Vom1r97 (vomeronasal 1 receptor 97) - Rat Genome Database

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Gene: Vom1r97 (vomeronasal 1 receptor 97) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Vom1r97
Name: vomeronasal 1 receptor 97
RGD ID: 708391
Description: Predicted to enable pheromone binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway; response to pheromone; and sensory perception of chemical stimulus. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human VN1R17P (vomeronasal 1 receptor 17 pseudogene); INTERACTS WITH bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ENSRNOG00000068663; pheromone receptor VN5; putative pheromone receptor VN5; V1rb12; V1rb9; Vmn1r41; Vn5; Vnr5; vomernasal 1 receptor Vom1r97; vomeronasal 1 receptor, 97; vomeronasal 1 receptor, B9; vomeronasal receptor 5; vomeronasal type-1 receptor 41; vomeronasal type-1 receptor 97; vomeronasal type-1 receptor B12; vomeronasal type-1 receptor B9; vomeronasal V1r-type receptor V1rb12
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84123,919,092 - 123,921,263 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4123,919,092 - 123,921,263 (+)EnsemblGRCr8
mRatBN7.24122,361,863 - 122,364,034 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4122,354,847 - 122,364,309 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl4122,354,847 - 122,364,309 (+)EnsemblmRatBN7.2
Rnor_6.04121,898,248 - 121,900,419 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4121,899,292 - 121,900,224 (+)Ensemblrn6Rnor6.0
Rnor_5.04184,517,396 - 184,518,328 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44124,042,296 - 124,043,228 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4111,302,289 - 111,303,221 (+)NCBICelera
RGSC_v3.14124,286,776 - 124,287,709 (+)NCBI
Cytogenetic Map4q34NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
bisphenol A  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)
plasma membrane  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. A novel family of genes encoding putative pheromone receptors in mammals. Dulac C and Axel R, Cell 1995 Oct 20;83(2):195-206.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19952141  


Genomics

Variants

.
Variants in Vom1r97
17 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:18
Count of miRNA genes:18
Interacting mature miRNAs:18
Transcripts:ENSRNOT00000043496
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)496731383141731383Rat
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)486583980149763391Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4107346299152346299Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)492406430137406430Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4117737142152833657Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4112427331157427331Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4112427331157427331Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4123870974168870974Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4117559384162559384Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)426234499134199155Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4111383604156383604Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4108206096153206096Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4106848959168870974Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)494638356168870820Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)474169813134199155Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)486058928131411333Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4123870974168870974Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)475939858140508796Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4111383604156383604Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482944895154403548Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)445429897149763204Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)427862204126119996Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)475939858140508796Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264174095838Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)4100752691179366077Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)465060960127749483Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)484349032129349032Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)445429709157555683Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)463245026129846354Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)486709649168870974Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)457664252127749483Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)445429897149763204Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)482336765127336765Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4123870974168870974Rat
2293840Kiddil9Kidney dilation QTL 92.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)4113634167149763391Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)465495851159259805Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4116184844161184844Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)488883695133883695Rat
70201Gcr1Gastric cancer resistance QTL 12.7stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)4103834277148834277Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)486583980131583980Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)457613339151163960Rat
12798527Anxrr58Anxiety related response QTL 584.110.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4121020385148834277Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)488883695133883695Rat


Expression

RNA-SEQ Expression

endocrine system
endoderm
exocrine system
hepatobiliary system
mesenchyme
renal system
reproductive system
7 7 7 7 9 2 8

Sequence


Ensembl Acc Id: ENSRNOT00000042796   ⟹   ENSRNOP00000047657
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4122,354,847 - 122,364,309 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000077949   ⟹   ENSRNOP00000071173
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl4121,899,292 - 121,900,224 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000116872   ⟹   ENSRNOP00000097028
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4123,919,092 - 123,921,263 (+)Ensembl
mRatBN7.2 Ensembl4122,354,847 - 122,364,309 (+)Ensembl
RefSeq Acc Id: NM_173297   ⟹   NP_775419
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84123,919,092 - 123,921,263 (+)NCBI
mRatBN7.24122,361,863 - 122,364,034 (+)NCBI
Protein Sequences
Protein RefSeqs NP_775419 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC52286 (Get FASTA)   NCBI Sequence Viewer  
  EDL91337 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000047657.2
  ENSRNOP00000097028
  ENSRNOP00000097028.1
GenBank Protein Q5J3M9 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Acc Id: ENSRNOP00000071173   ⟸   ENSRNOT00000077949
Ensembl Acc Id: ENSRNOP00000047657   ⟸   ENSRNOT00000042796
Ensembl Acc Id: ENSRNOP00000097028   ⟸   ENSRNOT00000116872
RefSeq Acc Id: NP_775419   ⟸   NM_173297
- UniProtKB: Q62854 (UniProtKB/Swiss-Prot),   Q5J3M9 (UniProtKB/Swiss-Prot),   A6IB69 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5J3M9-F1-model_v2 AlphaFold Q5J3M9 1-310 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:708391 AgrOrtholog
BioCyc Gene G2FUF-43755 BioCyc
Ensembl Genes ENSRNOG00000060112 Ensembl
  ENSRNOG00000068663 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000042796.2 UniProtKB/Swiss-Prot
  ENSRNOT00000116872 ENTREZGENE
  ENSRNOT00000116872.1 UniProtKB/Swiss-Prot
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot
InterPro GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot
  Vmron_rcpt_1 UniProtKB/Swiss-Prot
KEGG Report rno:286956 UniProtKB/Swiss-Prot
NCBI Gene 286956 ENTREZGENE
PANTHER PTHR24062 UniProtKB/Swiss-Prot
Pfam V1R UniProtKB/Swiss-Prot
PhenoGen Vom1r97 PhenoGen
PRINTS VOMERONASL1R UniProtKB/Swiss-Prot
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000060112 RatGTEx
  ENSRNOG00000068663 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot
UniProt A6IB69 ENTREZGENE, UniProtKB/TrEMBL
  Q5J3M9 ENTREZGENE
  Q62854 ENTREZGENE
  V1R97_RAT UniProtKB/Swiss-Prot
UniProt Secondary Q62854 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Vom1r97  vomeronasal 1 receptor 97  Vom1r97    Data merged from RGD:150343867 737654 PROVISIONAL
2022-01-06 Vom1r97    ENSRNOG00000068663    Symbol and/or name change 19259462 PROVISIONAL
2021-08-31 ENSRNOG00000068663        Symbol and Name status set to provisional 45752 PROVISIONAL
2011-01-20 Vom1r97  vomeronasal 1 receptor 97  Vom1r97  vomeronasal 1 receptor, 97  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-06-08 Vom1r97  vomeronasal 1 receptor, 97      Symbol and Name updated 2325755 APPROVED
2010-05-25 Vom1r97  vomeronasal 1 receptor 97  V1rb9  vomeronasal 1 receptor, B9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-25 Vom1r97  vomeronasal 1 receptor, 97  Vom1r97  vomeronasal 1 receptor 97  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-07-23 V1rb9  vomeronasal 1 receptor, B9      Name updated 1299863 APPROVED
2004-09-10 V1rb9  vomeronasal 1 receptor, B9  Vnr5  vomeronasal receptor 5  Symbol and Name updated 1299863 APPROVED
2004-02-11 Vnr5  vomeronasal receptor 5  Vn5  putative pheromone receptor VN5  Symbol and Name updated 625702 APPROVED