAAGCAAGCCCATTAGGCACTTTT
AAAAACTTCTCCTTTTCTCTAGTTTTCTGTTGTGTCACTGCAGTGTGTCTGGGGACAAAGCCAT
AAGAACAGCCTATCTACTTAAAATTCTGCTGTACATATAAGACGAGGGCTCGTCTGGATTCAAG
AATGACCTTATGCCCAAGCATTTGCTCTGGTGCTGAATAGTGCAAACTACTGGAATCACCCCAC
CCCCACCATGGAAACTCCGAAACCCTCTTCCCCTGATCCCAAATGGACCACAGTATTCCAAACT
TGTTTATAAATAAAGGGACACAGAGTCACA

hide sequence

RefSeq Acc Id:

XM_006257017 ⟹ XP_006257079

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	62,371,934 - 62,465,460 (+)	NCBI
mRatBN7.2	X	58,378,090 - 58,471,623 (+)	NCBI
Rnor_6.0	X	62,727,691 - 62,821,199 (+)	NCBI
Rnor_5.0	X	63,320,419 - 63,413,884 (+)	NCBI

Sequence:

show sequence

AGATCAAACAATGGCCTTTTTCACAACTTCAGCTTTCACCACAACCTGCCTGTCCCCATATAAC
AGCCATCAGAGCGGACAGAGCACAGCAATTGTCAATGGACAACAGCCCAGAAGGGACAAGAGGA
CACTTGTAGCAAATCAAATAAAGCAAAGGAACTGGACAGCTTGAATCTCTGCTTAGCTCGTAAA
CCAGACACTTCTAGTCCTTTGGAGCTTATCTGTCAGCACAGGGCATATCAAGCTGCCTTGACCT
TTTGAAACCAAGTATCTCTTCCATACATCTAGAGCCACAAAAACTTCTCCCTGTGACTCAAAAG
AACTTGTAAAGGGAGAAGACCTTAGAGACGCAAGAAAGTTGGGAATGAACCTAGTGGTACACCA
GAAATGCACCATGGACAAAGACAAATTCTCACGCAAGACCCTGACTGCACCAGCCCCATTTGCC
GATGAGTCCAGCTGCCAGTGCCAAGCGCCTCATGAAAAACTGACCATTGCTCAGGCCCGCTTAG
GAACTCCAGTTGACAGGCCTGTTAGAGTATATGCAGACGGAATATTCGACCTCTTCCACTCAGG
TCATGCAAGGGCACTTATGCAAGCAAAAACCCTGTTTCCCAACAGCTACTTGTTGGTAGGAGTT
TGCAGTGATGACCTAACTCACAAATTCAAAGGTTTTACTGTGATGAATGAGGCAGAGAGATATG
AAGCTCTCAGACACTGTCGCTACGTGGACGAAGTCATCAGAGATGCACCATGGACTCTTACTCC
AGAGTTTCTGGAAAAACACAAGATTGACTTTGTGGCTCACGATGACATTCCGTACTCATCTGCC
GGTTCTGATGACGTTTATAAGCATATCAAGGAAGCAGGCATGTTTGTTCCAACACAAAGAACAG
AAGGCATCTCAACATCAGACATCATCACCAGAATTGTCCGTGACTATGACGTATATGCCCGGCG
TAATCTCCAGAGAGGGTACACAGCCAAGGAGCTGAATGTCAGCTTTATAAACGAGAAGAAGTAC
CGTTTCCAGAACCAGGTGGACAAGATGAAAGAAAAGGTCAAGAATGTGGAGGAAAGATCAAAGG
AATTTGTTAACAGAGTAGAAGAAAAGAGTCACGACCTAATTCAAAAGTGGGAAGAAAAATCAAG
AGAATTCATTGGCAACTTCCTAGAATTGTTTGGGCCAGATGGTGCATGGAAGCAGATGTTCCAG
GAGAGGAGTAGCCGGATGCTACAGGCCTTATCTCCAAAGCAGAGTCCTGTGAGCAGCCCGACCC
GGAGCCGGTCCCCTTCCCGCTCTCCATCTCCTACCTTCTCCTGGCTCCCAAACAAGACCTCTCC
CCCTTCCTCACCCAAAGCAGCCTCAGCCTCCATCAGCAGCATGAGTGAGGGGGATGAGGATGAG
AAGTAAAGGTGCCTGGTTAACAAGTGCACACCACACAGGAAGGGAAGGGGTCCCGGGATGCCTG
GGTGGTGTTGAGCTGCAGCTCTGCCAGGAGATGGGAGTTCTGCCATGGGAGTTACTAGGGCCAG
CTCCTTTTCCTTCTCCATTCAATCTGGCCTGGGCTCAGCATAGAGGTTTCTGACGTGACAACCC
ACACAAACCTTAGCATCATAGAAACACCCTGCTTTAGCCCTGCTATGGAAAGGTCCAGAGCGGG
GGTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCACAAGGCCCTGGGTTCGGTCCC
CAGCTCTGGAAAAAAAAAGAGGAAAGGTCCAGAGCACTCCATGAAGTGGGGTGACTTCTGCTTT
GGTCCACACTTCTATCTGTAGCCAATGAGCCACCTGCAGAAGTGGCTGCTGCCTCACCCTGCTA
TCTCCAGCCCTCAAAGAGCCTTGCACGTTACCTCCTCTCACCCGCGCTCTCCCAGAATGAATTC
CCTTCCAACTGAGGTGGCTAAGTGCTTCCAAAATGGGCACGTCAAAGACCAGTTCCAGCCTTCT
TGGTTCAGCCTTCTAAGGCCTGATGGAATGCATCAACACTTTCCCATTCCAGGACCCTGACTCA
GACGCTGCTTCACTTTGGTCAGATAGAAAAGTGTGACCTTTAACCTCTCATTCAAAGGACAGTT
GTGTCAAGGTGAACTCCACCTAAGGCCTGACATGCTTCTGGCTGTACTTTCTTGTCACTGGCAT
GATGACACTGTTTTCCAGAAATTACCTGAATTGATGGAAATCGCAACAAGGAAACCTGTCTTAT
CTAAAAAGAAATAACCAAACCAACCAGGAGCTGCTTTGCTTTGGCTCCATGTATGGAAGATGAA
AAATATCTCTTGGAGCTTCTTAAAGGAATGGCTCTTTTCCATTTCTAACCACATCACAGTTCAT
AGACCTCAAGTAACAGTTTGATGTAACAAACACTTAGTATACCGATAGGGGGTGCTACCTGCAC
GTATCTGTTCTATGTATCCTCCAATATGCCACCCCAGGGTGTAAACCATATGCAATATGAATAT
ATGTGGTGGTGTTGGACTATATCCCCCTCTCCTGCTCTCCCCTTGATACCCTGCTGAAATGCTT
GATCTCAAGAACCATCTGGTTCCCTCATGACTTGGGCACTTTGTCAAAAGCTCAATCAAATGTT
AGATTCCTGTAGAAATGTTTTGTCCCAGAAAATTCCTGTTCTTCACCCATGACATTTTGGGTTA
AAGAAAGGCTCAATCCTTTGAATGGTCTGAGAGACACTGAAGTTATTTCTGGCCCTTGTTTCTC
CAAATGGGATGGAGACTTTCAGATGACTGGAGAACTATGTAGGGCCACTGTTCCCTAATCATAT
GCAGGGAATGAGCAGGTCCAGTCAAGGGTTTAGAGCTAATCTCTTAGGTACAAATAGAATTTCC
TGATTATCGTAGTAAAGACAGACAGACAGACAGCACAGTGGCTTGACTGAATGAAGGCCTTAAC
ATGTAACTGGTGGGCAAAGCCCAGCACCTCCAGTGACAGAAACATCCTCTGTTTCCAGAGGTTT
TGGGAACAAGCATTATGGAGGGTGGCAGGGGACAACTGATGAAGAAAGGTACCCATCTTTCCCC
TTTGTGTTGGGGTCAAACTACCTCCCTTCTCGCCTGAAGATCATTGGTGACTATTGCAAACCAA
AACTGTGAGGCTAAGCCAACTTGGAGCCTCCCTGTTCCTGGCAGAAGTCTGCAAAGTGCTCATG
AAAGACGGGGTTGCTGGGAACCCAGCCTGAGAGAAAGAAAGTTTTTTTTTTTTCGTAGTCAAGA
TCCTCCCGGAGCATCACTCTCCAGAGGCAAGGGCTACCATTCTTCTACTCTATTGGTTTGATCT
CAGCCTCCCACCATACACCCAAGACAAATTGTGTATGTATGCCTTCCATTTAAGCCAGTTGACA
CTTGTGGCAGTGCAGGGACAAGGAGAGCAACTGAGCAAATGAAGAAGAGGAGGAGAGGGTCATA
GAGAGAAGAAAGCAAGCTAAAAACATCTACTGTCTTAAGCCACTTCAGGTTGTGTGTGTGGAGA
CTCTCTGTTGAAGTCTTTTTAGAAAGTTCTGACTCCATGGTCCAGGGCAAATCAGATAGGTCCA
CTTTTACCTAAGTCTTGCTCTGAGGCAGAAAGTGTAGAGCTAATGTATCAGGTGAATATAATTT
TGCAGGCCCTATACACCTTCCTGACAGGTGCCACATATATGACTCATCAGAGAGTGCCACCTTC
GCAGCTGTGAACGATGGAAAATGACCAACATCAGAACCATCCCAGGTACAAACAACACTTAAGT
GGTTTTAAATCTTCTCAGTTTCCAAGGGCACCTCCTTACCTTCCCAAAGTCATGAGTTTTCCAC
AAGGAAATGGGGCAGACTCTGCTTTGGCCTTTCTTGACGAAGTTCTTCCCAGCCCTGACCCGGG
TTTTACCCCCACCCCCATACCTGGGAGGAGCCATGACTATTCTTTGTGTGAGTTCTTCAGGCAA
TTCTCACAGTCAAGGGCGAGTTAGGGATCAAATGACAGCATAAAGTGTGCTACAAGCTTGAAGA
AGTAAGAAGAAAAGGAACAAAAGCAAGGGAAAGGGTTCTTTTCCCTCCAGGAAGGGAAAGAAGA
AAGATAGAGAACCCATTCCCTAAGGTTGGTAATGGGAAGCTGGAAAAAAAAATGACACTAGAGT
TGGTGAGTACGGGAGGGCTGGTATTAGCAATTCTCATACTCCCCCATCCCGGGAAACCAAGTGC
AGACTCTTCACATAAATAAAAGGGGTGTAGTTGTAATGTGGTAGTAACACTGTATGGCCCATGT
CTGCCAAGAAACTTCATTGCCAGGATAACCCAGAGGCAAAGGTAAACCAGCCCTGTGACGGACA
CAGTGTGGCTTCGAACATGCGGTGGGTGCGGAAGACTTGCCATTCTATGACCTAGGCAACAATG
TTACACTGGTGGATTGTGGCTACAGGAAGAACACGGCTTATTTCCCTTCAGTCTTCAGGACTTA
TTTTAATGCCCAGTCCTACTGCACAGATGAGACTGGTTTTCAAGCAGCAGCTCCAGTCCTGTCC
TAACCACCTGATGGATGGATGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA
GGAAATAAATGATAAGCAAGCCCATTAGGCACTTTTAAAAACTTCTCCTTTTCTCTAGTTTTCT
GTTGTGTCACTGCAGTGTGTCTGGGGACAAAGCCATAAGAACAGCCTATCTACTTAAAATTCTG
CTGTACATATAAGACGAGGGCTCGTCTGGATTCAAGAATGACCTTATGCCCAAGCATTTGCTCT
GGTGCTGAATAGTGCAAACTACTGGAATCACCCCACCCCCACCATGGAAACTCCGAAACCCTCT
TCCCCTGATCCCAAATGGACCACAGTATTCCAAACTTGTTTATAAATAAAGGGACACAGAGTCA
CA

hide sequence

RefSeq Acc Id:

XM_039099519 ⟹ XP_038955447

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	62,423,103 - 62,465,460 (+)	NCBI
mRatBN7.2	X	58,429,890 - 58,471,623 (+)	NCBI

RefSeq Acc Id:

XM_039099520 ⟹ XP_038955448

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	62,422,982 - 62,465,460 (+)	NCBI
mRatBN7.2	X	58,429,151 - 58,471,623 (+)	NCBI

RefSeq Acc Id:

XM_039099521 ⟹ XP_038955449

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	62,371,937 - 62,465,460 (+)	NCBI
mRatBN7.2	X	58,378,093 - 58,471,623 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_775174	(Get FASTA)	NCBI Sequence Viewer
	XP_006257078	(Get FASTA)	NCBI Sequence Viewer
	XP_006257079	(Get FASTA)	NCBI Sequence Viewer
	XP_038955447	(Get FASTA)	NCBI Sequence Viewer
	XP_038955448	(Get FASTA)	NCBI Sequence Viewer
	XP_038955449	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAF04586	(Get FASTA)	NCBI Sequence Viewer
	EDL96015	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000016669
	ENSRNOP00000104813
	ENSRNOP00000108294
GenBank Protein	Q9QZC4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_775174 ⟸ NM_173151

- UniProtKB:

Q9QZC4 (UniProtKB/Swiss-Prot), G3V7M5 (UniProtKB/TrEMBL), A6IPZ8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPVVTTDAESETGIPKSLSNEPPSETMEEIEHTCPQPRLTLTAPAPFADESSCQCQAPHEKLTI
AQARLGTPVDRPVRVYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMN
EAERYEALRHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSSAGSDDVYKHIKEAGMFV
PTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKKYRFQNQVDKMKEKVKNV
EERSKEFVNRVEEKSHDLIQKWEEKSREFIGNFLELFGPDGAWKQMFQERSSRMLQALSPKQSP
VSSPTRSRSPSRSPSPTFSWLPNKTSPPSSPKAASASISSMSEGDEDEK

hide sequence

RefSeq Acc Id:	XP_006257079 ⟸ XM_006257017
- Peptide Label:	isoform X2
- UniProtKB:	Q9QZC4 (UniProtKB/Swiss-Prot), A0A096MK76 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNLVVHQKCTMDKDKFSRKTLTAPAPFADESSCQCQAPHEKLTIAQARLGTPVDRPVRVYADGI FDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMNEAERYEALRHCRYVDEVIRD APWTLTPEFLEKHKIDFVAHDDIPYSSAGSDDVYKHIKEAGMFVPTQRTEGISTSDIITRIVRD YDVYARRNLQRGYTAKELNVSFINEKKYRFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQ KWEEKSREFIGNFLELFGPDGAWKQMFQERSSRMLQALSPKQSPVSSPTRSRSPSRSPSPTFSW LPNKTSPPSSPKAASASISSMSEGDEDEK hide sequence

RefSeq Acc Id:	XP_006257078 ⟸ XM_006257016
- Peptide Label:	isoform X1
- UniProtKB:	Q9QZC4 (UniProtKB/Swiss-Prot), A0A8I5ZK90 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSCHASEYEVPFSRVSRVWTLTAPAPFADESSCQCQAPHEKLTIAQARLGTPVDRPVRVYADGI FDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMNEAERYEALRHCRYVDEVIRD APWTLTPEFLEKHKIDFVAHDDIPYSSAGSDDVYKHIKEAGMFVPTQRTEGISTSDIITRIVRD YDVYARRNLQRGYTAKELNVSFINEKKYRFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQ KWEEKSREFIGNFLELFGPDGAWKQMFQERSSRMLQALSPKQSPVSSPTRSRSPSRSPSPTFSW LPNKTSPPSSPKAASASISSMSEGDEDEK hide sequence

Ensembl Acc Id:

ENSRNOP00000068408 ⟸ ENSRNOT00000077055

Ensembl Acc Id:

ENSRNOP00000016669 ⟸ ENSRNOT00000016669

RefSeq Acc Id:	XP_038955449 ⟸ XM_039099521
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038955448 ⟸ XM_039099520
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038955447 ⟸ XM_039099519
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSRNOP00000077206 ⟸ ENSRNOT00000094465

Protein Domains

Cytidyltransferase-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9QZC4-F1-model_v2	AlphaFold	Q9QZC4	1-369	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:708434	AgrOrtholog
BioCyc Gene	G2FUF-2263	BioCyc
BioCyc Pathway	PWY-3561 [choline biosynthesis III]	BioCyc
	PWY-7782 [plasmalogen biosynthesis]	BioCyc
	PWY3O-450 [phosphatidylcholine biosynthesis I]	BioCyc
BioCyc Pathway Image	PWY-3561	BioCyc
	PWY-7782	BioCyc
	PWY3O-450	BioCyc
Ensembl Genes	ENSRNOG00000012358	Ensembl
	ENSRNOG00000051341	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000016669	ENTREZGENE
	ENSRNOT00000076867	ENTREZGENE
	ENSRNOT00000169060	ENTREZGENE
Gene3D-CATH	3.40.50.620	UniProtKB/Swiss-Prot
InterPro	CCT	UniProtKB/Swiss-Prot
	Cyt_trans-like	UniProtKB/Swiss-Prot
	Pcy1-like	UniProtKB/Swiss-Prot
	Rossmann-like_a/b/a_fold	UniProtKB/Swiss-Prot
KEGG Report	rno:286936	UniProtKB/Swiss-Prot
NCBI Gene	286936	ENTREZGENE
PANTHER	CHOLINE-PHOSPHATE CYTIDYLYLTRANSFERASE B	UniProtKB/Swiss-Prot
	PTHR10739	UniProtKB/Swiss-Prot
Pfam	CTP_transf_like	UniProtKB/Swiss-Prot
PhenoGen	Pcyt1b	PhenoGen
RatGTEx	ENSRNOG00000012358	RatGTEx
	ENSRNOG00000051341	RatGTEx
Superfamily-SCOP	Nucleotidylyl transferase	UniProtKB/Swiss-Prot
UniProt	A0A096MK76	ENTREZGENE
	A0A8I5ZK90	ENTREZGENE
	A0ABK0LPB2_RAT	UniProtKB/TrEMBL
	A0ABK0M022_RAT	UniProtKB/TrEMBL
	A6IPZ8	ENTREZGENE, UniProtKB/TrEMBL
	G3V7M5	ENTREZGENE, UniProtKB/TrEMBL
	PCY1B_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-18	Pcyt1b	phosphate cytidylyltransferase 1B, choline	Pcyt1b	phosphate cytidylyltransferase 1, choline, beta	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-10-24	Pcyt1b	phosphate cytidylyltransferase 1, choline, beta	Pcyt1b	phosphate cytidylyltransferase 1, choline, beta isoform	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-02-28	Pcyt1b	phosphate cytidylyltransferase 1, choline, beta isoform	Cctbeta	CTP:phosphocholine cytidylyltransferase B	Symbol and Name updated to reflect Human and Mouse nomenclature	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

BioCyc Pathways