Vom1r105 (vomeronasal 1 receptor 105) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Vom1r105 (vomeronasal 1 receptor 105) Rattus norvegicus
Analyze
Symbol: Vom1r105
Name: vomeronasal 1 receptor 105
RGD ID: 708382
Description: Predicted to enable pheromone binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway; response to pheromone; and sensory perception of chemical stimulus. Predicted to be located in membrane. Predicted to be active in plasma membrane.
Type: protein-coding
Previously known as: pheromone receptor VN1; putative pheromone receptor VN1; Vmn1r51; Vn1; Vnr1; vomernasal 1 receptor Vom1r105; vomeronasal 1 receptor, 105; vomeronasal receptor 1; vomeronasal type-1 receptor 105; vomeronasal type-1 receptor 51; vomeronasal type-1 receptor A1
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.04122,124,451 - 122,131,893 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4122,124,451 - 122,178,757 (+)Ensemblrn6Rnor6.0
Rnor_5.04186,665,286 - 186,672,513 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44124,475,324 - 124,476,449 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4111,647,576 - 111,655,063 (+)NCBICelera
RGSC_v3.14124,479,450 - 124,720,930 (+)NCBI
Cytogenetic Map4q34NCBI



Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)
plasma membrane  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. A novel family of genes encoding putative pheromone receptors in mammals. Dulac C and Axel R, Cell 1995 Oct 20;83(2):195-206.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19952141  


Genomics

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:19
Count of miRNA genes:19
Interacting mature miRNAs:19
Transcripts:ENSRNOT00000052101
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

endocrine system
endoderm
exocrine system
hepatobiliary system
mesenchyme
reproductive system
respiratory system
2 4 2 2 2 7 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_173113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000052101   ⟹   ENSRNOP00000039516
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl4122,124,451 - 122,131,893 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000088379   ⟹   ENSRNOP00000072684
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4124,325,357 - 124,327,068 (+)Ensembl
mRatBN7.2 Ensembl4122,768,139 - 122,769,850 (+)Ensembl
Rnor_6.0 Ensembl4122,130,702 - 122,178,757 (+)Ensembl
RefSeq Acc Id: NM_173113   ⟹   NP_775136
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04122,124,451 - 122,131,893 (+)NCBI
Rnor_5.04186,665,286 - 186,672,513 (+)NCBI
RGSC_v3.44124,475,324 - 124,476,449 (+)RGD
Celera4111,647,576 - 111,655,063 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_775136 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein Q62850 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_775136   ⟸   NM_173113
- Sequence:
Ensembl Acc Id: ENSRNOP00000072684   ⟸   ENSRNOT00000088379
Ensembl Acc Id: ENSRNOP00000039516   ⟸   ENSRNOT00000052101

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q62850-F1-model_v2 AlphaFold Q62850 1-311 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000049645 Ensembl
NCBI Gene 286893 ENTREZGENE
PhenoGen Vom1r105 PhenoGen
RatGTEx ENSRNOG00000049645 RatGTEx
UniProt Q62850 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-01-20 Vom1r105  vomeronasal 1 receptor 105  Vom1r105  vomeronasal 1 receptor, 105  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-06-08 Vom1r105  vomeronasal 1 receptor, 105  Vnr1  vomeronasal receptor 1  Symbol and Name updated 2325755 APPROVED
2004-02-11 Vnr1  vomeronasal receptor 1  Vn1  putative pheromone receptor VN1  Symbol and Name updated 625702 APPROVED