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Gene: Zbtb10 (zinc finger and BTB domain containing 10) Rattus norvegicus

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Symbol:

Zbtb10

Name:

zinc finger and BTB domain containing 10

RGD ID:

708377

Description:

Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Predicted to be located in chromosome, telomeric region. Predicted to be active in nucleus. Orthologous to human ZBTB10 (zinc finger and BTB domain containing 10); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

ania-11; Rinzf; zinc finger and BTB domain-containing protein 10; zinc finger protein RIN ZF

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	94,382,670 - 94,417,308 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	94,386,400 - 94,417,308 (-)	Ensembl				GRCr8
mRatBN7.2	2	92,475,254 - 92,509,892 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	92,479,014 - 92,512,515 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	98,984,227 - 99,015,192 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	97,105,240 - 97,136,209 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	92,162,106 - 92,193,075 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	94,692,939 - 94,730,976 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	94,692,939 - 94,730,978 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	114,442,396 - 114,479,721 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	2	113,381,190 - 113,381,601 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	94,538,617 - 94,569,036 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	88,065,419 - 88,095,620 (-)	NCBI		Celera
RGSC_v3.1	2	94,483,578 - 94,513,998 (-)	NCBI
Cytogenetic Map	2	q23	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (EXP,ISO)

17beta-hydroxy-17-methylestra-4,9,11-trien-3-one (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4,4'-trichlorobiphenyl (ISO)

2-hydroxypropanoic acid (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

amitrole (EXP)

ammonium chloride (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

avobenzone (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

cannabidiol (ISO)

carbon nanotube (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

clorgyline (ISO)

clotrimazole (EXP)

cobalt dichloride (EXP)

colforsin daropate hydrochloride (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

fenvalerate (EXP)

fluoranthene (ISO)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

geraniol (ISO)

GSK-J4 (ISO)

hydrogen cyanide (ISO)

leflunomide (ISO)

lipopolysaccharide (EXP,ISO)

manganese(II) chloride (EXP)

mercury atom (ISO)

mercury dibromide (ISO)

mercury(0) (ISO)

methimazole (EXP)

methylisothiazolinone (ISO)

methylmercury chloride (ISO)

N-methyl-4-phenylpyridinium (ISO)

N1'-[2-[[5-[(dimethylamino)methyl]-2-furanyl]methylthio]ethyl]-N1-methyl-2-nitroethene-1,1-diamine (EXP)

nickel atom (ISO)

nickel sulfate (ISO)

orphenadrine (EXP)

ozone (ISO)

paracetamol (ISO)

PCB138 (ISO)

perfluorohexanesulfonic acid (ISO)

phenylmercury acetate (ISO)

potassium chromate (ISO)

potassium cyanide (ISO)

quercetin (ISO)

quercetin 3-O-beta-D-galactopyranoside (ISO)

rac-lactic acid (ISO)

ranitidine (EXP)

resveratrol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

Soman (EXP)

tetrachloromethane (EXP,ISO)

titanium dioxide (ISO)

trichloroethene (ISO)

trichostatin A (ISO)

troglitazone (ISO)

tungsten (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vincristine (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA-templated transcription (IEA)

negative regulation of transcription by RNA polymerase II (IBA,IMP)

Cellular Component

chromosome, telomeric region (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IBA,IEA)

Molecular Function

DNA binding (IDA,IEA)

DNA-binding transcription repressor activity, RNA polymerase II-specific (IBA,IC,IDA)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IBA,IDA)

telomeric DNA binding (IEA,ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	RIN ZF, a novel zinc finger gene, encodes proteins that bind to the CACC element of the gastrin promoter.	Tillotson LG J Biol Chem 1999 Mar 19;274(12):8123-8.

Additional References at PubMed

PMID:9651213

Genomics

Comparative Map Data

Zbtb10
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	94,382,670 - 94,417,308 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	94,386,400 - 94,417,308 (-)	Ensembl				GRCr8
mRatBN7.2	2	92,475,254 - 92,509,892 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	92,479,014 - 92,512,515 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	98,984,227 - 99,015,192 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	97,105,240 - 97,136,209 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	92,162,106 - 92,193,075 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	94,692,939 - 94,730,976 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	94,692,939 - 94,730,978 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	114,442,396 - 114,479,721 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	2	113,381,190 - 113,381,601 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	94,538,617 - 94,569,036 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	88,065,419 - 88,095,620 (-)	NCBI		Celera
RGSC_v3.1	2	94,483,578 - 94,513,998 (-)	NCBI
Cytogenetic Map	2	q23	NCBI

ZBTB10
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	80,485,593 - 80,526,265 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	80,485,596 - 80,526,265 (+)	Ensembl			hg38	GRCh38
GRCh37	8	81,397,828 - 81,438,500 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	81,561,003 - 81,597,165 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	8	81,561,002 - 81,595,322	NCBI
Celera	8	77,403,411 - 77,439,573 (+)	NCBI		Celera
Cytogenetic Map	8	q21.13	NCBI
HuRef	8	76,887,755 - 76,928,401 (+)	NCBI		HuRef
CHM1_1	8	81,449,813 - 81,490,426 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	8	80,917,153 - 80,957,852 (+)	NCBI		T2T-CHM13v2.0

Zbtb10
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	9,315,627 - 9,350,393 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	9,315,662 - 9,350,393 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	3	9,250,567 - 9,285,333 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	9,250,602 - 9,285,333 (+)	Ensembl			mm10	GRCm38
MGSCv37	3	9,250,567 - 9,285,333 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	3	9,120,847 - 9,268,406 (+)	NCBI		MGSCv36	mm8
Celera	3	9,264,557 - 9,301,335 (+)	NCBI		Celera
Cytogenetic Map	3	A1	NCBI
cM Map	3	2.25	NCBI

Zbtb10
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955444	983,418 - 1,006,009 (-)	Ensembl
ChiLan1.0	NW_004955444	983,308 - 1,006,439 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZBTB10
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	96,226,434 - 96,284,808 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	71,852,783 - 71,912,643 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	77,011,325 - 77,051,778 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	78,635,797 - 78,676,593 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	78,636,444 - 78,669,851 (+)	Ensembl			panPan2	panpan1.1

ZBTB10
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	29	27,750,151 - 27,781,995 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	29	27,750,146 - 27,777,650 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	29	28,023,919 - 28,056,757 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	29	27,874,508 - 27,907,339 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	29	27,873,837 - 28,056,534 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	29	27,928,249 - 27,961,065 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	29	27,958,623 - 27,991,433 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	29	28,315,753 - 28,348,605 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Zbtb10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	51,323,733 - 51,361,838 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936656	3,519,033 - 3,550,862 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936656	3,516,756 - 3,552,278 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZBTB10
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	56,136,033 - 56,175,296 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	56,138,082 - 56,174,337 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	61,268,500 - 61,304,770 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZBTB10
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	75,918,402 - 75,959,221 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	75,919,657 - 75,952,485 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666039	65,234,924 - 65,276,024 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zbtb10
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624744	10,878,616 - 10,916,852 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624744	10,874,076 - 10,917,976 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Zbtb10
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	143,357,920 - 143,391,347 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Zbtb10
321 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	576
Count of miRNA genes:	274
Interacting mature miRNAs:	328
Transcripts:	ENSRNOT00000015171
Prediction methods:	Microtar, Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578777	Stresp15	Stress response QTL 15	2	0.05	blood aldosterone amount (VT:0005346)	plasma aldosterone level (CMO:0000551)	2	61556902	106556902	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
1598865	Bp296	Blood pressure QTL 296	2.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	82947902	127947902	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845370	229470703	Rat
1578772	Stresp14	Stress response QTL 14	5	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	2	84056790	132859658	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	83465462	229820014	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	20695736	231474293	Rat
1581576	Pur7	Proteinuria QTL 7		0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	2	80396178	220931218	Rat
152025242	Bw191	Body weight QTL 191	3.62		body mass (VT:0001259)		2	40306867	124537199	Rat
631198	Cm22	Cardiac mass QTL 22	4.3	0.0008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	78269809	208420281	Rat
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	27148328	145807373	Rat
61465	Bp13	Blood pressure QTL 13	3.3		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	2	78269809	104744824	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	80396178	220931218	Rat
70174	BpQTLCluster2	Blood pressure QTL cluster 2	4.24		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	2	41801363	104744824	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
2317058	Aia13	Adjuvant induced arthritis QTL 13	2.9		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	2	78269809	123269809	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	4265106	205135428	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
1300155	Bp174	Blood pressure QTL 174	4.09		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	2	44537979	112567334	Rat
5684990	Bmd82	Bone mineral density QTL 82	2.8		tibia mineral mass (VT:1000283)	bone mineral content (CMO:0001554)	2	61051541	105724065	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
61355	Bp36	Blood pressure QTL 36	2.9		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	2	7605533	104774005	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1359034	Bp274	Blood pressure QTL 274			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	51266859	96266859	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845182	205135428	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	83400752	223709938	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
2290453	Scl55	Serum cholesterol level QTL 55	2.83		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	28652666	139067443	Rat
2299162	Iddm32	Insulin dependent diabetes mellitus QTL 32	2.36		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	93602631	145807373	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	80396034	220931416	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	78269809	205135428	Rat
631500	Bp99	Blood pressure QTL 99	2.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	61051883	104684275	Rat
61392	Bp6	Blood pressure QTL 6	7		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	2	82214549	127214549	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
5684996	Bmd85	Bone mineral density QTL 85	4.7	0.024	tibia mineral mass (VT:1000283)	bone mineral density (CMO:0001226)	2	61051541	105724065	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
2293835	Kiddil5	Kidney dilation QTL 5	3.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	159440891	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	83465462	225110681	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	47856345	205135428	Rat
1558648	Smcn1	Smooth muscle cell number QTL 1		0.039	blood vessel smooth muscle cell quantity (VT:0010525)	aorta smooth muscle cell count per unit vessel length (CMO:0001646)	2	60861391	105861391	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	184731399	Rat
2306903	Bp336	Blood pressure QTL 336		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	38426449	111295694	Rat
152025206	Hrtrt23	Heart rate QTL 23	5.98		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	76328396	209350714	Rat
152025204	Hrtrt22	Heart rate QTL 22	5.6		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
61438	Cia7	Collagen induced arthritis QTL 7	4.6	0.0001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	2	61051541	143746880	Rat

Markers in Region

AU049429

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	92,488,495 - 92,488,646 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	94,702,419 - 94,702,569	NCBI	Rnor6.0
Rnor_5.0	2	114,451,876 - 114,452,026	UniSTS	Rnor5.0
RGSC_v3.4	2	94,548,097 - 94,548,247	UniSTS	RGSC3.4
Celera	2	88,074,901 - 88,075,055	UniSTS
Cytogenetic Map	2	q23	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_024489	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103200	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF050663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF091457	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473961	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000081553 ⟹ ENSRNOP00000070510

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	94,386,400 - 94,416,964 (-)	Ensembl
mRatBN7.2 Ensembl	2	92,479,014 - 92,512,515 (-)	Ensembl
Rnor_6.0 Ensembl	2	94,693,600 - 94,730,308 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000087598 ⟹ ENSRNOP00000072643

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	94,386,400 - 94,417,308 (-)	Ensembl
mRatBN7.2 Ensembl	2	92,479,014 - 92,509,859 (-)	Ensembl
Rnor_6.0 Ensembl	2	94,692,939 - 94,730,978 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000154330 ⟹ ENSRNOP00000106323

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	94,386,400 - 94,417,308 (-)	Ensembl

RefSeq Acc Id:

NM_024489 ⟹ NP_077815

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	94,386,400 - 94,417,308 (-)	NCBI
mRatBN7.2	2	92,478,984 - 92,509,892 (-)	NCBI
Rnor_6.0	2	94,692,939 - 94,730,976 (-)	NCBI
Rnor_5.0	2	113,381,190 - 113,381,601 (-)	NCBI
Rnor_5.0	2	114,442,396 - 114,479,721 (-)	NCBI
RGSC_v3.4	2	94,538,617 - 94,569,036 (-)	RGD
Celera	2	88,065,419 - 88,095,620 (-)	RGD

Sequence:

show sequence

GGCACGAGGCTCCGCCGGCTTTATTGTCGGCTCGCTATGTGGCGGAGCCTGGCGGCTTAGCGCG
CCTCTCGCGTCCGCTCCTCGGCAGCCGGCGGCGGCGGCGCGACTCCCCGAGGACGGAGATCTGT
TGGCGGGCCGGTGTGTGCGCGCAGCGCTGAAGCGGGGCAGCGGAGGGGCGCCCGCACTCCTCAA
CTTCGAAGGCCGCACGCGCCCCGGTTCCGCCGCCCGCCCACCTCTCCGCGCGGGACGCGCCCGG
AGCGCGGCGGGGCGGGGGTGGAGAGGACGCGGCTGGGACAGCGGCGGCGGCAGACGCGTGCGGC
GGCCTGGGAGCGAGCGCGAGCCGGCAGGAGGGTAAGGCCGTGCCGGCGGGAGCGCAGCGCAGAG
CGGCGCAGCGCAGCGCCGGGGGCGGGGGCGGGGGTGAGGCGTTGGGGGAGCGCGGCGAGCGCGC
GGGACGCGCCCGAGCCCGGGCGCGAGCCGAGGCACCGGGCGGCGGCGGCGACGGCGGCGCGCGC
CATGTCGTTCAGTGAAATGAACCGCAGGACGCTGGCGTTCCGAGGAGGCGGGTTGGTCACCGGC
GGCGGCCCCACGAACAATAACGCTGGCGGGGAGGCCTCTTCTTGGCCTCCGCAGTTTCAGCCGC
GACTCCCCGCGCCGCCCGTGCCGCCGCAGCCCAATGGGGCCGGGCCGACGAGGAAATGGAATCG
GAGGGCCTGGAGCCCCAAGACTCGGAGGCCTCCGCCGGGGCGGCCGCCGCGGAGGACGCCAAGG
AGTTGCTGCTCCCCTAGGACACGGGCGGCCCCGCCTTGCTGGGCGGCGGCGCGGGGGGCCCCCT
GCTAGCGGAAAGGAACCGTCGGACTCTGGCCTTCCGCGGGGGAGGCGGCGGGGGTCTCGGCAAC
AATGGCAGCAGTCGCGGCCGCCCGGAGACCTCGGCGTGGCCCCTCAGGCATTTCAATGGGCGAG
GGCTGGCGGCCGTGGATCCGGAGCTGGACGCGCTGGAGGGGAAGGAGTTGATGCAGGACGGGGC
GTCCCTGAGCTACAGCACCGAGGAGGAGGGGGCGAGCCCGGGCGATGGCAGTGGGGCGGAAGGC
GGCAGCGCAGCAGCAGCAGGCGGTCGGGAGGCGAAGGCGGGGAAGAAGCAGAGGGCAGCGGTGT
GGGAGCTGGAGAAGGAGAGACTGTCCAGCACTTCCCGCTCGCGAGGCCCAAGTCCCTCATGCAG
AAGCTCCAGTGCTCCTTCCAGACCTCTTGGCTCAAGGACTTCCCTTGGCTGCGGTACTCCAATG
ATACTGGCCTTATGTTTTGCGGCTGGTGCCAAACGACCCCCGAGGATGTGGGCAGCGTGGACCT
TCCCCAGGTGGGGCATGATGAGCTTTCGCGAGGGACCCGCAACTACAAGAAAACCCTGCTCCTG
AGGCACCACGTCTCCACCGAACACAAACTCCACGAAGCCAACGCCCAGGTGTTAGGATCACAGG
CATGTGTCACTGTCGATGGAAGTGCTGTTGATAAACCCGATGCAAGTGAGGGGTGTTTACTGGT
GGGAAATGAGTCAGAAATACCATCAGAGGAGGGATACTGTGACTTTAATAGTAGGCCAAATGAG
AACTCCTATTGCTATCAACTTCTTCGACAACTAGATGAACAGAGAAAGAAAGATATTCTTTGTG
ATGTCAGCATTGTGGTGAGCGGGAAAATCTTTAAAGCTCATAAGAACATCCTGGTTGCAGGCAG
CCGTTTCTTTAAGACTTTATATTGTGTTTCAAACAAAGAAAGCCCTAACCAAAACAATACTACC
CACTTAGATATTGCTGCAGTTCAAGGTTTTTCAGTCATCTTGGACTTCCTGTATTCTGGGAACC
TGGTGCTCACAAGCCAAAATGCCATTGAAGTGATGACAGTGGCCAGCTACCTTCAAATGAGTGA
AGTTGTTCAAACTTGCAGAAATTTTATTAAAGATGCCTTAAATATTAGCATTAAATCAGAAGCT
CCAGAGTCTGTAGTTGTGGACTATAATAATAGGAAACCAGTTAGTAGAGATGGCCTGACTTCAT
CACGGGATCAAAAAATTGCCAGCTTCTGGGCGACACGGAATCTTACCAATTTGGCAAGTAATAT
AAAAATTGAAAATGATGGTTGTAATGTCGACGAGGGCCAAATAGAAAACTACCAGATGAATGAC
AGTAACTGGGTCCAGGATGGTTCTCCTGAATTGGCTGAAAATGAATCTCAAGGTAAAACAAAAG
TGTTTATTTGGAATAATATGGCCTCTCAAGAGACTGGCAAAGCAAGGAGGAAAAACCAAACTAC
AAAGAGATTTGTCTATAATATACCACCGAATAGTGAGACAATAGTCGAAGACTGCTCCGTGTTG
CAGCCACCTGTTGCCTATCCGGAAGAAAATAAGGCCCTACTCATCAAGGAAGAGCCAGTTTCAG
ATTTGGATGGCGCACTACTCTCAGGGCCTGATGGTGATAGGACCATGAATACAAATTTATTGGC
TGAAGCCTGCAGTAGTCAAGATGCAGGAGATGCTGCTGGAGCATCACATGATTTCAAGTATGGT
TTGATGCCTGGCACTTCAAGTGATTTCAAGTATGGGTTACTACCAAGTACTTCAAATGACTTCA
AATACGGATTGCTACCGGGTGCTCCAAATGATTTCAAGTATGGATTATTGCCAGAATCTTGGCC
CACACAAGAGCCGTGGGAAAATGGTGACTCATCTCTAATCATGAACAAGTTGAAATGCCCTCAT
TGTAGCTATGTAGCCAAGTACAGGCGGACACTAAAGAGGCACTTGCTCATCCATTCTGGAGTAA
GATCCTTTAAGTGTGAAATTTGTGGAAAGATGTTTACTAGAAGAGAACACGTGAAAAGACATTC
CCTGGTGCATAAAAAGGATAAAAAATACAAATGCATGGTGTGTAAGAAGATCTTCATGTTAGCA
GCCAGTGTTGGAATAAAACATGGATCTCGACGCTACGGAGTATGCATGGACTGTGTAGATAAAT
CACAACCAGGAGGGCAGGAAAGCATAGATCAGGGACAAGATACAGAGTTCCCTCGGGATGAAGA
GTATGAGGAAAACGAAGGAGTCGAGCCTGATGAAGAGCTAGCTGAGGACGGACAGGATCAGAGC
GATGCACCGCGGTGGGATGAACCGGGAGGCGCTTACGTCTCTGGATGATTAGCTGACCTACAAT
ATTCCTCGAGAATGCTGCATTGGACATACTATGAATCGACAATTGGGATTGTTGAACTTGAAGG
CTTGCAAAATATGGTACATGCTGGATGGTAGTTACATTGCTGTGAAAAACTGTAGGGTTAAAGC
CTTATAGCAAAAAACATTTTTTTTATATTTGCACAGGACTATACAGCAAACAACCATGTGGTTG
ATACATGGAGCCCTCACCTATTTCAGTCAGTTATCAAAGTAAAATATTTTCTATTTATAGGATA
TACAGTTAACTGTTTGGGTTGTATGAAAATGTAGTACCTGTCTTTTACAGAGCTTGCTTACATT
CATGTGCCACTTTAACATGAATGAAGAAAATCCATTTATGGAAGTACAGTGACAGCTGACCCAA
TCACTCTGTCAATCAAACCACTCAGGCTAGTTTGTACTAGTAGAGTTTTGTTTCTATTTTTATT
TTATTAATTTTATTTTTTTTAATACAGATTTTCAGTGAGGGGCTTTTTCAACCCCATTGGTTCT
ATTTTCTTGTATTTTTTTTTCATTTTATTTGCTTCATAACTTAAAACCAAGTCTCTTCTAGTCT
TAGATATTATTTCTTACTTTTGTGCTGATAGGCATGTTTATAAGAACTGGAGAGGTAATTTATT
GCTCGTGCC

hide sequence

RefSeq Acc Id:

XM_039103200 ⟹ XP_038959128

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	94,382,670 - 94,416,879 (-)	NCBI
mRatBN7.2	2	92,475,254 - 92,509,464 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_077815	(Get FASTA)	NCBI Sequence Viewer
	XP_038959128	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAD22522	(Get FASTA)	NCBI Sequence Viewer
	EDM01009	(Get FASTA)	NCBI Sequence Viewer
	EDM01010	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000070510
	ENSRNOP00000072643
GenBank Protein	Q9WTY8	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_077815 ⟸ NM_024489

- UniProtKB:

A0A0G2K3H8 (UniProtKB/TrEMBL), A6IH61 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGPGRRGNGIGGPGAPRLGGLRRGGRRGGRQGVAAPLGHGRPRLAGRRRGGPPASGKEPSDSGL
PRGRRRGSRQQWQQSRPPGDLGVAPQAFQWARAGGRGSGAGRAGGEGVDAGRGVPELQHRGGGG
EPGRWQWGGRRQRSSSRRSGGEGGEEAEGSGVGAGEGETVQHFPLARPKSLMQKLQCSFQTSWL
KDFPWLRYSNDTGLMFCGWCQTTPEDVGSVDLPQVGHDELSRGTRNYKKTLLLRHHVSTEHKLH
EANAQVLGSQACVTVDGSAVDKPDASEGCLLVGNESEIPSEEGYCDFNSRPNENSYCYQLLRQL
DEQRKKDILCDVSIVVSGKIFKAHKNILVAGSRFFKTLYCVSNKESPNQNNTTHLDIAAVQGFS
VILDFLYSGNLVLTSQNAIEVMTVASYLQMSEVVQTCRNFIKDALNISIKSEAPESVVVDYNNR
KPVSRDGLTSSRDQKIASFWATRNLTNLASNIKIENDGCNVDEGQIENYQMNDSNWVQDGSPEL
AENESQGKTKVFIWNNMASQETGKARRKNQTTKRFVYNIPPNSETIVEDCSVLQPPVAYPEENK
ALLIKEEPVSDLDGALLSGPDGDRTMNTNLLAEACSSQDAGDAAGASHDFKYGLMPGTSSDFKY
GLLPSTSNDFKYGLLPGAPNDFKYGLLPESWPTQEPWENGDSSLIMNKLKCPHCSYVAKYRRTL
KRHLLIHSGVRSFKCEICGKMFTRREHVKRHSLVHKKDKKYKCMVCKKIFMLAASVGIKHGSRR
YGVCMDCVDKSQPGGQESIDQGQDTEFPRDEEYEENEGVEPDEELAEDGQDQSDAPRWDEPGGA
YVSG

hide sequence

Ensembl Acc Id:

ENSRNOP00000072643 ⟸ ENSRNOT00000087598

Ensembl Acc Id:

ENSRNOP00000070510 ⟸ ENSRNOT00000081553

RefSeq Acc Id:	XP_038959128 ⟸ XM_039103200
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JY41 (UniProtKB/TrEMBL), A6IH61 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000106323 ⟸ ENSRNOT00000154330

Protein Domains

BTB C2H2-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9WTY8-F1-model_v2	AlphaFold	Q9WTY8	1-836	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:708377	AgrOrtholog
BioCyc Gene	G2FUF-53733	BioCyc
Ensembl Genes	ENSRNOG00000061862	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000081553	ENTREZGENE
	ENSRNOT00000087598	ENTREZGENE
Gene3D-CATH	Classic Zinc Finger	UniProtKB/Swiss-Prot
	Potassium Channel Kv1.1, Chain A	UniProtKB/Swiss-Prot
InterPro	BTB/POZ_dom	UniProtKB/Swiss-Prot
	SKP1/BTB/POZ_sf	UniProtKB/Swiss-Prot
	Znf_C2H2_sf	UniProtKB/Swiss-Prot
	Znf_C2H2_type	UniProtKB/Swiss-Prot
	ZnFinger_BTB_dom_contain	UniProtKB/Swiss-Prot
KEGG Report	rno:80338	UniProtKB/Swiss-Prot
NCBI Gene	80338	ENTREZGENE
PANTHER	AGAP004733-PA	UniProtKB/Swiss-Prot
	ZINC FINGER AND BTB DOMAIN CONTAINING 10	UniProtKB/Swiss-Prot
Pfam	BTB	UniProtKB/Swiss-Prot
	zf-C2H2	UniProtKB/Swiss-Prot
PhenoGen	Zbtb10	PhenoGen
PROSITE	BTB	UniProtKB/Swiss-Prot
	ZINC_FINGER_C2H2_1	UniProtKB/Swiss-Prot
	ZINC_FINGER_C2H2_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000061862	RatGTEx
SMART	BTB	UniProtKB/Swiss-Prot
	ZnF_C2H2	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF54695	UniProtKB/Swiss-Prot
	SSF57667	UniProtKB/Swiss-Prot
UniProt	A0A0G2JY41	ENTREZGENE, UniProtKB/TrEMBL
	A0A0G2K3H8	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LL11_RAT	UniProtKB/TrEMBL
	A6IH61	ENTREZGENE, UniProtKB/TrEMBL
	A6IH62_RAT	UniProtKB/TrEMBL
	Q9WTY8	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-07-08	Zbtb10	zinc finger and BTB domain containing 10	Rinzf	zinc finger protein RIN ZF	Symbol and Name updated	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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